data_A1IR3 # _chem_comp.id A1IR3 _chem_comp.name "6-cyclopropyl-3-phenyl-1~{H}-pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-16 _chem_comp.pdbx_modified_date 2025-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 228.247 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IR3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9H2T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IR3 C13 C1 C 0 1 Y N N N N N -21.954 31.813 -23.866 3.809 0.225 -1.276 C13 A1IR3 1 A1IR3 C15 C2 C 0 1 Y N N N N N -23.348 32.057 -26.119 3.896 0.203 1.120 C15 A1IR3 2 A1IR3 C02 C3 C 0 1 N N N N N N -21.881 27.592 -26.087 -0.382 0.981 0.081 C02 A1IR3 3 A1IR3 C04 C4 C 0 1 N N N N N N -23.167 25.460 -25.765 -2.331 -0.345 0.142 C04 A1IR3 4 A1IR3 C05 C5 C 0 1 N N N N N N -23.195 23.997 -26.107 -3.833 -0.444 0.196 C05 A1IR3 5 A1IR3 C06 C6 C 0 1 N N N N N N -22.789 23.471 -27.482 -4.619 0.846 0.438 C06 A1IR3 6 A1IR3 C07 C7 C 0 1 N N N N N N -21.999 23.080 -26.238 -4.625 0.196 -0.947 C07 A1IR3 7 A1IR3 C08 C8 C 0 1 N N N N N N -24.217 26.135 -24.959 -1.577 -1.465 0.106 C08 A1IR3 8 A1IR3 C09 C9 C 0 1 N N N N N N -24.052 27.597 -24.730 -0.168 -1.345 0.056 C09 A1IR3 9 A1IR3 C11 C10 C 0 1 Y N N N N N -22.762 29.692 -25.100 1.787 0.011 -0.004 C11 A1IR3 10 A1IR3 C12 C11 C 0 1 Y N N N N N -22.025 30.296 -23.925 2.435 0.091 -1.230 C12 A1IR3 11 A1IR3 C14 C12 C 0 1 Y N N N N N -22.608 32.677 -24.943 4.539 0.278 -0.102 C14 A1IR3 12 A1IR3 C16 C13 C 0 1 Y N N N N N -23.415 30.542 -26.185 2.522 0.075 1.172 C16 A1IR3 13 A1IR3 N03 N1 N 0 1 N N N N N N -22.027 26.157 -26.317 -1.723 0.882 0.129 N03 A1IR3 14 A1IR3 N10 N2 N 0 1 N N N N N N -22.903 28.279 -25.284 0.393 -0.119 0.045 N10 A1IR3 15 A1IR3 O01 O1 O 0 1 N N N N N N -20.950 28.187 -26.522 0.137 2.080 0.065 O01 A1IR3 16 A1IR3 O17 O2 O 0 1 N N N N N N -24.841 28.224 -24.094 0.532 -2.341 0.023 O17 A1IR3 17 A1IR3 H131 H1 H 0 0 N N N N N N -21.432 32.288 -23.049 4.313 0.283 -2.228 H131 A1IR3 18 A1IR3 H151 H2 H 0 0 N N N N N N -23.808 32.672 -26.878 4.468 0.253 2.034 H151 A1IR3 19 A1IR3 H051 H3 H 0 0 N N N N N N -24.081 23.483 -25.706 -4.228 -1.363 0.629 H051 A1IR3 20 A1IR3 H062 H4 H 0 0 N N N N N N -23.415 22.726 -27.994 -5.531 0.777 1.031 H062 A1IR3 21 A1IR3 H061 H5 H 0 0 N N N N N N -22.347 24.152 -28.225 -4.049 1.767 0.558 H061 A1IR3 22 A1IR3 H071 H6 H 0 0 N N N N N N -20.984 23.476 -26.085 -4.058 0.688 -1.737 H071 A1IR3 23 A1IR3 H072 H7 H 0 0 N N N N N N -22.052 22.050 -25.855 -5.541 -0.302 -1.265 H072 A1IR3 24 A1IR3 H081 H8 H 0 0 N N N N N N -25.060 25.591 -24.558 -2.044 -2.439 0.115 H081 A1IR3 25 A1IR3 H121 H9 H 0 0 N N N N N N -21.571 29.678 -23.164 1.865 0.050 -2.146 H121 A1IR3 26 A1IR3 H141 H10 H 0 0 N N N N N N -22.544 33.752 -24.868 5.614 0.378 -0.141 H141 A1IR3 27 A1IR3 H161 H11 H 0 0 N N N N N N -23.928 30.063 -27.006 2.020 0.025 2.126 H161 A1IR3 28 A1IR3 H031 H12 H 0 0 N N N N N N -21.344 25.660 -26.852 -2.264 1.686 0.155 H031 A1IR3 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IR3 O01 C02 DOUB N N 1 A1IR3 C02 N10 SING N N 2 A1IR3 C02 N03 SING N N 3 A1IR3 N03 C04 SING N N 4 A1IR3 C04 C05 SING N N 5 A1IR3 C04 C08 DOUB N N 6 A1IR3 C05 C07 SING N N 7 A1IR3 C05 C06 SING N N 8 A1IR3 C06 C07 SING N N 9 A1IR3 C08 C09 SING N N 10 A1IR3 C09 N10 SING N N 11 A1IR3 C09 O17 DOUB N N 12 A1IR3 N10 C11 SING N N 13 A1IR3 C11 C16 DOUB Y N 14 A1IR3 C11 C12 SING Y N 15 A1IR3 C12 C13 DOUB Y N 16 A1IR3 C13 C14 SING Y N 17 A1IR3 C14 C15 DOUB Y N 18 A1IR3 C15 C16 SING Y N 19 A1IR3 C13 H131 SING N N 20 A1IR3 C15 H151 SING N N 21 A1IR3 C05 H051 SING N N 22 A1IR3 C06 H062 SING N N 23 A1IR3 C06 H061 SING N N 24 A1IR3 C07 H071 SING N N 25 A1IR3 C07 H072 SING N N 26 A1IR3 C08 H081 SING N N 27 A1IR3 C12 H121 SING N N 28 A1IR3 C14 H141 SING N N 29 A1IR3 C16 H161 SING N N 30 A1IR3 N03 H031 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IR3 InChI InChI 1.06 "InChI=1S/C13H12N2O2/c16-12-8-11(9-6-7-9)14-13(17)15(12)10-4-2-1-3-5-10/h1-5,8-9H,6-7H2,(H,14,17)" A1IR3 InChIKey InChI 1.06 YSTWXKANMCMRMR-UHFFFAOYSA-N A1IR3 SMILES_CANONICAL CACTVS 3.385 "O=C1NC(=CC(=O)N1c2ccccc2)C3CC3" A1IR3 SMILES CACTVS 3.385 "O=C1NC(=CC(=O)N1c2ccccc2)C3CC3" A1IR3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2C(=O)C=C(NC2=O)C3CC3" A1IR3 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2C(=O)C=C(NC2=O)C3CC3" # _pdbx_chem_comp_identifier.comp_id A1IR3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-cyclopropyl-3-phenyl-1~{H}-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IR3 "Create component" 2024-10-16 PDBE A1IR3 "Initial release" 2025-08-27 RCSB #