data_A1IRO # _chem_comp.id A1IRO _chem_comp.name "2-cyano-~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-09 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.218 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IRO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9H0T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IRO C1 C1 C 0 1 N N S N N N -13.958 26.143 -8.170 -0.063 0.051 -0.117 C1 A1IRO 1 A1IRO C2 C2 C 0 1 N N S N N N -12.638 26.894 -8.127 -1.063 1.168 0.193 C2 A1IRO 2 A1IRO C3 C3 C 0 1 N N R N N N -11.893 26.441 -6.876 -2.349 0.927 -0.604 C3 A1IRO 3 A1IRO C4 C4 C 0 1 N N S N N N -11.722 24.918 -6.870 -2.900 -0.459 -0.257 C4 A1IRO 4 A1IRO C5 C5 C 0 1 N N S N N N -13.096 24.266 -7.009 -1.829 -1.513 -0.550 C5 A1IRO 5 A1IRO C6 C6 C 0 1 N N N N N N -13.018 22.762 -7.119 -2.350 -2.895 -0.149 C6 A1IRO 6 A1IRO O1 O1 O 0 1 N N N N N N -13.704 24.743 -8.233 -0.650 -1.213 0.200 O1 A1IRO 7 A1IRO O2 O2 O 0 1 N N N N N N -10.857 24.514 -7.954 -3.246 -0.502 1.129 O2 A1IRO 8 A1IRO O3 O3 O 0 1 N N N N N N -10.601 27.104 -6.806 -3.315 1.924 -0.265 O3 A1IRO 9 A1IRO O4 O4 O 0 1 N N N N N N -12.856 28.290 -8.029 -0.501 2.429 -0.176 O4 A1IRO 10 A1IRO N1 N1 N 0 1 N N N N N N -14.702 26.497 -9.331 1.147 0.243 0.686 N1 A1IRO 11 A1IRO C7 C7 C 0 1 N N N N N N -16.004 26.708 -9.340 2.359 0.016 0.142 C7 A1IRO 12 A1IRO O5 O5 O 0 1 N N N N N N -16.627 26.597 -8.296 2.448 -0.347 -1.012 O5 A1IRO 13 A1IRO C8 C8 C 0 1 N N N N N N -16.571 27.201 -10.649 3.605 0.213 0.968 C8 A1IRO 14 A1IRO C9 C9 C 0 1 N N N N N N -18.009 27.339 -10.583 4.789 -0.098 0.151 C9 A1IRO 15 A1IRO N2 N2 N 0 1 N N N N N N -19.159 27.411 -10.486 5.703 -0.338 -0.479 N2 A1IRO 16 A1IRO H1 H1 H 0 1 N N N N N N -14.533 26.383 -7.264 0.195 0.078 -1.175 H1 A1IRO 17 A1IRO H2 H2 H 0 1 N N N N N N -12.043 26.647 -9.019 -1.291 1.168 1.259 H2 A1IRO 18 A1IRO H3 H3 H 0 1 N N N N N N -12.492 26.722 -5.997 -2.131 0.976 -1.671 H3 A1IRO 19 A1IRO H4 H4 H 0 1 N N N N N N -11.282 24.616 -5.908 -3.784 -0.661 -0.861 H4 A1IRO 20 A1IRO H5 H5 H 0 1 N N N N N N -13.716 24.539 -6.142 -1.594 -1.508 -1.614 H5 A1IRO 21 A1IRO H7 H6 H 0 1 N N N N N N -14.032 22.348 -7.216 -3.250 -3.123 -0.720 H7 A1IRO 22 A1IRO H8 H7 H 0 1 N N N N N N -12.424 22.490 -8.004 -1.587 -3.645 -0.358 H8 A1IRO 23 A1IRO H6 H8 H 0 1 N N N N N N -12.540 22.353 -6.217 -2.584 -2.901 0.915 H6 A1IRO 24 A1IRO H9 H9 H 0 1 N N N N N N -10.756 23.569 -7.944 -3.603 -1.353 1.418 H9 A1IRO 25 A1IRO H10 H10 H 0 1 N N N N N N -10.140 26.819 -6.026 -3.029 2.829 -0.452 H10 A1IRO 26 A1IRO H11 H11 H 0 1 N N N N N N -12.020 28.740 -8.004 0.319 2.644 0.287 H11 A1IRO 27 A1IRO H12 H12 H 0 1 N N N N N N -14.206 26.592 -10.194 1.077 0.533 1.609 H12 A1IRO 28 A1IRO H13 H13 H 0 1 N N N N N N -16.128 28.180 -10.885 3.657 1.248 1.305 H13 A1IRO 29 A1IRO H14 H14 H 0 1 N N N N N N -16.317 26.483 -11.442 3.576 -0.450 1.833 H14 A1IRO 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IRO C1 C2 SING N N 1 A1IRO C2 C3 SING N N 2 A1IRO C3 C4 SING N N 3 A1IRO C4 C5 SING N N 4 A1IRO C5 C6 SING N N 5 A1IRO C5 O1 SING N N 6 A1IRO C4 O2 SING N N 7 A1IRO C3 O3 SING N N 8 A1IRO C2 O4 SING N N 9 A1IRO C1 N1 SING N N 10 A1IRO N1 C7 SING N N 11 A1IRO C7 O5 DOUB N N 12 A1IRO C7 C8 SING N N 13 A1IRO C8 C9 SING N N 14 A1IRO C9 N2 TRIP N N 15 A1IRO C1 O1 SING N N 16 A1IRO C1 H1 SING N N 17 A1IRO C2 H2 SING N N 18 A1IRO C3 H3 SING N N 19 A1IRO C4 H4 SING N N 20 A1IRO C5 H5 SING N N 21 A1IRO C6 H7 SING N N 22 A1IRO C6 H8 SING N N 23 A1IRO C6 H6 SING N N 24 A1IRO O2 H9 SING N N 25 A1IRO O3 H10 SING N N 26 A1IRO O4 H11 SING N N 27 A1IRO N1 H12 SING N N 28 A1IRO C8 H13 SING N N 29 A1IRO C8 H14 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IRO InChI InChI 1.06 "InChI=1S/C9H14N2O5/c1-4-6(13)7(14)8(15)9(16-4)11-5(12)2-3-10/h4,6-9,13-15H,2H2,1H3,(H,11,12)/t4-,6+,7+,8-,9-/m0/s1" A1IRO InChIKey InChI 1.06 RWJVLIIOWAOZCY-VDTAYCBBSA-N A1IRO SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@H](NC(=O)CC#N)[C@@H](O)[C@H](O)[C@@H]1O" A1IRO SMILES CACTVS 3.385 "C[CH]1O[CH](NC(=O)CC#N)[CH](O)[CH](O)[CH]1O" A1IRO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)NC(=O)CC#N)O)O)O" A1IRO SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)NC(=O)CC#N)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1IRO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-cyano-~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IRO "Create component" 2024-10-09 PDBE A1IRO "Initial release" 2026-04-22 RCSB #