data_A1IRP # _chem_comp.id A1IRP _chem_comp.name "(2~{S})-~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]-1-propanoyl-pyrrolidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H24 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-09 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 316.350 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9H0U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IRP O8 O1 O 0 1 N N N N N N 131.377 19.991 8.023 -3.072 -1.796 -0.354 O8 A1IRP 1 A1IRP C12 C1 C 0 1 N N N N N N 130.524 19.174 8.061 -3.773 -0.856 -0.043 C12 A1IRP 2 A1IRP C13 C2 C 0 1 N N N N N N 129.072 19.551 8.291 -5.084 -1.094 0.661 C13 A1IRP 3 A1IRP C14 C3 C 0 1 N N N N N N 128.852 21.028 8.421 -5.289 -2.597 0.863 C14 A1IRP 4 A1IRP N2 N1 N 0 1 N N N N N N 130.825 17.880 7.859 -3.377 0.401 -0.323 N2 A1IRP 5 A1IRP C11 C4 C 0 1 N N N N N N 129.842 16.797 7.948 -4.124 1.630 0.002 C11 A1IRP 6 A1IRP C10 C5 C 0 1 N N N N N N 130.507 15.490 7.587 -3.048 2.743 0.065 C10 A1IRP 7 A1IRP C9 C6 C 0 1 N N N N N N 131.974 15.811 7.374 -2.091 2.316 -1.078 C9 A1IRP 8 A1IRP C8 C7 C 0 1 N N S N N N 132.178 17.345 7.535 -2.126 0.775 -0.998 C8 A1IRP 9 A1IRP C7 C8 C 0 1 N N N N N N 132.729 18.126 6.336 -0.946 0.274 -0.206 C7 A1IRP 10 A1IRP O7 O2 O 0 1 N N N N N N 133.954 18.421 6.337 -1.125 -0.339 0.826 O7 A1IRP 11 A1IRP N1 N2 N 0 1 N N N N N N 131.850 18.459 5.375 0.307 0.506 -0.643 N1 A1IRP 12 A1IRP C1 C9 C 0 1 N N S N N N 132.132 19.283 4.335 1.454 0.018 0.128 C1 A1IRP 13 A1IRP O5 O3 O 0 1 N N N N N N 131.641 18.715 3.112 1.947 -1.187 -0.462 O5 A1IRP 14 A1IRP C5 C10 C 0 1 N N S N N N 131.836 19.547 1.971 3.055 -1.764 0.231 C5 A1IRP 15 A1IRP C6 C11 C 0 1 N N N N N N 131.305 18.916 0.706 3.477 -3.057 -0.470 C6 A1IRP 16 A1IRP C4 C12 C 0 1 N N S N N N 131.128 20.855 2.141 4.226 -0.778 0.229 C4 A1IRP 17 A1IRP O4 O4 O 0 1 N N N N N N 129.710 20.777 2.174 4.639 -0.529 -1.116 O4 A1IRP 18 A1IRP C3 C13 C 0 1 N N R N N N 131.695 21.528 3.438 3.777 0.535 0.878 C3 A1IRP 19 A1IRP O3 O5 O 0 1 N N N N N N 131.139 22.805 3.580 4.841 1.488 0.815 O3 A1IRP 20 A1IRP C2 C14 C 0 1 N N S N N N 131.407 20.640 4.586 2.560 1.076 0.122 C2 A1IRP 21 A1IRP O2 O6 O 0 1 N N N N N N 131.936 21.283 5.779 2.089 2.263 0.763 O2 A1IRP 22 A1IRP H21 H1 H 0 1 N N N N N N 128.478 19.184 7.441 -5.070 -0.596 1.631 H21 A1IRP 23 A1IRP H20 H2 H 0 1 N N N N N N 128.728 19.065 9.216 -5.898 -0.693 0.058 H20 A1IRP 24 A1IRP H22 H3 H 0 1 N Y N N N N 127.783 21.227 8.585 -6.237 -2.769 1.372 H22 A1IRP 25 A1IRP H23 H4 H 0 1 N N N N N N 129.431 21.411 9.274 -5.302 -3.095 -0.107 H23 A1IRP 26 A1IRP H24 H5 H 0 1 N N N N N N 129.181 21.530 7.499 -4.474 -2.997 1.466 H24 A1IRP 27 A1IRP H18 H6 H 0 1 N N N N N N 129.451 16.739 8.974 -4.852 1.849 -0.779 H18 A1IRP 28 A1IRP H19 H7 H 0 1 N N N N N N 129.014 16.993 7.250 -4.621 1.527 0.967 H19 A1IRP 29 A1IRP H16 H8 H 0 1 N N N N N N 130.390 14.763 8.404 -3.486 3.721 -0.136 H16 A1IRP 30 A1IRP H17 H9 H 0 1 N N N N N N 130.068 15.080 6.666 -2.536 2.736 1.027 H17 A1IRP 31 A1IRP H15 H10 H 0 1 N N N N N N 132.278 15.501 6.363 -2.462 2.664 -2.042 H15 A1IRP 32 A1IRP H14 H11 H 0 1 N N N N N N 132.582 15.277 8.119 -1.082 2.686 -0.895 H14 A1IRP 33 A1IRP H13 H12 H 0 1 N N N N N N 132.844 17.513 8.394 -2.106 0.353 -2.003 H13 A1IRP 34 A1IRP HN1 H13 H 0 0 N N N N N N 130.929 18.074 5.430 0.450 0.995 -1.468 NH1 A1IRP 35 A1IRP H1 H14 H 0 1 N N N N N N 133.212 19.474 4.257 1.145 -0.179 1.154 H1 A1IRP 36 A1IRP H5 H15 H 0 1 N N N N N N 132.910 19.744 1.837 2.767 -1.985 1.258 H5 A1IRP 37 A1IRP H61 H16 H 0 1 N N N N N N 131.801 17.948 0.542 3.766 -2.836 -1.497 H61 A1IRP 38 A1IRP H63 H17 H 0 1 N N N N N N 130.220 18.760 0.801 4.323 -3.498 0.058 H63 A1IRP 39 A1IRP H62 H18 H 0 1 N N N N N N 131.507 19.580 -0.147 2.644 -3.760 -0.470 H62 A1IRP 40 A1IRP H4 H19 H 0 1 N N N N N N 131.420 21.499 1.299 5.057 -1.198 0.795 H4 A1IRP 41 A1IRP HO4 H20 H 0 0 N N N N N N 129.396 20.366 1.377 4.932 -1.319 -1.590 OH4 A1IRP 42 A1IRP H3 H21 H 0 1 N N N N N N 132.786 21.608 3.321 3.509 0.355 1.919 H3 A1IRP 43 A1IRP HO3 H22 H 0 0 N N N N N N 131.354 23.331 2.819 4.626 2.344 1.209 OH3 A1IRP 44 A1IRP H2 H23 H 0 1 N N N N N N 130.325 20.467 4.679 2.842 1.304 -0.906 H2 A1IRP 45 A1IRP HO2 H24 H 0 0 N N N N N N 131.702 20.772 6.545 1.314 2.658 0.339 OH2 A1IRP 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IRP C1 C2 SING N N 1 A1IRP C1 O5 SING N N 2 A1IRP N1 C1 SING N N 3 A1IRP C3 C2 SING N N 4 A1IRP C2 O2 SING N N 5 A1IRP C4 C3 SING N N 6 A1IRP C3 O3 SING N N 7 A1IRP C5 C4 SING N N 8 A1IRP C4 O4 SING N N 9 A1IRP C5 C6 SING N N 10 A1IRP O5 C5 SING N N 11 A1IRP C7 N1 SING N N 12 A1IRP C7 O7 DOUB N N 13 A1IRP C8 C7 SING N N 14 A1IRP N2 C8 SING N N 15 A1IRP C9 C8 SING N N 16 A1IRP N2 C11 SING N N 17 A1IRP C12 N2 SING N N 18 A1IRP C11 C10 SING N N 19 A1IRP C10 C9 SING N N 20 A1IRP O8 C12 DOUB N N 21 A1IRP C12 C13 SING N N 22 A1IRP C13 C14 SING N N 23 A1IRP C13 H21 SING N N 24 A1IRP C13 H20 SING N N 25 A1IRP C14 H22 SING N N 26 A1IRP C14 H23 SING N N 27 A1IRP C14 H24 SING N N 28 A1IRP C11 H18 SING N N 29 A1IRP C11 H19 SING N N 30 A1IRP C10 H16 SING N N 31 A1IRP C10 H17 SING N N 32 A1IRP C9 H15 SING N N 33 A1IRP C9 H14 SING N N 34 A1IRP C8 H13 SING N N 35 A1IRP N1 HN1 SING N N 36 A1IRP C1 H1 SING N N 37 A1IRP C5 H5 SING N N 38 A1IRP C6 H61 SING N N 39 A1IRP C6 H63 SING N N 40 A1IRP C6 H62 SING N N 41 A1IRP C4 H4 SING N N 42 A1IRP O4 HO4 SING N N 43 A1IRP C3 H3 SING N N 44 A1IRP O3 HO3 SING N N 45 A1IRP C2 H2 SING N N 46 A1IRP O2 HO2 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IRP InChI InChI 1.06 "InChI=1S/C14H24N2O6/c1-3-9(17)16-6-4-5-8(16)13(21)15-14-12(20)11(19)10(18)7(2)22-14/h7-8,10-12,14,18-20H,3-6H2,1-2H3,(H,15,21)" A1IRP InChIKey InChI 1.06 SRCFLMGFRZHCRX-UHFFFAOYSA-N A1IRP SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CCC[C@H]1C(=O)N[C@H]2O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]2O" A1IRP SMILES CACTVS 3.385 "CCC(=O)N1CCC[CH]1C(=O)N[CH]2O[CH](C)[CH](O)[CH](O)[CH]2O" A1IRP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCC[C@H]1C(=O)N[C@@H]2[C@H]([C@@H]([C@@H]([C@@H](O2)C)O)O)O" A1IRP SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCCC1C(=O)NC2C(C(C(C(O2)C)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1IRP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]-1-propanoyl-pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IRP "Create component" 2024-10-09 PDBE A1IRP "Initial release" 2026-04-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IRP _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #