data_A1IPD # _chem_comp.id A1IPD _chem_comp.name "N-(1-(3,4-dichlorobenzyl)-6-oxo-1,6-dihydropyridin-3-yl)-5-oxopyrrolidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H15 Cl2 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-N-[1-[(3,4-dichlorophenyl)methyl]-6-oxidanylidene-pyridin-3-yl]-5-oxidanylidene-pyrrolidine-2-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-20 _chem_comp.pdbx_modified_date 2025-09-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 380.225 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IPD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GS6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IPD CB C1 C 0 1 N N N N N N 30.868 -6.979 38.792 5.697 0.045 -0.842 CB A1IPD 1 A1IPD CAF C2 C 0 1 N N N N N N 29.716 -7.138 39.746 6.305 0.491 0.507 CAF A1IPD 2 A1IPD CAB C3 C 0 1 N N N N N N 30.304 -6.488 40.851 5.756 1.885 0.718 CAB A1IPD 3 A1IPD OAA O1 O 0 1 N N N N N N 29.978 -6.735 42.010 6.199 2.694 1.506 OAA A1IPD 4 A1IPD N N1 N 0 1 N N N N N N 31.259 -5.593 40.532 4.707 2.097 -0.096 N A1IPD 5 A1IPD CA C4 C 0 1 N N S N N N 31.384 -5.606 39.032 4.423 0.915 -0.917 CA A1IPD 6 A1IPD C C5 C 0 1 N N N N N N 30.601 -4.640 38.364 3.243 0.163 -0.357 C A1IPD 7 A1IPD O O2 O 0 1 N N N N N N 29.391 -4.543 38.603 2.865 0.383 0.774 O A1IPD 8 A1IPD NAH N2 N 0 1 N N N N N N 31.265 -3.935 37.391 2.608 -0.755 -1.114 NAH A1IPD 9 A1IPD CAI C6 C 0 1 N N N N N N 30.746 -2.902 36.641 1.578 -1.530 -0.559 CAI A1IPD 10 A1IPD CAJ C7 C 0 1 N N N N N N 29.714 -2.001 37.018 0.342 -1.526 -1.124 CAJ A1IPD 11 A1IPD CAN C8 C 0 1 N N N N N N 31.379 -2.665 35.428 1.824 -2.319 0.580 CAN A1IPD 12 A1IPD CAO C9 C 0 1 N N N N N N 30.974 -1.623 34.621 0.813 -3.070 1.101 CAO A1IPD 13 A1IPD CAL C10 C 0 1 N N N N N N 29.961 -0.753 34.976 -0.453 -3.041 0.491 CAL A1IPD 14 A1IPD OAM O3 O 0 1 N N N N N N 29.655 0.151 34.193 -1.365 -3.710 0.950 OAM A1IPD 15 A1IPD NAK N3 N 0 1 N N N N N N 29.314 -0.913 36.161 -0.663 -2.273 -0.595 NAK A1IPD 16 A1IPD CAQ C11 C 0 1 N N N N N N 28.274 0.064 36.558 -1.987 -2.252 -1.222 CAQ A1IPD 17 A1IPD CAR C12 C 0 1 Y N N N N N 29.014 1.184 37.070 -2.821 -1.163 -0.598 CAR A1IPD 18 A1IPD CAY C13 C 0 1 Y N N N N N 29.386 1.223 38.431 -2.803 0.112 -1.131 CAY A1IPD 19 A1IPD CAV C14 C 0 1 Y N N N N N 30.122 2.288 38.909 -3.569 1.112 -0.559 CAV A1IPD 20 A1IPD CLAW CL1 CL 0 0 N N N N N N 30.555 2.361 40.634 -3.547 2.713 -1.229 CLAW A1IPD 21 A1IPD CAU C15 C 0 1 Y N N N N N 30.506 3.329 38.089 -4.353 0.835 0.548 CAU A1IPD 22 A1IPD CLAX CL2 CL 0 0 N N N N N N 31.436 4.602 38.745 -5.315 2.088 1.267 CLAX A1IPD 23 A1IPD CAT C16 C 0 1 Y N N N N N 30.173 3.324 36.747 -4.369 -0.442 1.081 CAT A1IPD 24 A1IPD CAS C17 C 0 1 Y N N N N N 29.436 2.250 36.283 -3.608 -1.441 0.505 CAS A1IPD 25 A1IPD H1 H1 H 0 1 N N N N N N 30.526 -7.086 37.752 6.372 0.269 -1.668 H1 A1IPD 26 A1IPD H2 H2 H 0 1 N N N N N N 31.648 -7.726 39.000 5.444 -1.016 -0.824 H2 A1IPD 27 A1IPD H3 H3 H 0 1 N N N N N N 28.807 -6.628 39.394 5.981 -0.171 1.310 H3 A1IPD 28 A1IPD H4 H4 H 0 1 N N N N N N 29.487 -8.194 39.954 7.393 0.515 0.446 H4 A1IPD 29 A1IPD H5 H5 H 0 1 N N N N N N 31.784 -5.029 41.169 4.204 2.925 -0.135 H5 A1IPD 30 A1IPD H6 H6 H 0 1 N N N N N N 32.442 -5.539 38.740 4.228 1.210 -1.948 H6 A1IPD 31 A1IPD H7 H7 H 0 1 N N N N N N 32.213 -4.195 37.210 2.863 -0.879 -2.041 H7 A1IPD 32 A1IPD H10 H10 H 0 1 N N N N N N 32.194 -3.301 35.115 2.803 -2.329 1.036 H10 A1IPD 33 A1IPD H13 H13 H 0 1 N N N N N N 27.668 0.362 35.690 -1.880 -2.062 -2.289 H13 A1IPD 34 A1IPD H14 H14 H 0 1 N N N N N N 27.619 -0.358 37.335 -2.475 -3.215 -1.071 H14 A1IPD 35 A1IPD H15 H15 H 0 1 N N N N N N 29.096 0.423 39.096 -2.191 0.327 -1.994 H15 A1IPD 36 A1IPD H16 H16 H 0 1 N N N N N N 30.476 4.125 36.089 -4.980 -0.659 1.945 H16 A1IPD 37 A1IPD H17 H17 H 0 1 N N N N N N 29.170 2.238 35.236 -3.621 -2.438 0.921 H17 A1IPD 38 A1IPD H8 H8 H 0 1 N N N N N N 29.218 -2.134 37.968 0.157 -0.924 -2.001 H8 A1IPD 39 A1IPD H9 H9 H 0 1 N N N N N N 31.469 -1.481 33.672 0.984 -3.685 1.972 H9 A1IPD 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IPD OAM CAL DOUB N N 1 A1IPD CAO CAL SING N N 2 A1IPD CAO CAN DOUB N N 3 A1IPD CAL NAK SING N N 4 A1IPD CAN CAI SING N N 5 A1IPD NAK CAQ SING N N 6 A1IPD NAK CAJ SING N N 7 A1IPD CAS CAT DOUB Y N 8 A1IPD CAS CAR SING Y N 9 A1IPD CAQ CAR SING N N 10 A1IPD CAI CAJ DOUB N N 11 A1IPD CAI NAH SING N N 12 A1IPD CAT CAU SING Y N 13 A1IPD CAR CAY DOUB Y N 14 A1IPD NAH C SING N N 15 A1IPD CAU CLAX SING N N 16 A1IPD CAU CAV DOUB Y N 17 A1IPD C O DOUB N N 18 A1IPD C CA SING N N 19 A1IPD CAY CAV SING Y N 20 A1IPD CB CA SING N N 21 A1IPD CB CAF SING N N 22 A1IPD CAV CLAW SING N N 23 A1IPD CA N SING N N 24 A1IPD CAF CAB SING N N 25 A1IPD N CAB SING N N 26 A1IPD CAB OAA DOUB N N 27 A1IPD CB H1 SING N N 28 A1IPD CB H2 SING N N 29 A1IPD CAF H3 SING N N 30 A1IPD CAF H4 SING N N 31 A1IPD N H5 SING N N 32 A1IPD CA H6 SING N N 33 A1IPD NAH H7 SING N N 34 A1IPD CAN H10 SING N N 35 A1IPD CAQ H13 SING N N 36 A1IPD CAQ H14 SING N N 37 A1IPD CAY H15 SING N N 38 A1IPD CAT H16 SING N N 39 A1IPD CAS H17 SING N N 40 A1IPD CAJ H8 SING N N 41 A1IPD CAO H9 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IPD InChI InChI 1.06 "InChI=1S/C17H15Cl2N3O3/c18-12-3-1-10(7-13(12)19)8-22-9-11(2-6-16(22)24)20-17(25)14-4-5-15(23)21-14/h1-3,6-7,9,14H,4-5,8H2,(H,20,25)(H,21,23)/t14-/m0/s1" A1IPD InChIKey InChI 1.06 JMWNXVYWXDVAAF-AWEZNQCLSA-N A1IPD SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(CN2C=C(NC(=O)[C@@H]3CCC(=O)N3)C=CC2=O)cc1Cl" A1IPD SMILES CACTVS 3.385 "Clc1ccc(CN2C=C(NC(=O)[CH]3CCC(=O)N3)C=CC2=O)cc1Cl" A1IPD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CN2C=C(C=CC2=O)NC(=O)[C@@H]3CCC(=O)N3)Cl)Cl" A1IPD SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CN2C=C(C=CC2=O)NC(=O)C3CCC(=O)N3)Cl)Cl" # _pdbx_chem_comp_identifier.comp_id A1IPD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-~{N}-[1-[(3,4-dichlorophenyl)methyl]-6-oxidanylidene-pyridin-3-yl]-5-oxidanylidene-pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IPD "Create component" 2024-09-20 PDBE A1IPD "Modify aromatic_flag" 2024-09-24 PDBE A1IPD "Modify synonyms" 2024-09-24 PDBE A1IPD "Initial release" 2025-09-24 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IPD _pdbx_chem_comp_synonyms.name "(2S)-N-[1-[(3,4-dichlorophenyl)methyl]-6-oxidanylidene-pyridin-3-yl]-5-oxidanylidene-pyrrolidine-2-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #