data_A1ISH # _chem_comp.id A1ISH _chem_comp.name "(E)-N-[(1S)-1-[4,4-bis(fluoranyl)cyclohexyl]-2-oxidanylidene-2-[[5-[(2-oxidanylidene-3H-benzimidazol-1-yl)methyl]-1,3-thiazol-2-yl]amino]ethyl]-3-cyclopropyl-2-fluoranyl-prop-2-enamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 F3 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-23 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 533.566 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ISH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9H4D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ISH C1 C1 C 0 1 N N N N N N -12.005 -15.023 -18.729 -2.913 -1.720 -1.102 C1 A1ISH 1 A1ISH C2 C2 C 0 1 N N N N N N -11.381 -15.148 -20.140 -3.577 -3.094 -1.201 C2 A1ISH 2 A1ISH C3 C3 C 0 1 N N N N N N -11.093 -13.730 -20.699 -4.985 -3.025 -0.605 C3 A1ISH 3 A1ISH C14 C4 C 0 1 Y N N N N N -16.542 -11.262 -17.303 1.492 -0.795 0.373 C14 A1ISH 4 A1ISH C16 C5 C 0 1 Y N N N N N -18.802 -10.376 -17.464 3.854 -1.327 -0.076 C16 A1ISH 5 A1ISH C17 C6 C 0 1 Y N N N N N -17.928 -9.449 -17.049 3.178 -0.776 -1.086 C17 A1ISH 6 A1ISH C19 C7 C 0 1 N N N N N N -20.293 -10.194 -17.617 5.303 -1.739 -0.102 C19 A1ISH 7 A1ISH C21 C8 C 0 1 N N N N N N -21.309 -8.769 -15.825 6.510 -0.352 1.597 C21 A1ISH 8 A1ISH C23 C9 C 0 1 Y N N N N N -21.217 -10.153 -14.078 7.410 1.227 0.319 C23 A1ISH 9 A1ISH C24 C10 C 0 1 Y N N N N N -20.728 -10.835 -15.169 6.685 0.360 -0.500 C24 A1ISH 10 A1ISH C25 C11 C 0 1 Y N N N N N -21.365 -10.730 -12.822 8.073 2.311 -0.237 C25 A1ISH 11 A1ISH C26 C12 C 0 1 Y N N N N N -20.948 -12.065 -12.748 8.012 2.528 -1.599 C26 A1ISH 12 A1ISH C27 C13 C 0 1 Y N N N N N -20.415 -12.752 -13.855 7.292 1.669 -2.412 C27 A1ISH 13 A1ISH C28 C14 C 0 1 Y N N N N N -20.312 -12.158 -15.117 6.629 0.587 -1.867 C28 A1ISH 14 A1ISH C30 C15 C 0 1 N N N N N N -14.360 -15.685 -15.634 -3.964 1.661 0.072 C30 A1ISH 15 A1ISH C4 C16 C 0 1 N N N N N N -12.369 -12.862 -20.814 -4.896 -2.606 0.864 C4 A1ISH 16 A1ISH C5 C17 C 0 1 N N N N N N -13.029 -12.748 -19.420 -4.231 -1.232 0.964 C5 A1ISH 17 A1ISH C6 C18 C 0 1 N N N N N N -13.288 -14.149 -18.811 -2.824 -1.301 0.367 C6 A1ISH 18 A1ISH F7 F1 F 0 1 N N N N N N -10.187 -13.078 -19.917 -5.745 -2.087 -1.312 F7 A1ISH 19 A1ISH F8 F2 F 0 1 N N N N N N -10.573 -13.874 -21.937 -5.592 -4.281 -0.696 F8 A1ISH 20 A1ISH C9 C19 C 0 1 N N S N N N -13.991 -14.047 -17.433 -2.159 0.073 0.467 C9 A1ISH 21 A1ISH C10 C20 C 0 1 N N N N N N -15.304 -13.311 -17.576 -0.724 -0.030 0.019 C10 A1ISH 22 A1ISH N11 N1 N 0 1 N N N N N N -14.303 -15.395 -16.940 -2.871 1.023 -0.391 N11 A1ISH 23 A1ISH N12 N2 N 0 1 N N N N N N -15.414 -12.002 -17.249 0.198 -0.583 0.832 N12 A1ISH 24 A1ISH O13 O1 O 0 1 N N N N N N -16.227 -13.962 -17.995 -0.398 0.386 -1.072 O13 A1ISH 25 A1ISH S15 S1 S 0 1 Y N N N N N -18.077 -11.938 -17.746 2.757 -1.485 1.293 S15 A1ISH 26 A1ISH N18 N3 N 0 1 Y N N N N N -16.619 -10.056 -16.952 1.915 -0.502 -0.817 N18 A1ISH 27 A1ISH N20 N4 N 0 1 N N N N N N -20.799 -9.952 -16.268 6.139 -0.616 0.330 N20 A1ISH 28 A1ISH N22 N5 N 0 1 N N N N N N -21.583 -8.859 -14.495 7.275 0.756 1.623 N22 A1ISH 29 A1ISH O29 O2 O 0 1 N N N N N N -21.427 -7.767 -16.491 6.198 -1.011 2.571 O29 A1ISH 30 A1ISH C31 C21 C 0 1 N N N N N N -14.689 -17.065 -15.255 -4.680 2.617 -0.791 C31 A1ISH 31 A1ISH O32 O3 O 0 1 N N N N N N -14.134 -14.854 -14.782 -4.359 1.449 1.202 O32 A1ISH 32 A1ISH C33 C22 C 0 1 N N N N N N -15.169 -17.540 -14.099 -5.831 3.148 -0.384 C33 A1ISH 33 A1ISH F34 F3 F 0 1 N N N N N N -14.520 -17.962 -16.211 -4.169 2.954 -1.995 F34 A1ISH 34 A1ISH C35 C23 C 0 1 N N N N N N -15.546 -16.841 -12.815 -6.489 2.647 0.876 C35 A1ISH 35 A1ISH C36 C24 C 0 1 N N N N N N -16.853 -17.322 -12.134 -6.551 3.602 2.069 C36 A1ISH 36 A1ISH C37 C25 C 0 1 N N N N N N -15.487 -17.762 -11.564 -7.821 3.282 1.279 C37 A1ISH 37 A1ISH H1 H1 H 0 1 N N N N N N -12.265 -16.023 -18.352 -1.910 -1.769 -1.527 H1 A1ISH 38 A1ISH H2 H2 H 0 1 N N N N N N -11.282 -14.551 -18.048 -3.505 -0.989 -1.653 H2 A1ISH 39 A1ISH H4 H3 H 0 1 N N N N N N -10.441 -15.716 -20.077 -3.641 -3.392 -2.248 H4 A1ISH 40 A1ISH H3 H4 H 0 1 N N N N N N -12.082 -15.671 -20.807 -2.985 -3.825 -0.650 H3 A1ISH 41 A1ISH H14 H5 H 0 1 N N N N N N -18.162 -8.419 -16.824 3.627 -0.571 -2.047 H14 A1ISH 42 A1ISH H16 H6 H 0 1 N N N N N N -20.510 -9.335 -18.269 5.453 -2.583 0.571 H16 A1ISH 43 A1ISH H15 H7 H 0 1 N N N N N N -20.749 -11.101 -18.041 5.580 -2.030 -1.115 H15 A1ISH 44 A1ISH H18 H8 H 0 1 N N N N N N -21.767 -10.194 -11.975 8.634 2.984 0.394 H18 A1ISH 45 A1ISH H19 H9 H 0 1 N N N N N N -21.039 -12.587 -11.807 8.528 3.372 -2.033 H19 A1ISH 46 A1ISH H20 H10 H 0 1 N N N N N N -20.075 -13.769 -13.726 7.249 1.845 -3.477 H20 A1ISH 47 A1ISH H21 H11 H 0 1 N N N N N N -19.939 -12.686 -15.982 6.069 -0.082 -2.504 H21 A1ISH 48 A1ISH H6 H12 H 0 1 N N N N N N -12.101 -11.859 -21.178 -5.898 -2.556 1.289 H6 A1ISH 49 A1ISH H5 H13 H 0 1 N N N N N N -13.072 -13.332 -21.517 -4.304 -3.337 1.415 H5 A1ISH 50 A1ISH H8 H14 H 0 1 N N N N N N -12.362 -12.183 -18.752 -4.823 -0.501 0.413 H8 A1ISH 51 A1ISH H7 H15 H 0 1 N N N N N N -13.987 -12.216 -19.518 -4.168 -0.934 2.010 H7 A1ISH 52 A1ISH H9 H16 H 0 1 N N N N N N -13.984 -14.668 -19.487 -2.231 -2.032 0.918 H9 A1ISH 53 A1ISH H10 H17 H 0 1 N N N N N N -13.337 -13.517 -16.725 -2.194 0.420 1.500 H10 A1ISH 54 A1ISH H11 H18 H 0 1 N N N N N N -14.479 -16.122 -17.603 -2.556 1.193 -1.293 H11 A1ISH 55 A1ISH H13 H19 H 0 1 N N N N N N -14.583 -11.540 -16.939 -0.043 -0.834 1.738 H13 A1ISH 56 A1ISH H17 H20 H 0 1 N N N N N N -21.972 -8.139 -13.920 7.665 1.158 2.415 H17 A1ISH 57 A1ISH H22 H21 H 0 1 N N N N N N -15.311 -18.610 -14.082 -6.293 3.939 -0.956 H22 A1ISH 58 A1ISH H23 H22 H 0 1 N N N N N N -15.260 -15.787 -12.687 -6.352 1.586 1.087 H23 A1ISH 59 A1ISH H25 H23 H 0 1 N N N N N N -17.476 -16.608 -11.576 -6.456 3.170 3.066 H25 A1ISH 60 A1ISH H24 H24 H 0 1 N N N N N N -17.498 -18.055 -12.640 -6.116 4.594 1.943 H24 A1ISH 61 A1ISH H26 H25 H 0 1 N N N N N N -15.160 -18.807 -11.666 -8.222 4.063 0.632 H26 A1ISH 62 A1ISH H27 H26 H 0 1 N N N N N N -15.138 -17.360 -10.601 -8.561 2.640 1.755 H27 A1ISH 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ISH C1 C2 SING N N 1 A1ISH C1 C6 SING N N 2 A1ISH C2 C3 SING N N 3 A1ISH C3 C4 SING N N 4 A1ISH C3 F7 SING N N 5 A1ISH C3 F8 SING N N 6 A1ISH C4 C5 SING N N 7 A1ISH C5 C6 SING N N 8 A1ISH C6 C9 SING N N 9 A1ISH C9 C10 SING N N 10 A1ISH C9 N11 SING N N 11 A1ISH C10 N12 SING N N 12 A1ISH C10 O13 DOUB N N 13 A1ISH N11 C30 SING N N 14 A1ISH N12 C14 SING N N 15 A1ISH C14 S15 SING Y N 16 A1ISH C14 N18 DOUB Y N 17 A1ISH S15 C16 SING Y N 18 A1ISH C16 C17 DOUB Y N 19 A1ISH C16 C19 SING N N 20 A1ISH C17 N18 SING Y N 21 A1ISH C19 N20 SING N N 22 A1ISH N20 C21 SING N N 23 A1ISH N20 C24 SING N N 24 A1ISH C21 N22 SING N N 25 A1ISH C21 O29 DOUB N N 26 A1ISH N22 C23 SING N N 27 A1ISH C23 C24 DOUB Y N 28 A1ISH C23 C25 SING Y N 29 A1ISH C24 C28 SING Y N 30 A1ISH C25 C26 DOUB Y N 31 A1ISH C26 C27 SING Y N 32 A1ISH C27 C28 DOUB Y N 33 A1ISH C30 C31 SING N N 34 A1ISH C30 O32 DOUB N N 35 A1ISH C31 C33 DOUB N E 36 A1ISH C31 F34 SING N N 37 A1ISH C33 C35 SING N N 38 A1ISH C35 C36 SING N N 39 A1ISH C35 C37 SING N N 40 A1ISH C36 C37 SING N N 41 A1ISH C1 H1 SING N N 42 A1ISH C1 H2 SING N N 43 A1ISH C2 H4 SING N N 44 A1ISH C2 H3 SING N N 45 A1ISH C17 H14 SING N N 46 A1ISH C19 H16 SING N N 47 A1ISH C19 H15 SING N N 48 A1ISH C25 H18 SING N N 49 A1ISH C26 H19 SING N N 50 A1ISH C27 H20 SING N N 51 A1ISH C28 H21 SING N N 52 A1ISH C4 H6 SING N N 53 A1ISH C4 H5 SING N N 54 A1ISH C5 H8 SING N N 55 A1ISH C5 H7 SING N N 56 A1ISH C6 H9 SING N N 57 A1ISH C9 H10 SING N N 58 A1ISH N11 H11 SING N N 59 A1ISH N12 H13 SING N N 60 A1ISH N22 H17 SING N N 61 A1ISH C33 H22 SING N N 62 A1ISH C35 H23 SING N N 63 A1ISH C36 H25 SING N N 64 A1ISH C36 H24 SING N N 65 A1ISH C37 H26 SING N N 66 A1ISH C37 H27 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ISH InChI InChI 1.06 "InChI=1S/C25H26F3N5O3S/c26-17(11-14-5-6-14)21(34)31-20(15-7-9-25(27,28)10-8-15)22(35)32-23-29-12-16(37-23)13-33-19-4-2-1-3-18(19)30-24(33)36/h1-4,11-12,14-15,20H,5-10,13H2,(H,30,36)(H,31,34)(H,29,32,35)/b17-11+/t20-/m0/s1" A1ISH InChIKey InChI 1.06 AJOCPADFBVGXDZ-KDMTZKAISA-N A1ISH SMILES_CANONICAL CACTVS 3.385 "FC(=C/C1CC1)/C(=O)N[C@@H](C2CCC(F)(F)CC2)C(=O)Nc3sc(CN4C(=O)Nc5ccccc45)cn3" A1ISH SMILES CACTVS 3.385 "FC(=CC1CC1)C(=O)N[CH](C2CCC(F)(F)CC2)C(=O)Nc3sc(CN4C(=O)Nc5ccccc45)cn3" A1ISH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)NC(=O)N2Cc3cnc(s3)NC(=O)[C@H](C4CCC(CC4)(F)F)NC(=O)/C(=C\C5CC5)/F" A1ISH SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)NC(=O)N2Cc3cnc(s3)NC(=O)C(C4CCC(CC4)(F)F)NC(=O)C(=CC5CC5)F" # _pdbx_chem_comp_identifier.comp_id A1ISH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{E})-~{N}-[(1~{S})-1-[4,4-bis(fluoranyl)cyclohexyl]-2-oxidanylidene-2-[[5-[(2-oxidanylidene-3~{H}-benzimidazol-1-yl)methyl]-1,3-thiazol-2-yl]amino]ethyl]-3-cyclopropyl-2-fluoranyl-prop-2-enamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ISH "Create component" 2024-10-23 PDBE A1ISH "Initial release" 2025-01-22 RCSB #