data_A1IS9 # _chem_comp.id A1IS9 _chem_comp.name Sonepiprazole _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-[4-[2-[(1S})-3,4-dihydro-1H-isochromen-1-yl]ethyl]piperazin-1-yl]benzenesulfonamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-29 _chem_comp.pdbx_modified_date 2025-08-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.522 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IS9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9H81 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IS9 C4 C1 C 0 1 Y N N N N N -24.614 38.565 48.237 -5.543 1.669 1.079 C4 A1IS9 1 A1IS9 C2 C2 C 0 1 N N S N N N -23.199 36.478 48.193 -4.941 -0.657 0.427 C2 A1IS9 2 A1IS9 N1 N1 N 0 1 N N N N N N -18.821 36.501 45.160 1.559 -1.079 -0.140 N1 A1IS9 3 A1IS9 C6 C3 C 0 1 Y N N N N N -26.183 38.995 49.986 -7.443 2.800 0.169 C6 A1IS9 4 A1IS9 C5 C4 C 0 1 Y N N N N N -25.536 39.403 48.842 -6.342 2.792 1.005 C5 A1IS9 5 A1IS9 C8 C5 C 0 1 Y N N N N N -24.989 36.888 49.930 -6.928 0.562 -0.526 C8 A1IS9 6 A1IS9 O2 O1 O 0 1 N N N N N N -16.220 35.816 39.158 7.671 0.566 -1.494 O2 A1IS9 7 A1IS9 S S1 S 0 1 N N N N N N -16.468 34.665 39.961 7.222 0.667 -0.149 S A1IS9 8 A1IS9 O1 O2 O 0 1 N N N N N N -17.272 33.599 39.427 7.851 -0.006 0.932 O1 A1IS9 9 A1IS9 N2 N2 N 0 1 N N N N N N -15.040 34.018 40.365 7.238 2.279 0.230 N2 A1IS9 10 A1IS9 C18 C6 C 0 1 Y N N N N N -17.242 35.203 41.458 5.538 0.147 -0.147 C18 A1IS9 11 A1IS9 C17 C7 C 0 1 Y N N N N N -17.271 34.339 42.541 4.793 0.218 -1.309 C17 A1IS9 12 A1IS9 C16 C8 C 0 1 Y N N N N N -17.830 34.759 43.735 3.472 -0.188 -1.310 C16 A1IS9 13 A1IS9 C19 C9 C 0 1 Y N N N N N -17.793 36.475 41.553 4.967 -0.336 1.016 C19 A1IS9 14 A1IS9 C20 C10 C 0 1 Y N N N N N -18.347 36.890 42.756 3.648 -0.743 1.022 C20 A1IS9 15 A1IS9 C15 C11 C 0 1 Y N N N N N -18.355 36.043 43.873 2.894 -0.668 -0.142 C15 A1IS9 16 A1IS9 C12 C12 C 0 1 N N N N N N -19.544 37.765 45.264 1.155 -1.548 1.193 C12 A1IS9 17 A1IS9 C11 C13 C 0 1 N N N N N N -20.955 37.565 44.793 -0.286 -2.062 1.135 C11 A1IS9 18 A1IS9 C13 C14 C 0 1 N N N N N N -19.331 35.554 46.158 0.675 -0.001 -0.606 C13 A1IS9 19 A1IS9 C14 C15 C 0 1 N N N N N N -20.749 35.912 46.568 -0.765 -0.515 -0.664 C14 A1IS9 20 A1IS9 N N3 N 0 1 N N N N N N -21.546 36.353 45.392 -1.169 -0.984 0.669 N A1IS9 21 A1IS9 C10 C16 C 0 1 N N N N N N -22.968 36.602 45.672 -2.573 -1.416 0.671 C10 A1IS9 22 A1IS9 C9 C17 C 0 1 N N N N N N -23.526 35.823 46.853 -3.479 -0.207 0.424 C9 A1IS9 23 A1IS9 O O3 O 0 1 N N N N N N -22.763 35.435 49.080 -5.166 -1.542 -0.670 O A1IS9 24 A1IS9 C1 C18 C 0 1 N N N N N N -23.880 34.694 49.600 -6.547 -1.871 -0.854 C1 A1IS9 25 A1IS9 C3 C19 C 0 1 Y N N N N N -24.318 37.311 48.777 -5.835 0.550 0.314 C3 A1IS9 26 A1IS9 C C20 C 0 1 N N N N N N -24.666 35.553 50.560 -7.275 -0.632 -1.379 C A1IS9 27 A1IS9 C7 C21 C 0 1 Y N N N N N -25.919 37.743 50.524 -7.738 1.685 -0.590 C7 A1IS9 28 A1IS9 H5 H1 H 0 1 N N N N N N -24.116 38.886 47.334 -4.683 1.663 1.733 H5 A1IS9 29 A1IS9 H4 H2 H 0 1 N N N N N N -22.349 37.154 48.020 -5.156 -1.180 1.359 H4 A1IS9 30 A1IS9 H7 H3 H 0 1 N N N N N N -26.896 39.649 50.465 -8.076 3.674 0.116 H7 A1IS9 31 A1IS9 H6 H4 H 0 1 N N N N N N -25.746 40.373 48.417 -6.108 3.663 1.599 H6 A1IS9 32 A1IS9 H25 H5 H 0 1 N N N N N N -14.572 33.701 39.540 6.405 2.745 0.401 H25 A1IS9 33 A1IS9 H26 H6 H 0 1 N N N N N N -14.479 34.708 40.823 8.080 2.757 0.280 H26 A1IS9 34 A1IS9 H22 H7 H 0 1 N N N N N N -16.860 33.344 42.454 5.243 0.592 -2.217 H22 A1IS9 35 A1IS9 H21 H8 H 0 1 N N N N N N -17.860 34.080 44.575 2.890 -0.131 -2.218 H21 A1IS9 36 A1IS9 H23 H9 H 0 1 N N N N N N -17.790 37.135 40.698 5.554 -0.395 1.921 H23 A1IS9 37 A1IS9 H24 H10 H 0 1 N N N N N N -18.777 37.878 42.832 3.202 -1.120 1.931 H24 A1IS9 38 A1IS9 H16 H11 H 0 1 N N N N N N -19.051 38.524 44.638 1.816 -2.354 1.510 H16 A1IS9 39 A1IS9 H15 H12 H 0 1 N N N N N N -19.550 38.101 46.311 1.219 -0.724 1.903 H15 A1IS9 40 A1IS9 H14 H13 H 0 1 N N N N N N -20.957 37.463 43.698 -0.344 -2.903 0.444 H14 A1IS9 41 A1IS9 H13 H14 H 0 1 N N N N N N -21.558 38.439 45.081 -0.597 -2.384 2.128 H13 A1IS9 42 A1IS9 H18 H15 H 0 1 N N N N N N -19.325 34.541 45.730 0.734 0.841 0.084 H18 A1IS9 43 A1IS9 H17 H16 H 0 1 N N N N N N -18.682 35.581 47.045 0.988 0.321 -1.599 H17 A1IS9 44 A1IS9 H20 H17 H 0 1 N N N N N N -21.228 35.029 47.017 -1.426 0.292 -0.982 H20 A1IS9 45 A1IS9 H19 H18 H 0 1 N N N N N N -20.716 36.727 47.306 -0.829 -1.338 -1.375 H19 A1IS9 46 A1IS9 H12 H20 H 0 1 N N N N N N -23.547 36.330 44.777 -2.728 -2.153 -0.117 H12 A1IS9 47 A1IS9 H11 H21 H 0 1 N N N N N N -23.094 37.675 45.878 -2.815 -1.860 1.637 H11 A1IS9 48 A1IS9 H10 H22 H 0 1 N N N N N N -23.097 34.810 46.842 -3.237 0.236 -0.542 H10 A1IS9 49 A1IS9 H9 H23 H 0 1 N N N N N N -24.619 35.760 46.749 -3.324 0.530 1.212 H9 A1IS9 50 A1IS9 H2 H24 H 0 1 N N N N N N -23.512 33.802 50.127 -6.638 -2.682 -1.577 H2 A1IS9 51 A1IS9 H3 H25 H 0 1 N N N N N N -24.532 34.386 48.769 -6.981 -2.178 0.098 H3 A1IS9 52 A1IS9 H1 H26 H 0 1 N N N N N N -25.603 35.040 50.822 -8.351 -0.802 -1.344 H1 A1IS9 53 A1IS9 H H27 H 0 1 N N N N N N -24.071 35.717 51.471 -6.972 -0.442 -2.408 H A1IS9 54 A1IS9 H8 H28 H 0 1 N N N N N N -26.441 37.426 51.415 -8.603 1.688 -1.237 H8 A1IS9 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IS9 C C1 SING N N 1 A1IS9 C1 O SING N N 2 A1IS9 O C2 SING N N 3 A1IS9 C3 C2 SING N N 4 A1IS9 C3 C4 SING Y N 5 A1IS9 C4 C5 DOUB Y N 6 A1IS9 C5 C6 SING Y N 7 A1IS9 C6 C7 DOUB Y N 8 A1IS9 C7 C8 SING Y N 9 A1IS9 C8 C3 DOUB Y N 10 A1IS9 C C8 SING N N 11 A1IS9 C2 C9 SING N N 12 A1IS9 C9 C10 SING N N 13 A1IS9 C10 N SING N N 14 A1IS9 N C11 SING N N 15 A1IS9 C11 C12 SING N N 16 A1IS9 C12 N1 SING N N 17 A1IS9 C13 N1 SING N N 18 A1IS9 C14 C13 SING N N 19 A1IS9 N C14 SING N N 20 A1IS9 N1 C15 SING N N 21 A1IS9 C15 C16 DOUB Y N 22 A1IS9 C16 C17 SING Y N 23 A1IS9 C17 C18 DOUB Y N 24 A1IS9 C19 C18 SING Y N 25 A1IS9 C20 C19 DOUB Y N 26 A1IS9 C15 C20 SING Y N 27 A1IS9 C18 S SING N N 28 A1IS9 O1 S DOUB N N 29 A1IS9 S O2 DOUB N N 30 A1IS9 N2 S SING N N 31 A1IS9 C4 H5 SING N N 32 A1IS9 C2 H4 SING N N 33 A1IS9 C6 H7 SING N N 34 A1IS9 C5 H6 SING N N 35 A1IS9 N2 H25 SING N N 36 A1IS9 N2 H26 SING N N 37 A1IS9 C17 H22 SING N N 38 A1IS9 C16 H21 SING N N 39 A1IS9 C19 H23 SING N N 40 A1IS9 C20 H24 SING N N 41 A1IS9 C12 H16 SING N N 42 A1IS9 C12 H15 SING N N 43 A1IS9 C11 H14 SING N N 44 A1IS9 C11 H13 SING N N 45 A1IS9 C13 H18 SING N N 46 A1IS9 C13 H17 SING N N 47 A1IS9 C14 H20 SING N N 48 A1IS9 C14 H19 SING N N 49 A1IS9 C10 H12 SING N N 50 A1IS9 C10 H11 SING N N 51 A1IS9 C9 H10 SING N N 52 A1IS9 C9 H9 SING N N 53 A1IS9 C1 H2 SING N N 54 A1IS9 C1 H3 SING N N 55 A1IS9 C H1 SING N N 56 A1IS9 C H SING N N 57 A1IS9 C7 H8 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IS9 InChI InChI 1.06 "InChI=1S/C21H27N3O3S/c22-28(25,26)19-7-5-18(6-8-19)24-14-12-23(13-15-24)11-9-21-20-4-2-1-3-17(20)10-16-27-21/h1-8,21H,9-16H2,(H2,22,25,26)/t21-/m0/s1" A1IS9 InChIKey InChI 1.06 WNUQCGWXPNGORO-NRFANRHFSA-N A1IS9 SMILES_CANONICAL CACTVS 3.385 "N[S](=O)(=O)c1ccc(cc1)N2CCN(CC[C@@H]3OCCc4ccccc34)CC2" A1IS9 SMILES CACTVS 3.385 "N[S](=O)(=O)c1ccc(cc1)N2CCN(CC[CH]3OCCc4ccccc34)CC2" A1IS9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CCO[C@H]2CCN3CCN(CC3)c4ccc(cc4)S(=O)(=O)N" A1IS9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CCOC2CCN3CCN(CC3)c4ccc(cc4)S(=O)(=O)N" # _pdbx_chem_comp_identifier.comp_id A1IS9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[4-[2-[(1~{S})-3,4-dihydro-1~{H}-isochromen-1-yl]ethyl]piperazin-1-yl]benzenesulfonamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IS9 _pdbx_chem_comp_synonyms.name "4-[4-[2-[(1S})-3,4-dihydro-1H-isochromen-1-yl]ethyl]piperazin-1-yl]benzenesulfonamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IS9 "Create component" 2024-10-29 PDBE A1IS9 "Modify name" 2025-02-26 PDBE A1IS9 "Initial release" 2025-09-03 RCSB #