data_A1IR8 # _chem_comp.id A1IR8 _chem_comp.name "2-[[4-[2-(dimethylamino)ethyl-methyl-amino]phenyl]amino]-5-ethyl-8-phenyl-pyrido[2,3-d]pyrimidin-7-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H30 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-23 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 442.556 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9H42 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IR8 C4 C1 C 0 1 N N N N N N -53.412 0.707 -25.771 -4.999 2.192 -0.700 C4 A1IR8 1 A1IR8 C14 C2 C 0 1 Y N N N N N -51.224 1.318 -18.986 1.527 -0.723 0.558 C14 A1IR8 2 A1IR8 C5 C3 C 0 1 N N N N N N -52.162 0.208 -25.479 -5.292 0.829 -0.497 C5 A1IR8 3 A1IR8 C6 C4 C 0 1 Y N N N N N -50.384 -0.183 -23.901 -4.672 -1.417 -0.053 C6 A1IR8 4 A1IR8 C11 C5 C 0 1 Y N N N N N -50.293 -1.197 -22.973 -4.734 -2.284 -1.136 C11 A1IR8 5 A1IR8 C7 C6 C 0 1 Y N N N N N -49.279 0.250 -24.596 -4.948 -1.886 1.224 C7 A1IR8 6 A1IR8 C8 C7 C 0 1 Y N N N N N -48.052 -0.334 -24.330 -5.283 -3.213 1.414 C8 A1IR8 7 A1IR8 C9 C8 C 0 1 Y N N N N N -47.945 -1.337 -23.382 -5.344 -4.074 0.333 C9 A1IR8 8 A1IR8 C10 C9 C 0 1 Y N N N N N -49.062 -1.769 -22.703 -5.069 -3.609 -0.940 C10 A1IR8 9 A1IR8 C12 C10 C 0 1 Y N N N N N -52.436 1.039 -23.132 -3.009 0.302 -0.182 C12 A1IR8 10 A1IR8 C13 C11 C 0 1 Y N N N N N -52.701 1.815 -20.985 -0.780 -0.183 0.119 C13 A1IR8 11 A1IR8 N1 N1 N 0 1 N N N N N N -51.690 0.382 -24.174 -4.327 -0.074 -0.248 N1 A1IR8 12 A1IR8 N2 N2 N 0 1 Y N N N N N -51.927 1.173 -21.904 -2.044 -0.576 0.062 N2 A1IR8 13 A1IR8 C3 C12 C 0 1 N N N N N N -54.166 1.385 -24.820 -3.713 2.630 -0.649 C3 A1IR8 14 A1IR8 N3 N3 N 0 1 N N N N N N -52.278 1.949 -19.695 0.197 -1.125 0.376 N3 A1IR8 15 A1IR8 C1 C13 C 0 1 N N N N N N -56.050 0.622 -25.807 -3.288 4.792 0.490 C1 A1IR8 16 A1IR8 C2 C14 C 0 1 N N N N N N -55.504 1.727 -25.278 -3.383 4.085 -0.863 C2 A1IR8 17 A1IR8 O1 O1 O 0 1 N N N N N N -51.537 -0.346 -26.370 -6.452 0.458 -0.548 O1 A1IR8 18 A1IR8 C15 C15 C 0 1 Y N N N N N -50.192 0.604 -19.604 1.807 0.492 1.170 C15 A1IR8 19 A1IR8 C16 C16 C 0 1 Y N N N N N -49.166 0.051 -18.856 3.117 0.885 1.355 C16 A1IR8 20 A1IR8 C17 C17 C 0 1 Y N N N N N -49.114 0.176 -17.444 4.155 0.066 0.929 C17 A1IR8 21 A1IR8 N4 N4 N 0 1 N N N N N N -48.109 -0.393 -16.658 5.483 0.465 1.117 N4 A1IR8 22 A1IR8 C18 C18 C 0 1 N N N N N N -47.748 0.226 -15.386 5.779 1.746 1.763 C18 A1IR8 23 A1IR8 C19 C19 C 0 1 N N N N N N -47.432 -1.677 -16.922 6.578 -0.399 0.668 C19 A1IR8 24 A1IR8 C20 C20 C 0 1 N N N N N N -46.943 -2.094 -18.313 6.945 -0.048 -0.775 C20 A1IR8 25 A1IR8 N5 N5 N 0 1 N N N N N N -45.468 -2.000 -18.555 8.043 -0.914 -1.225 N5 A1IR8 26 A1IR8 C21 C21 C 0 1 N N N N N N -45.197 -1.743 -19.966 8.266 -0.774 -2.671 C21 A1IR8 27 A1IR8 C22 C22 C 0 1 N N N N N N -44.686 -3.181 -18.183 9.275 -0.637 -0.474 C22 A1IR8 28 A1IR8 C23 C23 C 0 1 Y N N N N N -50.164 0.915 -16.846 3.875 -1.148 0.317 C23 A1IR8 29 A1IR8 C24 C24 C 0 1 Y N N N N N -51.187 1.468 -17.599 2.564 -1.542 0.132 C24 A1IR8 30 A1IR8 N6 N6 N 0 1 Y N N N N N -53.923 2.342 -21.230 -0.417 1.082 -0.060 N6 A1IR8 31 A1IR8 C25 C25 C 0 1 Y N N N N N -54.423 2.195 -22.442 -1.311 2.022 -0.308 C25 A1IR8 32 A1IR8 C26 C26 C 0 1 Y N N N N N -53.714 1.550 -23.474 -2.660 1.656 -0.379 C26 A1IR8 33 A1IR8 H4 H1 H 0 1 N N N N N N -53.816 0.568 -26.763 -5.798 2.890 -0.902 H4 A1IR8 34 A1IR8 H9 H2 H 0 1 N N N N N N -51.177 -1.544 -22.459 -4.520 -1.922 -2.131 H9 A1IR8 35 A1IR8 H5 H3 H 0 1 N N N N N N -49.367 1.032 -25.336 -4.901 -1.215 2.069 H5 A1IR8 36 A1IR8 H6 H4 H 0 1 N N N N N N -47.173 -0.005 -24.865 -5.497 -3.579 2.407 H6 A1IR8 37 A1IR8 H7 H5 H 0 1 N N N N N N -46.983 -1.782 -23.175 -5.606 -5.110 0.484 H7 A1IR8 38 A1IR8 H8 H6 H 0 1 N N N N N N -48.978 -2.551 -21.963 -5.117 -4.284 -1.782 H8 A1IR8 39 A1IR8 H10 H7 H 0 1 N N N N N N -52.803 2.607 -19.155 -0.037 -2.065 0.429 H10 A1IR8 40 A1IR8 H2 H8 H 0 1 N N N N N N -57.066 0.849 -26.164 -4.242 4.708 1.012 H2 A1IR8 41 A1IR8 H1 H9 H 0 1 N N N N N N -55.434 0.276 -26.650 -2.505 4.326 1.089 H1 A1IR8 42 A1IR8 H3 H10 H 0 1 N N N N N N -55.448 2.519 -26.040 -2.430 4.168 -1.384 H3 A1IR8 43 A1IR8 H11 H11 H 0 1 N N N N N N -50.195 0.483 -20.677 1.000 1.129 1.501 H11 A1IR8 44 A1IR8 H12 H12 H 0 1 N N N N N N -48.382 -0.492 -19.363 3.335 1.830 1.831 H12 A1IR8 45 A1IR8 H13 H13 H 0 1 N N N N N N -46.945 -0.355 -14.910 5.862 1.600 2.840 H13 A1IR8 46 A1IR8 H14 H14 H 0 1 N N N N N N -47.400 1.254 -15.564 6.719 2.140 1.376 H14 A1IR8 47 A1IR8 H15 H15 H 0 1 N N N N N N -48.627 0.246 -14.725 4.976 2.453 1.553 H15 A1IR8 48 A1IR8 H17 H16 H 0 1 N N N N N N -48.133 -2.461 -16.600 7.446 -0.249 1.311 H17 A1IR8 49 A1IR8 H16 H17 H 0 1 N N N N N N -46.544 -1.690 -16.273 6.263 -1.441 0.720 H16 A1IR8 50 A1IR8 H19 H18 H 0 1 N N N N N N -47.445 -1.451 -19.051 6.078 -0.197 -1.418 H19 A1IR8 51 A1IR8 H18 H19 H 0 1 N N N N N N -47.243 -3.140 -18.474 7.261 0.994 -0.826 H18 A1IR8 52 A1IR8 H22 H21 H 0 1 N N N N N N -44.111 -1.677 -20.125 8.520 0.261 -2.900 H22 A1IR8 53 A1IR8 H20 H22 H 0 1 N N N N N N -45.607 -2.563 -20.573 9.083 -1.426 -2.977 H20 A1IR8 54 A1IR8 H21 H23 H 0 1 N N N N N N -45.669 -0.795 -20.263 7.358 -1.052 -3.207 H21 A1IR8 55 A1IR8 H25 H24 H 0 1 N N N N N N -44.858 -3.416 -17.122 9.101 -0.816 0.587 H25 A1IR8 56 A1IR8 H23 H25 H 0 1 N N N N N N -44.996 -4.036 -18.802 10.071 -1.292 -0.827 H23 A1IR8 57 A1IR8 H24 H26 H 0 1 N N N N N N -43.617 -2.979 -18.345 9.566 0.403 -0.624 H24 A1IR8 58 A1IR8 H26 H27 H 0 1 N N N N N N -50.167 1.051 -15.775 4.682 -1.785 -0.013 H26 A1IR8 59 A1IR8 H27 H28 H 0 1 N N N N N N -51.969 2.025 -17.104 2.346 -2.489 -0.339 H27 A1IR8 60 A1IR8 H28 H29 H 0 1 N N N N N N -55.409 2.582 -22.650 -1.008 3.049 -0.453 H28 A1IR8 61 A1IR8 H29 H29 H 0 1 N N N N N N -56.098 -0.166 -25.041 -3.050 5.844 0.335 H29 A1IR8 62 A1IR8 H30 H30 H 0 1 N N N N N N -56.112 2.076 -24.430 -4.166 4.550 -1.462 H30 A1IR8 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IR8 O1 C5 DOUB N N 1 A1IR8 C1 C2 SING N N 2 A1IR8 C4 C5 SING N N 3 A1IR8 C4 C3 DOUB N N 4 A1IR8 C5 N1 SING N N 5 A1IR8 C2 C3 SING N N 6 A1IR8 C3 C26 SING N N 7 A1IR8 C7 C8 DOUB Y N 8 A1IR8 C7 C6 SING Y N 9 A1IR8 C8 C9 SING Y N 10 A1IR8 N1 C6 SING N N 11 A1IR8 N1 C12 SING N N 12 A1IR8 C6 C11 DOUB Y N 13 A1IR8 C26 C12 DOUB Y N 14 A1IR8 C26 C25 SING Y N 15 A1IR8 C9 C10 DOUB Y N 16 A1IR8 C12 N2 SING Y N 17 A1IR8 C11 C10 SING Y N 18 A1IR8 C25 N6 DOUB Y N 19 A1IR8 N2 C13 DOUB Y N 20 A1IR8 N6 C13 SING Y N 21 A1IR8 C13 N3 SING N N 22 A1IR8 C21 N5 SING N N 23 A1IR8 N3 C14 SING N N 24 A1IR8 C15 C14 DOUB Y N 25 A1IR8 C15 C16 SING Y N 26 A1IR8 C14 C24 SING Y N 27 A1IR8 C16 C17 DOUB Y N 28 A1IR8 N5 C20 SING N N 29 A1IR8 N5 C22 SING N N 30 A1IR8 C20 C19 SING N N 31 A1IR8 C24 C23 DOUB Y N 32 A1IR8 C17 C23 SING Y N 33 A1IR8 C17 N4 SING N N 34 A1IR8 C19 N4 SING N N 35 A1IR8 N4 C18 SING N N 36 A1IR8 C4 H4 SING N N 37 A1IR8 C11 H9 SING N N 38 A1IR8 C7 H5 SING N N 39 A1IR8 C8 H6 SING N N 40 A1IR8 C9 H7 SING N N 41 A1IR8 C10 H8 SING N N 42 A1IR8 N3 H10 SING N N 43 A1IR8 C1 H2 SING N N 44 A1IR8 C1 H1 SING N N 45 A1IR8 C2 H3 SING N N 46 A1IR8 C15 H11 SING N N 47 A1IR8 C16 H12 SING N N 48 A1IR8 C18 H13 SING N N 49 A1IR8 C18 H14 SING N N 50 A1IR8 C18 H15 SING N N 51 A1IR8 C19 H17 SING N N 52 A1IR8 C19 H16 SING N N 53 A1IR8 C20 H19 SING N N 54 A1IR8 C20 H18 SING N N 55 A1IR8 C21 H22 SING N N 56 A1IR8 C21 H20 SING N N 57 A1IR8 C21 H21 SING N N 58 A1IR8 C22 H25 SING N N 59 A1IR8 C22 H23 SING N N 60 A1IR8 C22 H24 SING N N 61 A1IR8 C23 H26 SING N N 62 A1IR8 C24 H27 SING N N 63 A1IR8 C25 H28 SING N N 64 A1IR8 C1 H29 SING N N 65 A1IR8 C2 H30 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IR8 InChI InChI 1.06 "InChI=1S/C26H30N6O/c1-5-19-17-24(33)32(22-9-7-6-8-10-22)25-23(19)18-27-26(29-25)28-20-11-13-21(14-12-20)31(4)16-15-30(2)3/h6-14,17-18H,5,15-16H2,1-4H3,(H,27,28,29)" A1IR8 InChIKey InChI 1.06 HEAICLUQPDPZTR-UHFFFAOYSA-N A1IR8 SMILES_CANONICAL CACTVS 3.385 "CCC1=CC(=O)N(c2ccccc2)c3nc(Nc4ccc(cc4)N(C)CCN(C)C)ncc13" A1IR8 SMILES CACTVS 3.385 "CCC1=CC(=O)N(c2ccccc2)c3nc(Nc4ccc(cc4)N(C)CCN(C)C)ncc13" A1IR8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC1=CC(=O)N(c2c1cnc(n2)Nc3ccc(cc3)N(C)CCN(C)C)c4ccccc4" A1IR8 SMILES "OpenEye OEToolkits" 2.0.7 "CCC1=CC(=O)N(c2c1cnc(n2)Nc3ccc(cc3)N(C)CCN(C)C)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id A1IR8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[4-[2-(dimethylamino)ethyl-methyl-amino]phenyl]amino]-5-ethyl-8-phenyl-pyrido[2,3-d]pyrimidin-7-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IR8 "Create component" 2024-10-23 PDBE A1IR8 "Initial release" 2026-01-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IR8 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #