data_A1IRB # _chem_comp.id A1IRB _chem_comp.name "cis-5-dodecenoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H22 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(~{E})-dodec-5-enoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-04 _chem_comp.pdbx_modified_date 2025-10-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 198.302 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IRB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GZ5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IRB C1 C1 C 0 1 N N N N N N -16.252 -0.930 -21.255 -5.032 -0.919 -0.002 C1 A1IRB 1 A1IRB C2 C2 C 0 1 N N N N N N -15.221 -0.697 -22.353 -4.261 0.306 -0.420 C2 A1IRB 2 A1IRB C3 C3 C 0 1 N N N N N N -13.892 -0.082 -21.884 -2.874 0.280 0.224 C3 A1IRB 3 A1IRB C4 C4 C 0 1 N N N N N N -13.149 0.880 -22.752 -2.091 1.524 -0.201 C4 A1IRB 4 A1IRB C5 C5 C 0 1 N N N N N N -13.042 0.877 -24.038 -0.724 1.498 0.433 C5 A1IRB 5 A1IRB C6 C6 C 0 1 N N N N N N -12.429 2.048 -24.745 0.347 1.591 -0.315 C6 A1IRB 6 A1IRB C7 C7 C 0 1 N N N N N N -12.638 1.969 -26.214 1.714 1.566 0.319 C7 A1IRB 7 A1IRB O1 O1 O 0 1 N N N N N N -15.894 -1.422 -20.173 -6.284 -1.109 -0.448 O1 A1IRB 8 A1IRB C8 C8 C 0 1 N N N N N N -12.094 3.158 -26.988 2.552 0.457 -0.321 C8 A1IRB 9 A1IRB C9 C9 C 0 1 N N N N N N -12.481 3.154 -28.453 3.940 0.430 0.323 C9 A1IRB 10 A1IRB C10 C10 C 0 1 N N N N N N -11.416 3.687 -29.363 4.778 -0.678 -0.316 C10 A1IRB 11 A1IRB C11 C11 C 0 1 N N N N N N -11.514 5.116 -29.838 6.166 -0.705 0.327 C11 A1IRB 12 A1IRB C12 C12 C 0 1 N N N N N N -11.075 6.092 -28.784 7.003 -1.814 -0.312 C12 A1IRB 13 A1IRB O2 O2 O 0 1 N N N N N N -17.444 -0.678 -21.485 -4.523 -1.733 0.732 O2 A1IRB 14 A1IRB H1 H1 H 0 1 N N N N N N -15.665 -0.020 -23.098 -4.158 0.318 -1.505 H1 A1IRB 15 A1IRB H2 H2 H 0 1 N N N N N N -15.000 -1.666 -22.823 -4.795 1.200 -0.096 H2 A1IRB 16 A1IRB H3 H3 H 0 1 N N N N N N -13.209 -0.922 -21.689 -2.977 0.269 1.309 H3 A1IRB 17 A1IRB H4 H4 H 0 1 N N N N N N -14.104 0.444 -20.942 -2.340 -0.613 -0.100 H4 A1IRB 18 A1IRB H5 H5 H 0 1 N N N N N N -12.112 0.838 -22.387 -1.988 1.535 -1.286 H5 A1IRB 19 A1IRB H6 H6 H 0 1 N N N N N N -13.395 0.029 -24.606 -0.627 1.403 1.505 H6 A1IRB 20 A1IRB H7 H7 H 0 1 N N N N N N -11.901 2.849 -24.249 0.251 1.687 -1.387 H7 A1IRB 21 A1IRB H9 H9 H 0 1 N N N N N N -13.719 1.899 -26.405 2.204 2.527 0.164 H9 A1IRB 22 A1IRB H10 H10 H 0 1 N N N N N N -12.141 1.060 -26.584 1.615 1.376 1.388 H10 A1IRB 23 A1IRB H11 H11 H 0 1 N N N N N N -16.653 -1.550 -19.616 -6.739 -1.910 -0.152 H11 A1IRB 24 A1IRB H12 H12 H 0 1 N N N N N N -10.996 3.146 -26.918 2.062 -0.504 -0.166 H12 A1IRB 25 A1IRB H13 H13 H 0 1 N N N N N N -12.481 4.079 -26.528 2.651 0.646 -1.389 H13 A1IRB 26 A1IRB H14 H14 H 0 1 N N N N N N -13.382 3.773 -28.575 4.430 1.391 0.169 H14 A1IRB 27 A1IRB H15 H15 H 0 1 N N N N N N -12.704 2.118 -28.750 3.841 0.241 1.392 H15 A1IRB 28 A1IRB H16 H16 H 0 1 N N N N N N -11.407 3.049 -30.259 4.287 -1.640 -0.162 H16 A1IRB 29 A1IRB H17 H17 H 0 1 N N N N N N -10.458 3.588 -28.832 4.877 -0.489 -1.385 H17 A1IRB 30 A1IRB H18 H18 H 0 1 N N N N N N -10.875 5.240 -30.725 6.656 0.256 0.173 H18 A1IRB 31 A1IRB H19 H19 H 0 1 N N N N N N -12.559 5.330 -30.107 6.067 -0.895 1.396 H19 A1IRB 32 A1IRB H20 H20 H 0 1 N N N N N N -11.163 7.117 -29.173 6.513 -2.775 -0.158 H20 A1IRB 33 A1IRB H21 H21 H 0 1 N N N N N N -11.712 5.982 -27.894 7.102 -1.624 -1.381 H21 A1IRB 34 A1IRB H22 H22 H 0 1 N N N N N N -10.028 5.892 -28.512 7.992 -1.832 0.147 H22 A1IRB 35 A1IRB H23 H23 H 0 1 N N N N N N -13.583 1.862 -22.512 -2.625 2.417 0.123 H23 A1IRB 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IRB C11 C10 SING N N 1 A1IRB C11 C12 SING N N 2 A1IRB C10 C9 SING N N 3 A1IRB C9 C8 SING N N 4 A1IRB C8 C7 SING N N 5 A1IRB C7 C6 SING N N 6 A1IRB C6 C5 DOUB N E 7 A1IRB C5 C4 SING N N 8 A1IRB C4 C3 SING N N 9 A1IRB C2 C3 SING N N 10 A1IRB C2 C1 SING N N 11 A1IRB O2 C1 DOUB N N 12 A1IRB C1 O1 SING N N 13 A1IRB C2 H1 SING N N 14 A1IRB C2 H2 SING N N 15 A1IRB C3 H3 SING N N 16 A1IRB C3 H4 SING N N 17 A1IRB C4 H5 SING N N 18 A1IRB C5 H6 SING N N 19 A1IRB C6 H7 SING N N 20 A1IRB C7 H9 SING N N 21 A1IRB C7 H10 SING N N 22 A1IRB O1 H11 SING N N 23 A1IRB C8 H12 SING N N 24 A1IRB C8 H13 SING N N 25 A1IRB C9 H14 SING N N 26 A1IRB C9 H15 SING N N 27 A1IRB C10 H16 SING N N 28 A1IRB C10 H17 SING N N 29 A1IRB C11 H18 SING N N 30 A1IRB C11 H19 SING N N 31 A1IRB C12 H20 SING N N 32 A1IRB C12 H21 SING N N 33 A1IRB C12 H22 SING N N 34 A1IRB C4 H23 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IRB InChI InChI 1.06 "InChI=1S/C12H22O2/c1-2-3-4-5-6-7-8-9-10-11-12(13)14/h7-8H,2-6,9-11H2,1H3,(H,13,14)/b8-7+" A1IRB InChIKey InChI 1.06 IJBFSOLHRKELLR-BQYQJAHWSA-N A1IRB SMILES_CANONICAL CACTVS 3.385 "CCCCCC\C=C\CCCC(O)=O" A1IRB SMILES CACTVS 3.385 "CCCCCCC=CCCCC(O)=O" A1IRB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC/C=C/CCCC(=O)O" A1IRB SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCC=CCCCC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1IRB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{E})-dodec-5-enoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IRB _pdbx_chem_comp_synonyms.name "(~{E})-dodec-5-enoic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IRB "Create component" 2024-10-04 PDBE A1IRB "Initial release" 2025-10-15 RCSB #