data_A1IPF # _chem_comp.id A1IPF _chem_comp.name "(3~{a}~{S},8~{a}~{R})-2-[8,8-bis(chloranyl)-7-propan-2-yl-7$l^{3}-oxa-8$l^{5}-ruthenabicyclo[4.3.0]nona-1(6),2,4-trien-8-yl]-1,3-bis(2,4,6-trimethylphenyl)-3~{a},7,8,8~{a}-tetrahydroimidazo[4,5-d][1,2,7]thiadiazepine 6,6-dioxide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H44 Cl2 N4 O3 Ru S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2024-09-23 _chem_comp.pdbx_modified_date 2025-05-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 748.768 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IPF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8S6P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IPF C10 C1 C 0 1 N N N N N N 12.183 9.894 28.248 -3.265 1.490 -0.714 C10 A1IPF 1 A1IPF C13 C2 C 0 1 Y N N N N N 9.194 10.933 31.405 -0.590 4.657 0.335 C13 A1IPF 2 A1IPF C15 C3 C 0 1 N N N N N N 8.190 12.969 30.093 0.969 3.063 1.471 C15 A1IPF 3 A1IPF C17 C4 C 0 1 N N N N N N 9.233 12.163 27.061 -0.094 0.319 -0.333 C17 A1IPF 4 A1IPF C21 C5 C 0 1 N N N N N N 7.002 10.348 25.392 2.086 -1.508 -0.600 C21 A1IPF 5 A1IPF C22 C6 C 0 1 Y N N N N N 6.274 9.403 25.244 3.199 -2.104 0.234 C22 A1IPF 6 A1IPF C26 C7 C 0 1 N N N N N N 6.985 6.632 28.483 4.413 0.195 -1.844 C26 A1IPF 7 A1IPF C28 C8 C 0 1 Y N N N N N 4.977 7.482 26.120 5.089 -1.470 1.550 C28 A1IPF 8 A1IPF O01 O1 O 0 1 N N N N N N 14.191 16.596 27.079 -4.587 -1.777 3.638 O01 A1IPF 9 A1IPF S02 S1 S 0 1 N N N N N N 13.736 15.119 27.215 -4.580 -1.659 2.222 S02 A1IPF 10 A1IPF N03 N1 N 0 1 N N N N N N 12.922 14.735 25.704 -3.305 -2.578 1.691 N03 A1IPF 11 A1IPF C04 C9 C 0 1 N N N N N N 11.567 14.073 25.519 -2.661 -2.244 0.411 C04 A1IPF 12 A1IPF C05 C10 C 0 1 N N R N N N 10.739 13.934 26.753 -1.617 -1.191 0.634 C05 A1IPF 13 A1IPF C06 C11 C 0 1 N N R N N N 11.278 13.131 27.691 -2.094 0.207 0.854 C06 A1IPF 14 A1IPF N07 N2 N 0 1 N N N N N N 10.190 12.206 27.995 -0.863 1.015 0.735 N07 A1IPF 15 A1IPF C08 C12 C 0 1 Y N N N N N 10.204 11.370 29.233 -1.160 2.328 0.364 C08 A1IPF 16 A1IPF C09 C13 C 0 1 Y N N N N N 11.084 10.303 29.388 -2.322 2.606 -0.344 C09 A1IPF 17 A1IPF C11 C14 C 0 1 Y N N N N N 11.018 9.542 30.572 -2.612 3.906 -0.709 C11 A1IPF 18 A1IPF C12 C15 C 0 1 Y N N N N N 10.077 9.857 31.584 -1.748 4.931 -0.370 C12 A1IPF 19 A1IPF C14 C16 C 0 1 Y N N N N N 9.248 11.684 30.246 -0.293 3.360 0.703 C14 A1IPF 20 A1IPF C16 C17 C 0 1 N N N N N N 9.969 9.022 32.959 -2.069 6.348 -0.768 C16 A1IPF 21 A1IPF RU18 RU1 RU 0 0 N N N N N N 7.843 10.740 27.125 1.842 0.336 0.111 RU18 A1IPF 22 A1IPF CL19 CL1 CL 0 0 N N N N N N 6.327 12.337 27.917 1.407 0.639 2.244 CL19 A1IPF 23 A1IPF CL20 CL2 CL 0 0 N N N N N N 9.359 8.943 27.110 2.184 2.068 -1.199 CL20 A1IPF 24 A1IPF C23 C18 C 0 1 Y N N N N N 5.866 8.613 26.332 3.993 -1.101 0.751 C23 A1IPF 25 A1IPF O24 O2 O 1 1 N N N N N N 6.364 9.018 27.473 3.635 0.165 0.444 O24 A1IPF 26 A1IPF C25 C19 C 0 1 N N N N N N 6.397 8.114 28.798 4.471 0.873 -0.474 C25 A1IPF 27 A1IPF C27 C20 C 0 1 N N N N N N 4.918 8.059 29.472 5.912 0.865 0.039 C27 A1IPF 28 A1IPF C29 C21 C 0 1 Y N N N N N 4.512 7.157 24.845 5.359 -2.793 1.811 C29 A1IPF 29 A1IPF C30 C22 C 0 1 Y N N N N N 4.909 7.941 23.742 4.550 -3.785 1.288 C30 A1IPF 30 A1IPF C31 C23 C 0 1 Y N N N N N 5.786 9.059 23.942 3.472 -3.437 0.500 C31 A1IPF 31 A1IPF N32 N3 N 0 1 N N N N N N 9.407 13.342 26.469 -0.582 -1.082 -0.405 N32 A1IPF 32 A1IPF C33 C24 C 0 1 Y N N N N N 8.915 13.693 25.222 -1.108 -1.365 -1.667 C33 A1IPF 33 A1IPF C34 C25 C 0 1 Y N N N N N 8.328 14.947 25.071 -1.572 -0.336 -2.475 C34 A1IPF 34 A1IPF C35 C26 C 0 1 N N N N N N 8.126 16.001 26.294 -1.510 1.090 -1.991 C35 A1IPF 35 A1IPF C36 C27 C 0 1 Y N N N N N 7.881 15.308 23.828 -2.091 -0.619 -3.723 C36 A1IPF 36 A1IPF C37 C28 C 0 1 Y N N N N N 8.010 14.464 22.755 -2.148 -1.927 -4.169 C37 A1IPF 37 A1IPF C38 C29 C 0 1 Y N N N N N 8.609 13.215 22.917 -1.687 -2.955 -3.367 C38 A1IPF 38 A1IPF C39 C30 C 0 1 Y N N N N N 9.075 12.825 24.141 -1.162 -2.678 -2.120 C39 A1IPF 39 A1IPF C40 C31 C 0 1 N N N N N N 9.788 11.349 24.225 -0.654 -3.798 -1.249 C40 A1IPF 40 A1IPF C41 C32 C 0 1 N N N N N N 7.470 14.902 21.318 -2.714 -2.233 -5.531 C41 A1IPF 41 A1IPF C42 C33 C 0 1 N N N N N N 11.701 13.793 28.888 -2.911 0.462 2.086 C42 A1IPF 42 A1IPF N43 N4 N 0 1 N N N N N N 12.591 15.017 28.579 -4.271 -0.063 1.893 N43 A1IPF 43 A1IPF O44 O3 O 0 1 N N N N N N 14.826 14.042 27.451 -5.690 -2.020 1.412 O44 A1IPF 44 A1IPF H1 H1 H 0 1 N N N N N N 13.123 10.434 28.434 -3.776 1.135 0.181 H1 A1IPF 45 A1IPF H2 H2 H 0 1 N N N N N N 12.368 8.811 28.290 -4.000 1.858 -1.430 H2 A1IPF 46 A1IPF H3 H3 H 0 1 N N N N N N 11.797 10.162 27.254 -2.701 0.671 -1.160 H3 A1IPF 47 A1IPF H4 H4 H 0 1 N N N N N N 8.473 11.174 32.172 0.086 5.459 0.595 H4 A1IPF 48 A1IPF H5 H5 H 0 1 N N N N N N 8.653 13.877 30.508 0.807 3.270 2.529 H5 A1IPF 49 A1IPF H6 H6 H 0 1 N N N N N N 7.958 13.128 29.030 1.235 2.014 1.342 H6 A1IPF 50 A1IPF H7 H7 H 0 1 N N N N N N 7.262 12.747 30.641 1.778 3.691 1.098 H7 A1IPF 51 A1IPF H11 H11 H 0 1 N N N N N N 6.995 6.037 29.408 3.386 0.200 -2.209 H11 A1IPF 52 A1IPF H12 H12 H 0 1 N N N N N N 6.348 6.136 27.735 5.050 0.734 -2.544 H12 A1IPF 53 A1IPF H13 H13 H 0 1 N N N N N N 8.009 6.720 28.092 4.761 -0.835 -1.755 H13 A1IPF 54 A1IPF H14 H14 H 0 1 N N N N N N 4.671 6.883 26.965 5.728 -0.702 1.965 H14 A1IPF 55 A1IPF H15 H15 H 0 1 N N N N N N 10.995 14.671 24.794 -2.194 -3.137 -0.005 H15 A1IPF 56 A1IPF H16 H16 H 0 1 N N N N N N 10.581 14.940 27.168 -1.084 -1.473 1.542 H16 A1IPF 57 A1IPF H17 H17 H 0 1 N N N N N N 12.122 12.563 27.273 -2.723 0.465 0.002 H17 A1IPF 58 A1IPF H18 H18 H 0 1 N N N N N N 11.692 8.709 30.710 -3.516 4.123 -1.259 H18 A1IPF 59 A1IPF H19 H19 H 0 1 N N N N N N 9.256 8.194 32.831 -1.640 6.555 -1.749 H19 A1IPF 60 A1IPF H20 H20 H 0 1 N N N N N N 10.958 8.617 33.221 -3.150 6.478 -0.810 H20 A1IPF 61 A1IPF H21 H21 H 0 1 N N N N N N 9.619 9.685 33.764 -1.648 7.036 -0.035 H21 A1IPF 62 A1IPF H22 H22 H 0 1 N N N N N N 7.074 8.595 29.519 4.122 1.902 -0.563 H22 A1IPF 63 A1IPF H23 H23 H 0 1 N N N N N N 4.564 9.082 29.666 6.291 -0.157 0.043 H23 A1IPF 64 A1IPF H24 H24 H 0 1 N N N N N N 4.221 7.554 28.787 6.533 1.480 -0.613 H24 A1IPF 65 A1IPF H25 H25 H 0 1 N N N N N N 4.968 7.503 30.420 5.940 1.266 1.052 H25 A1IPF 66 A1IPF H26 H26 H 0 1 N N N N N N 3.854 6.312 24.704 6.206 -3.059 2.427 H26 A1IPF 67 A1IPF H27 H27 H 0 1 N N N N N N 4.554 7.701 22.751 4.761 -4.823 1.493 H27 A1IPF 68 A1IPF H28 H28 H 0 1 N N N N N N 6.085 9.654 23.092 2.836 -4.208 0.088 H28 A1IPF 69 A1IPF H29 H29 H 0 1 N N N N N N 9.007 16.655 26.364 -0.885 1.676 -2.665 H29 A1IPF 70 A1IPF H30 H30 H 0 1 N N N N N N 7.230 16.611 26.108 -2.515 1.511 -1.969 H30 A1IPF 71 A1IPF H31 H31 H 0 1 N N N N N N 8.004 15.449 27.237 -1.083 1.115 -0.988 H31 A1IPF 72 A1IPF H32 H32 H 0 1 N N N N N N 7.419 16.274 23.690 -2.452 0.181 -4.352 H32 A1IPF 73 A1IPF H33 H33 H 0 1 N N N N N N 8.705 12.552 22.070 -1.734 -3.975 -3.717 H33 A1IPF 74 A1IPF H34 H34 H 0 1 N N N N N N 9.029 10.587 24.455 -1.498 -4.366 -0.859 H34 A1IPF 75 A1IPF H35 H35 H 0 1 N N N N N N 10.261 11.115 23.260 -0.015 -4.455 -1.838 H35 A1IPF 76 A1IPF H36 H36 H 0 1 N N N N N N 10.552 11.356 25.016 -0.082 -3.382 -0.420 H36 A1IPF 77 A1IPF H37 H37 H 0 1 N N N N N N 8.269 15.420 20.768 -1.915 -2.208 -6.272 H37 A1IPF 78 A1IPF H38 H38 H 0 1 N N N N N N 7.157 14.009 20.756 -3.169 -3.224 -5.522 H38 A1IPF 79 A1IPF H39 H39 H 0 1 N N N N N N 6.611 15.579 21.440 -3.469 -1.489 -5.786 H39 A1IPF 80 A1IPF H40 H40 H 0 1 N N N N N N 10.813 14.129 29.443 -2.448 -0.035 2.938 H40 A1IPF 81 A1IPF H41 H41 H 0 1 N N N N N N 12.272 13.084 29.505 -2.960 1.535 2.274 H41 A1IPF 82 A1IPF H42 H42 H 0 1 N N N N N N 13.140 15.164 29.402 -4.981 0.518 1.578 H42 A1IPF 83 A1IPF H8 H8 H 0 1 N N N N N N 7.823 10.222 24.671 2.378 -1.471 -1.646 H8 A1IPF 84 A1IPF H9 H9 H 0 1 N N N N N N 6.413 11.238 25.125 1.173 -2.082 -0.473 H9 A1IPF 85 A1IPF H10 H10 H 0 1 N N N N N N 12.844 15.611 25.228 -2.987 -3.327 2.218 H10 A1IPF 86 A1IPF H43 H43 H 0 1 N N N N N N 11.736 13.066 25.111 -3.411 -1.869 -0.286 H43 A1IPF 87 A1IPF H44 H44 H 0 1 N N N N N N 9.847 11.611 26.335 -0.258 0.817 -1.289 H44 A1IPF 88 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IPF C10 C09 SING N N 1 A1IPF C13 C12 DOUB Y N 2 A1IPF C13 C14 SING Y N 3 A1IPF C15 C14 SING N N 4 A1IPF C17 N07 SING N N 5 A1IPF C17 RU18 SING N N 6 A1IPF C17 N32 SING N N 7 A1IPF C21 C22 SING N N 8 A1IPF C21 RU18 SING N N 9 A1IPF C22 C23 DOUB Y N 10 A1IPF C22 C31 SING Y N 11 A1IPF C26 C25 SING N N 12 A1IPF C28 C23 SING Y N 13 A1IPF C28 C29 DOUB Y N 14 A1IPF O01 S02 DOUB N N 15 A1IPF S02 N03 SING N N 16 A1IPF S02 N43 SING N N 17 A1IPF S02 O44 DOUB N N 18 A1IPF N03 C04 SING N N 19 A1IPF C04 C05 SING N N 20 A1IPF C05 C06 SING N N 21 A1IPF C05 N32 SING N N 22 A1IPF C06 N07 SING N N 23 A1IPF C06 C42 SING N N 24 A1IPF N07 C08 SING N N 25 A1IPF C08 C09 SING Y N 26 A1IPF C08 C14 DOUB Y N 27 A1IPF C09 C11 DOUB Y N 28 A1IPF C11 C12 SING Y N 29 A1IPF C12 C16 SING N N 30 A1IPF RU18 CL19 SING N N 31 A1IPF RU18 CL20 SING N N 32 A1IPF RU18 O24 SING N N 33 A1IPF C23 O24 SING N N 34 A1IPF O24 C25 SING N N 35 A1IPF C25 C27 SING N N 36 A1IPF C29 C30 SING Y N 37 A1IPF C30 C31 DOUB Y N 38 A1IPF N32 C33 SING N N 39 A1IPF C33 C34 DOUB Y N 40 A1IPF C33 C39 SING Y N 41 A1IPF C34 C35 SING N N 42 A1IPF C34 C36 SING Y N 43 A1IPF C36 C37 DOUB Y N 44 A1IPF C37 C38 SING Y N 45 A1IPF C37 C41 SING N N 46 A1IPF C38 C39 DOUB Y N 47 A1IPF C39 C40 SING N N 48 A1IPF C42 N43 SING N N 49 A1IPF C10 H1 SING N N 50 A1IPF C10 H2 SING N N 51 A1IPF C10 H3 SING N N 52 A1IPF C13 H4 SING N N 53 A1IPF C15 H5 SING N N 54 A1IPF C15 H6 SING N N 55 A1IPF C15 H7 SING N N 56 A1IPF C26 H11 SING N N 57 A1IPF C26 H12 SING N N 58 A1IPF C26 H13 SING N N 59 A1IPF C28 H14 SING N N 60 A1IPF C04 H15 SING N N 61 A1IPF C05 H16 SING N N 62 A1IPF C06 H17 SING N N 63 A1IPF C11 H18 SING N N 64 A1IPF C16 H19 SING N N 65 A1IPF C16 H20 SING N N 66 A1IPF C16 H21 SING N N 67 A1IPF C25 H22 SING N N 68 A1IPF C27 H23 SING N N 69 A1IPF C27 H24 SING N N 70 A1IPF C27 H25 SING N N 71 A1IPF C29 H26 SING N N 72 A1IPF C30 H27 SING N N 73 A1IPF C31 H28 SING N N 74 A1IPF C35 H29 SING N N 75 A1IPF C35 H30 SING N N 76 A1IPF C35 H31 SING N N 77 A1IPF C36 H32 SING N N 78 A1IPF C38 H33 SING N N 79 A1IPF C40 H34 SING N N 80 A1IPF C40 H35 SING N N 81 A1IPF C40 H36 SING N N 82 A1IPF C41 H37 SING N N 83 A1IPF C41 H38 SING N N 84 A1IPF C41 H39 SING N N 85 A1IPF C42 H40 SING N N 86 A1IPF C42 H41 SING N N 87 A1IPF N43 H42 SING N N 88 A1IPF C21 H8 SING N N 89 A1IPF C21 H9 SING N N 90 A1IPF N03 H10 SING N N 91 A1IPF C04 H43 SING N N 92 A1IPF C17 H44 SING N N 93 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IPF InChI InChI 1.06 "InChI=1S/C23H31N4O2S.C10H13O.2ClH.Ru/c1-14-7-16(3)22(17(4)8-14)26-13-27(23-18(5)9-15(2)10-19(23)6)21-12-25-30(28,29)24-11-20(21)26;1-8(2)11-10-7-5-4-6-9(10)3;;;/h7-10,13,20-21,24-25H,11-12H2,1-6H3;4-8H,3H2,1-2H3;2*1H;/q;;;;+3/p-2/t20-,21-;;;;/m1..../s1" A1IPF InChIKey InChI 1.06 IJZBEQMJAGTRMB-ZPVXIRCVSA-L A1IPF SMILES_CANONICAL CACTVS 3.385 "CC(C)[O+]1c2ccccc2C[Ru]1(Cl)(Cl)C3N([C@@H]4CN[S](=O)(=O)NC[C@H]4N3c5c(C)cc(C)cc5C)c6c(C)cc(C)cc6C" A1IPF SMILES CACTVS 3.385 "CC(C)[O+]1c2ccccc2C[Ru]1(Cl)(Cl)C3N([CH]4CN[S](=O)(=O)NC[CH]4N3c5c(C)cc(C)cc5C)c6c(C)cc(C)cc6C" A1IPF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(c(c1)C)N2[C@@H]3CNS(=O)(=O)NC[C@H]3N(C2[Ru]4(Cc5ccccc5[O+]4C(C)C)(Cl)Cl)c6c(cc(cc6C)C)C)C" A1IPF SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(c(c1)C)N2C3CNS(=O)(=O)NCC3N(C2[Ru]4(Cc5ccccc5[O+]4C(C)C)(Cl)Cl)c6c(cc(cc6C)C)C)C" # _pdbx_chem_comp_identifier.comp_id A1IPF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{a}~{R},8~{a}~{R})-2-[8,8-bis(chloranyl)-7-propan-2-yl-7-oxonia-8$l^{5}-ruthenabicyclo[4.3.0]nona-1(6),2,4-trien-8-yl]-1,3-bis(2,4,6-trimethylphenyl)-3~{a},4,5,7,8,8~{a}-hexahydro-2~{H}-imidazo[4,5-d][1,2,7]thiadiazepine 6,6-dioxide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IPF "Create component" 2024-09-23 PDBE A1IPF "Modify coordinates" 2025-01-03 PDBE A1IPF "Initial release" 2025-05-28 RCSB #