data_A1IPK # _chem_comp.id A1IPK _chem_comp.name "(2S)-2-[2-(3-methoxyphenoxy)ethanoylamino]-4-methyl-N-[(2S)-3-oxidanylidene-1-phenyl-pentan-2-yl]pentanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H34 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-24 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 454.559 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IPK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GV2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IPK C8 C1 C 0 1 N N N N N N 24.940 -15.755 -15.370 1.688 -0.604 -0.364 C8 A1IPK 1 A1IPK C10 C2 C 0 1 N N S N N N 24.054 -13.667 -16.250 -0.724 -0.889 -0.562 C10 A1IPK 2 A1IPK C13 C3 C 0 1 N N N N N N 25.319 -14.365 -18.903 -2.473 -3.342 -2.954 C13 A1IPK 3 A1IPK C15 C4 C 0 1 N N N N N N 23.358 -12.724 -15.264 -1.875 -0.690 0.390 C15 A1IPK 4 A1IPK C17 C5 C 0 1 N N S N N N 23.343 -10.475 -14.303 -4.166 -0.003 0.855 C17 A1IPK 5 A1IPK C20 C6 C 0 1 Y N N N N N 24.741 -12.443 -12.264 -3.809 2.508 -1.246 C20 A1IPK 6 A1IPK C21 C7 C 0 1 Y N N N N N 24.626 -13.500 -11.380 -3.182 3.718 -1.475 C21 A1IPK 7 A1IPK C22 C8 C 0 1 Y N N N N N 23.857 -13.370 -10.242 -3.213 4.707 -0.509 C22 A1IPK 8 A1IPK C24 C9 C 0 1 Y N N N N N 23.316 -11.121 -10.879 -4.499 3.274 0.915 C24 A1IPK 9 A1IPK C26 C10 C 0 1 N N N N N N 22.248 -9.508 -16.462 -5.810 -1.312 2.403 C26 A1IPK 10 A1IPK C11 C11 C 0 1 N N N N N N 23.424 -13.382 -17.618 -0.941 -2.174 -1.364 C11 A1IPK 11 A1IPK C12 C12 C 0 1 N N N N N N 23.807 -14.323 -18.749 -2.161 -2.009 -2.271 C12 A1IPK 12 A1IPK C14 C13 C 0 1 N N N N N N 23.140 -13.890 -20.051 -1.867 -0.948 -3.334 C14 A1IPK 13 A1IPK C18 C14 C 0 1 N N N N N N 24.142 -10.127 -13.041 -5.151 0.966 0.198 C18 A1IPK 14 A1IPK C19 C15 C 0 1 Y N N N N N 24.088 -11.243 -12.028 -4.467 2.286 -0.051 C19 A1IPK 15 A1IPK C23 C16 C 0 1 Y N N N N N 23.203 -12.181 -9.995 -3.871 4.484 0.686 C23 A1IPK 16 A1IPK C25 C17 C 0 1 N N N N N N 23.109 -9.288 -15.238 -4.881 -1.279 1.216 C25 A1IPK 17 A1IPK C27 C18 C 0 1 N N N N N N 21.434 -8.289 -16.819 -6.402 -2.716 2.547 C27 A1IPK 18 A1IPK C31 C19 C 0 1 N N N N N N 24.688 -17.218 -15.102 2.954 -0.603 0.453 C31 A1IPK 19 A1IPK C33 C20 C 0 1 Y N N N N N 25.265 -17.650 -12.809 5.265 -0.088 0.234 C33 A1IPK 20 A1IPK C34 C21 C 0 1 Y N N N N N 26.163 -18.283 -11.965 5.416 -0.463 1.562 C34 A1IPK 21 A1IPK C35 C22 C 0 1 Y N N N N N 25.928 -18.283 -10.600 6.660 -0.406 2.160 C35 A1IPK 22 A1IPK C36 C23 C 0 1 Y N N N N N 24.805 -17.664 -10.074 7.757 0.023 1.438 C36 A1IPK 23 A1IPK C37 C24 C 0 1 Y N N N N N 23.913 -17.040 -10.929 7.612 0.399 0.110 C37 A1IPK 24 A1IPK C39 C25 C 0 1 N N N N N N 22.406 -16.781 -9.066 9.946 0.853 0.085 C39 A1IPK 25 A1IPK C40 C26 C 0 1 Y N N N N N 24.134 -17.025 -12.300 6.364 0.343 -0.492 C40 A1IPK 26 A1IPK N16 N1 N 0 1 N N N N N N 23.998 -11.598 -14.949 -3.077 -0.301 -0.079 N16 A1IPK 27 A1IPK N9 N2 N 0 1 N N N N N N 23.922 -15.066 -15.899 0.525 -0.991 0.197 N9 A1IPK 28 A1IPK O29 O1 O 0 1 N N N N N N 23.608 -8.207 -15.013 -4.711 -2.275 0.555 O29 A1IPK 29 A1IPK O30 O2 O 0 1 N N N N N N 22.332 -13.070 -14.693 -1.720 -0.881 1.577 O30 A1IPK 30 A1IPK O32 O3 O 0 1 N N N N N N 25.599 -17.730 -14.139 4.042 -0.149 -0.355 O32 A1IPK 31 A1IPK O38 O4 O 0 1 N N N N N N 22.766 -16.487 -10.424 8.691 0.821 -0.599 O38 A1IPK 32 A1IPK O7 O5 O 0 1 N N N N N N 26.019 -15.247 -15.065 1.714 -0.251 -1.524 O7 A1IPK 33 A1IPK H10 H1 H 0 1 N N N N N N 25.120 -13.398 -16.295 -0.666 -0.040 -1.244 H10 A1IPK 34 A1IPK H13C H2 H 0 0 N N N N N N 25.776 -14.679 -17.953 -2.682 -4.098 -2.197 H13C A1IPK 35 A1IPK H13A H3 H 0 0 N N N N N N 25.587 -15.081 -19.694 -3.343 -3.224 -3.601 H13A A1IPK 36 A1IPK H13B H4 H 0 0 N N N N N N 25.688 -13.365 -19.174 -1.616 -3.654 -3.551 H13B A1IPK 37 A1IPK H17 H5 H 0 1 N N N N N N 22.352 -10.814 -13.967 -3.756 0.452 1.757 H17 A1IPK 38 A1IPK H20 H6 H 0 1 N N N N N N 25.348 -12.554 -13.150 -3.789 1.738 -2.003 H20 A1IPK 39 A1IPK H21 H7 H 0 1 N N N N N N 25.139 -14.429 -11.581 -2.667 3.892 -2.408 H21 A1IPK 40 A1IPK H22 H8 H 0 1 N N N N N N 23.768 -14.194 -9.549 -2.722 5.652 -0.687 H22 A1IPK 41 A1IPK H24 H9 H 0 1 N N N N N N 22.801 -10.194 -10.674 -5.014 3.100 1.848 H24 A1IPK 42 A1IPK H26A H10 H 0 0 N N N N N N 21.562 -10.346 -16.266 -5.256 -1.057 3.306 H26A A1IPK 43 A1IPK H26B H11 H 0 0 N N N N N N 22.900 -9.759 -17.312 -6.615 -0.592 2.254 H26B A1IPK 44 A1IPK H11A H12 H 0 0 N N N N N N 23.717 -12.364 -17.916 -0.059 -2.375 -1.973 H11A A1IPK 45 A1IPK H11B H13 H 0 0 N N N N N N 22.331 -13.429 -17.499 -1.106 -3.005 -0.679 H11B A1IPK 46 A1IPK H12 H14 H 0 1 N N N N N N 23.454 -15.334 -18.497 -3.018 -1.697 -1.674 H12 A1IPK 47 A1IPK H14B H15 H 0 0 N N N N N N 22.049 -13.867 -19.915 -1.059 -1.293 -3.978 H14B A1IPK 48 A1IPK H14C H16 H 0 0 N N N N N N 23.496 -12.887 -20.329 -2.761 -0.777 -3.934 H14C A1IPK 49 A1IPK H14A H17 H 0 0 N N N N N N 23.395 -14.604 -20.848 -1.573 -0.018 -2.848 H14A A1IPK 50 A1IPK H18A H18 H 0 0 N N N N N N 25.191 -9.948 -13.320 -5.493 0.549 -0.749 H18A A1IPK 51 A1IPK H18B H19 H 0 0 N N N N N N 23.721 -9.215 -12.591 -6.005 1.118 0.858 H18B A1IPK 52 A1IPK H23 H20 H 0 1 N N N N N N 22.599 -12.076 -9.106 -3.896 5.256 1.441 H23 A1IPK 53 A1IPK H27B H21 H 0 0 N N N N N N 20.828 -8.501 -17.712 -7.074 -2.740 3.405 H27B A1IPK 54 A1IPK H1 H22 H 0 1 N N N N N N 20.772 -8.032 -15.979 -6.957 -2.971 1.645 H1 A1IPK 55 A1IPK H27A H23 H 0 0 N N N N N N 22.109 -7.445 -17.025 -5.598 -3.436 2.696 H27A A1IPK 56 A1IPK H31A H24 H 0 0 N N N N N N 23.662 -17.342 -14.726 2.835 0.063 1.308 H31A A1IPK 57 A1IPK H31B H25 H 0 0 N N N N N N 24.805 -17.780 -16.040 3.160 -1.613 0.806 H31B A1IPK 58 A1IPK H34 H26 H 0 1 N N N N N N 27.038 -18.772 -12.368 4.560 -0.798 2.128 H34 A1IPK 59 A1IPK H35 H27 H 0 1 N N N N N N 26.628 -18.771 -9.938 6.775 -0.698 3.193 H35 A1IPK 60 A1IPK H36 H28 H 0 1 N N N N N N 24.628 -17.668 -9.009 8.729 0.067 1.908 H36 A1IPK 61 A1IPK H39B H29 H 0 0 N N N N N N 21.467 -16.265 -8.815 9.876 1.525 0.940 H39B A1IPK 62 A1IPK H39C H30 H 0 0 N N N N N N 22.270 -17.866 -8.950 10.196 -0.150 0.431 H39C A1IPK 63 A1IPK H39A H31 H 0 0 N N N N N N 23.205 -16.437 -8.392 10.721 1.207 -0.594 H39A A1IPK 64 A1IPK H40 H32 H 0 1 N N N N N N 23.436 -16.534 -12.962 6.249 0.634 -1.526 H40 A1IPK 65 A1IPK H16 H33 H 0 1 N N N N N N 24.971 -11.524 -15.167 -3.222 -0.218 -1.034 H16 A1IPK 66 A1IPK H9 H34 H 0 1 N N N N N N 23.049 -15.528 -16.056 0.515 -1.338 1.102 H9 A1IPK 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IPK C14 C12 SING N N 1 A1IPK C13 C12 SING N N 2 A1IPK C12 C11 SING N N 3 A1IPK C11 C10 SING N N 4 A1IPK C27 C26 SING N N 5 A1IPK C26 C25 SING N N 6 A1IPK C10 N9 SING N N 7 A1IPK C10 C15 SING N N 8 A1IPK N9 C8 SING N N 9 A1IPK C8 C31 SING N N 10 A1IPK C8 O7 DOUB N N 11 A1IPK C15 N16 SING N N 12 A1IPK C15 O30 DOUB N N 13 A1IPK C25 O29 DOUB N N 14 A1IPK C25 C17 SING N N 15 A1IPK C31 O32 SING N N 16 A1IPK N16 C17 SING N N 17 A1IPK C17 C18 SING N N 18 A1IPK O32 C33 SING N N 19 A1IPK C18 C19 SING N N 20 A1IPK C33 C40 DOUB Y N 21 A1IPK C33 C34 SING Y N 22 A1IPK C40 C37 SING Y N 23 A1IPK C20 C19 DOUB Y N 24 A1IPK C20 C21 SING Y N 25 A1IPK C19 C24 SING Y N 26 A1IPK C34 C35 DOUB Y N 27 A1IPK C21 C22 DOUB Y N 28 A1IPK C37 O38 SING N N 29 A1IPK C37 C36 DOUB Y N 30 A1IPK C24 C23 DOUB Y N 31 A1IPK C35 C36 SING Y N 32 A1IPK O38 C39 SING N N 33 A1IPK C22 C23 SING Y N 34 A1IPK C10 H10 SING N N 35 A1IPK C13 H13C SING N N 36 A1IPK C13 H13A SING N N 37 A1IPK C13 H13B SING N N 38 A1IPK C17 H17 SING N N 39 A1IPK C20 H20 SING N N 40 A1IPK C21 H21 SING N N 41 A1IPK C22 H22 SING N N 42 A1IPK C24 H24 SING N N 43 A1IPK C26 H26A SING N N 44 A1IPK C26 H26B SING N N 45 A1IPK C11 H11A SING N N 46 A1IPK C11 H11B SING N N 47 A1IPK C12 H12 SING N N 48 A1IPK C14 H14B SING N N 49 A1IPK C14 H14C SING N N 50 A1IPK C14 H14A SING N N 51 A1IPK C18 H18A SING N N 52 A1IPK C18 H18B SING N N 53 A1IPK C23 H23 SING N N 54 A1IPK C27 H27B SING N N 55 A1IPK C27 H1 SING N N 56 A1IPK C27 H27A SING N N 57 A1IPK C31 H31A SING N N 58 A1IPK C31 H31B SING N N 59 A1IPK C34 H34 SING N N 60 A1IPK C35 H35 SING N N 61 A1IPK C36 H36 SING N N 62 A1IPK C39 H39B SING N N 63 A1IPK C39 H39C SING N N 64 A1IPK C39 H39A SING N N 65 A1IPK C40 H40 SING N N 66 A1IPK N16 H16 SING N N 67 A1IPK N9 H9 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IPK InChI InChI 1.06 "InChI=1S/C26H34N2O5/c1-5-24(29)22(15-19-10-7-6-8-11-19)28-26(31)23(14-18(2)3)27-25(30)17-33-21-13-9-12-20(16-21)32-4/h6-13,16,18,22-23H,5,14-15,17H2,1-4H3,(H,27,30)(H,28,31)/t22-,23-/m0/s1" A1IPK InChIKey InChI 1.06 SKKDMKCPTJKHEB-GOTSBHOMSA-N A1IPK SMILES_CANONICAL CACTVS 3.385 "CCC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(C)C)NC(=O)COc2cccc(OC)c2" A1IPK SMILES CACTVS 3.385 "CCC(=O)[CH](Cc1ccccc1)NC(=O)[CH](CC(C)C)NC(=O)COc2cccc(OC)c2" A1IPK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(C)C)NC(=O)COc2cccc(c2)OC" A1IPK SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)C(Cc1ccccc1)NC(=O)C(CC(C)C)NC(=O)COc2cccc(c2)OC" # _pdbx_chem_comp_identifier.comp_id A1IPK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[2-(3-methoxyphenoxy)ethanoylamino]-4-methyl-~{N}-[(2~{S})-3-oxidanylidene-1-phenyl-pentan-2-yl]pentanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IPK "Create component" 2024-09-24 PDBE A1IPK "Modify PCM" 2025-01-20 PDBE A1IPK "Initial release" 2025-01-29 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IPK _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C27 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #