data_A1IR7 # _chem_comp.id A1IR7 _chem_comp.name "(3aR,8aR)-2-[8,8-bis(chloranyl)-7-propan-2-yl-7$l^{3}-oxa-8$l^{5}-ruthenabicyclo[4.3.0]nona-1(6),2,4-trien-8-yl]-1,3-bis(2,4,6-trimethylphenyl)-3a,4,5,7,8,8a-hexahydroimidazo[4,5-d][1,2,7]thiadiazepine 6,6-dioxide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H41 Cl2 N4 O3 Ru S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2024-10-23 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 745.745 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IR7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 9H3C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IR7 C10 C1 C 0 1 N N N N N N -2.970 27.244 -16.610 ? ? ? C10 A1IR7 1 A1IR7 C13 C2 C 0 1 Y N N N N N 1.113 28.523 -16.869 ? ? ? C13 A1IR7 2 A1IR7 C15 C3 C 0 1 N N N N N N 1.621 27.681 -14.588 ? ? ? C15 A1IR7 3 A1IR7 C17 C4 C 0 1 N N N N N N -1.539 27.587 -13.394 ? ? ? C17 A1IR7 4 A1IR7 C21 C5 C 0 1 N N N N N N -1.167 30.599 -14.597 ? ? ? C21 A1IR7 5 A1IR7 C22 C6 C 0 1 Y N N N N N -1.229 32.083 -14.542 ? ? ? C22 A1IR7 6 A1IR7 C26 C7 C 0 1 N N N N N N -3.467 30.719 -10.817 ? ? ? C26 A1IR7 7 A1IR7 C28 C8 C 0 1 Y N N N N N -1.804 34.006 -13.195 ? ? ? C28 A1IR7 8 A1IR7 O01 O1 O 0 1 N N N N N N -1.163 21.500 -12.946 ? ? ? O01 A1IR7 9 A1IR7 S02 S1 S 0 1 N N N N N N -0.513 22.560 -13.639 ? ? ? S02 A1IR7 10 A1IR7 N03 N1 N 0 1 N N N N N N 0.005 23.551 -12.489 ? ? ? N03 A1IR7 11 A1IR7 C04 C9 C 0 1 N N N N N N -0.897 24.459 -11.790 ? ? ? C04 A1IR7 12 A1IR7 C05 C10 C 0 1 N N R N N N -1.665 25.329 -12.766 ? ? ? C05 A1IR7 13 A1IR7 C06 C11 C 0 1 N N R N N N -0.935 25.413 -14.091 ? ? ? C06 A1IR7 14 A1IR7 N07 N2 N 0 1 N N N N N N -1.137 26.844 -14.417 ? ? ? N07 A1IR7 15 A1IR7 C08 C12 C 0 1 Y N N N N N -0.654 27.443 -15.639 ? ? ? C08 A1IR7 16 A1IR7 C09 C13 C 0 1 Y N N N N N -1.533 27.691 -16.692 ? ? ? C09 A1IR7 17 A1IR7 C11 C14 C 0 1 Y N N N N N -1.069 28.315 -17.842 ? ? ? C11 A1IR7 18 A1IR7 C12 C15 C 0 1 Y N N N N N 0.253 28.729 -17.923 ? ? ? C12 A1IR7 19 A1IR7 C14 C16 C 0 1 Y N N N N N 0.669 27.900 -15.720 ? ? ? C14 A1IR7 20 A1IR7 C16 C17 C 0 1 N N N N N N 0.749 29.408 -19.160 ? ? ? C16 A1IR7 21 A1IR7 RU18 RU1 RU 2 0 N N N N N N -1.662 29.553 -13.216 ? ? ? RU18 A1IR7 22 A1IR7 CL19 CL1 CL 0 0 N N N N N N 0.878 29.482 -11.853 ? ? ? CL19 A1IR7 23 A1IR7 CL20 CL2 CL 0 0 N N N N N N -4.525 29.663 -13.558 ? ? ? CL20 A1IR7 24 A1IR7 C23 C18 C 0 1 Y N N N N N -1.705 32.622 -13.363 ? ? ? C23 A1IR7 25 A1IR7 O24 O2 O 0 1 N N N N N N -2.005 31.670 -12.419 ? ? ? O24 A1IR7 26 A1IR7 C25 C19 C 0 1 N N N N N N -2.931 31.998 -11.338 ? ? ? C25 A1IR7 27 A1IR7 C27 C20 C 0 1 N N N N N N -2.180 32.651 -10.235 ? ? ? C27 A1IR7 28 A1IR7 C29 C21 C 0 1 Y N N N N N -1.424 34.845 -14.247 ? ? ? C29 A1IR7 29 A1IR7 C30 C22 C 0 1 Y N N N N N -0.948 34.299 -15.446 ? ? ? C30 A1IR7 30 A1IR7 C31 C23 C 0 1 Y N N N N N -0.848 32.912 -15.598 ? ? ? C31 A1IR7 31 A1IR7 N32 N3 N 0 1 N N N N N N -1.869 26.750 -12.386 ? ? ? N32 A1IR7 32 A1IR7 C33 C24 C 0 1 Y N N N N N -2.419 27.107 -11.096 ? ? ? C33 A1IR7 33 A1IR7 C34 C25 C 0 1 Y N N N N N -1.584 27.526 -10.056 ? ? ? C34 A1IR7 34 A1IR7 C35 C26 C 0 1 N N N N N N -0.103 27.603 -10.257 ? ? ? C35 A1IR7 35 A1IR7 C36 C27 C 0 1 Y N N N N N -2.128 27.868 -8.828 ? ? ? C36 A1IR7 36 A1IR7 C37 C28 C 0 1 Y N N N N N -3.493 27.802 -8.630 ? ? ? C37 A1IR7 37 A1IR7 C38 C29 C 0 1 Y N N N N N -4.328 27.393 -9.653 ? ? ? C38 A1IR7 38 A1IR7 C39 C30 C 0 1 Y N N N N N -3.800 27.047 -10.888 ? ? ? C39 A1IR7 39 A1IR7 C40 C31 C 0 1 N N N N N N -4.718 26.609 -12.000 ? ? ? C40 A1IR7 40 A1IR7 C41 C32 C 0 1 N N N N N N -4.074 28.185 -7.299 ? ? ? C41 A1IR7 41 A1IR7 C42 C33 C 0 1 N N N N N N -1.451 24.467 -15.142 ? ? ? C42 A1IR7 42 A1IR7 N43 N4 N 0 1 N N N N N N -1.607 23.108 -14.669 ? ? ? N43 A1IR7 43 A1IR7 O44 O3 O 0 1 N N N N N N 0.633 22.285 -14.442 ? ? ? O44 A1IR7 44 A1IR7 H1 H1 H 0 1 N N N N N N -3.581 28.050 -16.179 ? ? ? H1 A1IR7 45 A1IR7 H2 H2 H 0 1 N N N N N N -3.338 27.005 -17.619 ? ? ? H2 A1IR7 46 A1IR7 H3 H3 H 0 1 N N N N N N -3.040 26.350 -15.973 ? ? ? H3 A1IR7 47 A1IR7 H4 H4 H 0 1 N N N N N N 2.140 28.850 -16.941 ? ? ? H4 A1IR7 48 A1IR7 H5 H5 H 0 1 N N N N N N 1.581 28.541 -13.903 ? ? ? H5 A1IR7 49 A1IR7 H6 H6 H 0 1 N N N N N N 1.341 26.766 -14.045 ? ? ? H6 A1IR7 50 A1IR7 H7 H7 H 0 1 N N N N N N 2.642 27.575 -14.983 ? ? ? H7 A1IR7 51 A1IR7 H11 H11 H 0 1 N N N N N N -4.172 30.923 -9.997 ? ? ? H11 A1IR7 52 A1IR7 H12 H12 H 0 1 N N N N N N -3.989 30.184 -11.624 ? ? ? H12 A1IR7 53 A1IR7 H13 H13 H 0 1 N N N N N N -2.639 30.100 -10.442 ? ? ? H13 A1IR7 54 A1IR7 H14 H14 H 0 1 N N N N N N -2.168 34.421 -12.267 ? ? ? H14 A1IR7 55 A1IR7 H15 H15 H 0 1 N N N N N N 0.420 22.973 -11.787 ? ? ? H15 A1IR7 56 A1IR7 H16 H16 H 0 1 N N N N N N -1.611 23.869 -11.197 ? ? ? H16 A1IR7 57 A1IR7 H17 H17 H 0 1 N N N N N N -0.309 25.104 -11.121 ? ? ? H17 A1IR7 58 A1IR7 H18 H18 H 0 1 N N N N N N -2.647 24.866 -12.942 ? ? ? H18 A1IR7 59 A1IR7 H19 H19 H 0 1 N N N N N N 0.135 25.221 -13.925 ? ? ? H19 A1IR7 60 A1IR7 H20 H20 H 0 1 N N N N N N -1.737 28.478 -18.674 ? ? ? H20 A1IR7 61 A1IR7 H21 H21 H 0 1 N N N N N N 1.136 28.655 -19.862 ? ? ? H21 A1IR7 62 A1IR7 H22 H22 H 0 1 N N N N N N -0.078 29.959 -19.632 ? ? ? H22 A1IR7 63 A1IR7 H23 H23 H 0 1 N N N N N N 1.553 30.110 -18.895 ? ? ? H23 A1IR7 64 A1IR7 H24 H24 H 0 1 N N N N N N -3.744 32.647 -11.695 ? ? ? H24 A1IR7 65 A1IR7 H25 H25 H 0 1 N N N N N N -1.767 33.607 -10.588 ? ? ? H25 A1IR7 66 A1IR7 H26 H26 H 0 1 N N N N N N -2.858 32.835 -9.389 ? ? ? H26 A1IR7 67 A1IR7 H27 H27 H 0 1 N N N N N N -1.359 31.994 -9.911 ? ? ? H27 A1IR7 68 A1IR7 H28 H28 H 0 1 N N N N N N -1.498 35.917 -14.135 ? ? ? H28 A1IR7 69 A1IR7 H29 H29 H 0 1 N N N N N N -0.657 34.951 -16.256 ? ? ? H29 A1IR7 70 A1IR7 H30 H30 H 0 1 N N N N N N -0.481 32.488 -16.521 ? ? ? H30 A1IR7 71 A1IR7 H31 H31 H 0 1 N N N N N N 0.166 28.604 -10.624 ? ? ? H31 A1IR7 72 A1IR7 H32 H32 H 0 1 N N N N N N 0.407 27.414 -9.301 ? ? ? H32 A1IR7 73 A1IR7 H33 H33 H 0 1 N N N N N N -1.482 28.187 -8.023 ? ? ? H33 A1IR7 74 A1IR7 H34 H34 H 0 1 N N N N N N -5.394 27.343 -9.490 ? ? ? H34 A1IR7 75 A1IR7 H35 H35 H 0 1 N N N N N N -4.852 25.518 -11.957 ? ? ? H35 A1IR7 76 A1IR7 H36 H36 H 0 1 N N N N N N -5.694 27.103 -11.885 ? ? ? H36 A1IR7 77 A1IR7 H37 H37 H 0 1 N N N N N N -4.278 26.887 -12.969 ? ? ? H37 A1IR7 78 A1IR7 H38 H38 H 0 1 N N N N N N -4.307 29.260 -7.296 ? ? ? H38 A1IR7 79 A1IR7 H39 H39 H 0 1 N N N N N N -4.995 27.610 -7.122 ? ? ? H39 A1IR7 80 A1IR7 H40 H40 H 0 1 N N N N N N -3.346 27.965 -6.504 ? ? ? H40 A1IR7 81 A1IR7 H41 H41 H 0 1 N N N N N N -2.430 24.830 -15.487 ? ? ? H41 A1IR7 82 A1IR7 H42 H42 H 0 1 N N N N N N -0.744 24.463 -15.985 ? ? ? H42 A1IR7 83 A1IR7 H43 H43 H 0 1 N N N N N N -1.594 22.508 -15.469 ? ? ? H43 A1IR7 84 A1IR7 H8 H8 H 0 1 N N N N N N 0.207 26.847 -10.994 ? ? ? H8 A1IR7 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IR7 C10 C09 SING N N 1 A1IR7 C13 C12 DOUB Y N 2 A1IR7 C13 C14 SING Y N 3 A1IR7 C15 C14 SING N N 4 A1IR7 C17 N07 SING N N 5 A1IR7 C17 RU18 SING N N 6 A1IR7 C17 N32 SING N N 7 A1IR7 C21 C22 SING N N 8 A1IR7 C21 RU18 DOUB N N 9 A1IR7 C22 C23 DOUB Y N 10 A1IR7 C22 C31 SING Y N 11 A1IR7 C26 C25 SING N N 12 A1IR7 C28 C23 SING Y N 13 A1IR7 C28 C29 DOUB Y N 14 A1IR7 O01 S02 DOUB N N 15 A1IR7 S02 N03 SING N N 16 A1IR7 S02 N43 SING N N 17 A1IR7 S02 O44 DOUB N N 18 A1IR7 N03 C04 SING N N 19 A1IR7 C04 C05 SING N N 20 A1IR7 C05 C06 SING N N 21 A1IR7 C05 N32 SING N N 22 A1IR7 C06 N07 SING N N 23 A1IR7 C06 C42 SING N N 24 A1IR7 N07 C08 SING N N 25 A1IR7 C08 C09 SING Y N 26 A1IR7 C08 C14 DOUB Y N 27 A1IR7 C09 C11 DOUB Y N 28 A1IR7 C11 C12 SING Y N 29 A1IR7 C12 C16 SING N N 30 A1IR7 RU18 O24 SING N N 31 A1IR7 C23 O24 SING N N 32 A1IR7 O24 C25 SING N N 33 A1IR7 C25 C27 SING N N 34 A1IR7 C29 C30 SING Y N 35 A1IR7 C30 C31 DOUB Y N 36 A1IR7 N32 C33 SING N N 37 A1IR7 C33 C34 DOUB Y N 38 A1IR7 C33 C39 SING Y N 39 A1IR7 C34 C35 SING N N 40 A1IR7 C34 C36 SING Y N 41 A1IR7 C36 C37 DOUB Y N 42 A1IR7 C37 C38 SING Y N 43 A1IR7 C37 C41 SING N N 44 A1IR7 C38 C39 DOUB Y N 45 A1IR7 C39 C40 SING N N 46 A1IR7 C42 N43 SING N N 47 A1IR7 RU18 CL20 SING N N 48 A1IR7 C10 H1 SING N N 49 A1IR7 C10 H2 SING N N 50 A1IR7 C10 H3 SING N N 51 A1IR7 C13 H4 SING N N 52 A1IR7 C15 H5 SING N N 53 A1IR7 C15 H6 SING N N 54 A1IR7 C15 H7 SING N N 55 A1IR7 C26 H11 SING N N 56 A1IR7 C26 H12 SING N N 57 A1IR7 C26 H13 SING N N 58 A1IR7 C28 H14 SING N N 59 A1IR7 N03 H15 SING N N 60 A1IR7 C04 H16 SING N N 61 A1IR7 C04 H17 SING N N 62 A1IR7 C05 H18 SING N N 63 A1IR7 C06 H19 SING N N 64 A1IR7 C11 H20 SING N N 65 A1IR7 C16 H21 SING N N 66 A1IR7 C16 H22 SING N N 67 A1IR7 C16 H23 SING N N 68 A1IR7 C25 H24 SING N N 69 A1IR7 C27 H25 SING N N 70 A1IR7 C27 H26 SING N N 71 A1IR7 C27 H27 SING N N 72 A1IR7 C29 H28 SING N N 73 A1IR7 C30 H29 SING N N 74 A1IR7 C31 H30 SING N N 75 A1IR7 C35 H31 SING N N 76 A1IR7 C35 H32 SING N N 77 A1IR7 C36 H33 SING N N 78 A1IR7 C38 H34 SING N N 79 A1IR7 C40 H35 SING N N 80 A1IR7 C40 H36 SING N N 81 A1IR7 C40 H37 SING N N 82 A1IR7 C41 H38 SING N N 83 A1IR7 C41 H39 SING N N 84 A1IR7 C41 H40 SING N N 85 A1IR7 C42 H41 SING N N 86 A1IR7 C42 H42 SING N N 87 A1IR7 N43 H43 SING N N 88 A1IR7 RU18 CL19 SING N N 89 A1IR7 C35 H8 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IR7 InChI InChI 1.06 "InChI=1S/C23H31N4O2S.C10H12O.2ClH.Ru/c1-14-7-16(3)22(17(4)8-14)26-13-27(23-18(5)9-15(2)10-19(23)6)21-12-25-30(28,29)24-11-20(21)26;1-8(2)11-10-7-5-4-6-9(10)3;;;/h7-10,13,20-21,24-25H,11-12H2,1-6H3;3-8H,1-2H3;2*1H;/q;;;;+4/p-2/t20-,21-;;;;/m1..../s1" A1IR7 InChIKey InChI 1.06 IQBORUPCKIOGRA-ZPVXIRCVSA-L A1IR7 SMILES_CANONICAL CACTVS 3.385 "Cc1ccccc1OC(C)C.Cc2cc(C)c(N3CN([C@@H]4CN[S](=O)(=O)NC[C@@H]34)c5c(C)cc(C)cc5C)c(C)c2.Cl[Ru++]Cl" A1IR7 SMILES CACTVS 3.385 "Cc1ccccc1OC(C)C.Cc2cc(C)c(N3CN([CH]4CN[S](=O)(=O)NC[CH]34)c5c(C)cc(C)cc5C)c(C)c2.Cl[Ru++]Cl" A1IR7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(c(c1)C)N2[C@@H]3CNS(=O)(=O)NC[C@H]3N([C]2[Ru+2]4(=[C]c5ccccc5O4C(C)C)(Cl)Cl)c6c(cc(cc6C)C)C)C" A1IR7 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(c(c1)C)N2C3CNS(=O)(=O)NCC3N([C]2[Ru+2]4(=[C]c5ccccc5O4C(C)C)(Cl)Cl)c6c(cc(cc6C)C)C)C" # _pdbx_chem_comp_identifier.comp_id A1IR7 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{a}~{R},8~{a}~{R})-2-[8,8-bis(chloranyl)-7-propan-2-yl-7$l^{3}-oxa-8$l^{5}-ruthenabicyclo[4.3.0]nona-1(6),2,4-trien-8-yl]-1,3-bis(2,4,6-trimethylphenyl)-3~{a},4,5,7,8,8~{a}-hexahydroimidazo[4,5-d][1,2,7]thiadiazepine 6,6-dioxide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IR7 "Create component" 2024-10-23 PDBE A1IR7 "Initial release" 2025-10-22 RCSB #