data_A1ISP # _chem_comp.id A1ISP _chem_comp.name "2-[(3S)-2,6-bis(oxidanylidene)piperidin-3-yl]-5-[(1S,2R,5S)-2-(ethylamino)-8-azabicyclo[3.2.1]octan-8-yl]isoindole-1,3-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H26 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-25 _chem_comp.pdbx_modified_date 2025-06-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.466 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ISP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9H59 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ISP C1 C1 C 0 1 N N N N N N 155.996 140.047 80.216 -6.902 3.361 0.154 C1 A1ISP 1 A1ISP C2 C2 C 0 1 N N N N N N 155.219 140.654 79.096 -6.893 1.911 -0.334 C2 A1ISP 2 A1ISP C3 C3 C 0 1 N N R N N N 152.975 141.417 78.422 -5.506 -0.055 -0.607 C3 A1ISP 3 A1ISP N4 N1 N 0 1 N N N N N N 149.197 137.806 86.783 6.105 1.142 -0.386 N4 A1ISP 4 A1ISP C5 C4 C 0 1 N N N N N N 153.734 143.775 78.857 -4.969 -0.925 1.680 C5 A1ISP 5 A1ISP C7 C5 C 0 1 N N N N N N 151.270 144.179 78.461 -3.665 -2.494 0.250 C7 A1ISP 6 A1ISP C8 C6 C 0 1 N N N N N N 150.741 142.749 78.203 -3.997 -1.958 -1.159 C8 A1ISP 7 A1ISP C9 C7 C 0 1 N N S N N N 151.647 141.848 79.033 -4.065 -0.422 -0.992 C9 A1ISP 8 A1ISP C10 C8 C 0 1 Y N N N N N 151.887 142.516 81.473 -1.860 -0.199 -0.147 C10 A1ISP 9 A1ISP C11 C9 C 0 1 Y N N N N N 152.536 143.417 82.305 -1.485 -0.479 -1.456 C11 A1ISP 10 A1ISP C12 C10 C 0 1 Y N N N N N 152.513 143.249 83.674 -0.148 -0.530 -1.805 C12 A1ISP 11 A1ISP C13 C11 C 0 1 Y N N N N N 151.832 142.161 84.178 0.826 -0.300 -0.843 C13 A1ISP 12 A1ISP C14 C12 C 0 1 Y N N N N N 151.185 141.253 83.352 0.450 -0.015 0.487 C14 A1ISP 13 A1ISP C15 C13 C 0 1 Y N N N N N 151.200 141.413 81.990 -0.889 0.034 0.829 C15 A1ISP 14 A1ISP C16 C14 C 0 1 N N N N N N 150.550 140.223 84.212 1.713 0.174 1.232 C16 A1ISP 15 A1ISP C17 C15 C 0 1 N N S N N N 150.161 140.086 86.713 4.153 0.116 0.754 C17 A1ISP 16 A1ISP C22 C16 C 0 1 N N N N N N 151.638 141.729 85.579 2.301 -0.275 -0.859 C22 A1ISP 17 A1ISP C18 C17 C 0 1 N N N N N N 148.742 140.592 86.955 4.861 -1.213 0.472 C18 A1ISP 18 A1ISP C19 C18 C 0 1 N N N N N N 147.736 139.675 86.289 6.354 -1.045 0.764 C19 A1ISP 19 A1ISP C20 C19 C 0 1 N N N N N N 147.904 138.285 86.795 6.891 0.112 -0.038 C20 A1ISP 20 A1ISP C21 C20 C 0 1 N N N N N N 150.336 138.569 86.652 4.808 1.206 -0.052 C21 A1ISP 21 A1ISP C4 C21 C 0 1 N N N N N N 153.669 142.641 77.836 -5.969 -0.981 0.522 C4 A1ISP 22 A1ISP C6 C22 C 0 1 N N R N N N 152.381 144.007 79.487 -3.564 -1.233 1.139 C6 A1ISP 23 A1ISP N1 N2 N 0 1 N N N N N N 153.807 140.804 79.459 -5.553 1.340 -0.148 N1 A1ISP 24 A1ISP N2 N3 N 0 1 N N N N N N 151.970 142.755 80.117 -3.207 -0.145 0.191 N2 A1ISP 25 A1ISP N3 N4 N 0 1 N N N N N N 150.754 140.654 85.525 2.740 0.006 0.381 N3 A1ISP 26 A1ISP O1 O1 O 0 1 N N N N N N 149.948 139.231 83.887 1.806 0.436 2.415 O1 A1ISP 27 A1ISP O2 O2 O 0 1 N N N N N N 147.001 137.614 87.260 8.055 0.111 -0.375 O2 A1ISP 28 A1ISP O3 O3 O 0 1 N N N N N N 151.424 138.049 86.525 4.150 2.161 -0.406 O3 A1ISP 29 A1ISP O4 O4 O 0 1 N N N N N N 152.118 142.186 86.588 3.002 -0.476 -1.831 O4 A1ISP 30 A1ISP H1 H1 H 0 1 N N N N N N 157.050 139.945 79.919 -7.897 3.785 0.016 H1 A1ISP 31 A1ISP H2 H2 H 0 1 N N N N N N 155.926 140.693 81.103 -6.638 3.390 1.211 H2 A1ISP 32 A1ISP H3 H3 H 0 1 N N N N N N 155.584 139.055 80.452 -6.178 3.941 -0.418 H3 A1ISP 33 A1ISP H4 H4 H 0 1 N N N N N N 155.296 140.005 78.211 -7.618 1.331 0.238 H4 A1ISP 34 A1ISP H5 H5 H 0 1 N N N N N N 155.638 141.644 78.862 -7.158 1.882 -1.391 H5 A1ISP 35 A1ISP H6 H6 H 0 1 N N N N N N 152.783 140.692 77.617 -6.158 -0.176 -1.472 H6 A1ISP 36 A1ISP H7 H7 H 0 1 N N N N N N 149.318 136.818 86.878 6.492 1.870 -0.896 H7 A1ISP 37 A1ISP H8 H8 H 0 1 N N N N N N 154.457 143.512 79.643 -4.979 0.071 2.123 H8 A1ISP 38 A1ISP H9 H9 H 0 1 N N N N N N 154.060 144.697 78.352 -5.240 -1.663 2.435 H9 A1ISP 39 A1ISP H10 H10 H 0 1 N N N N N N 151.665 144.619 77.533 -4.464 -3.145 0.605 H10 A1ISP 40 A1ISP H11 H11 H 0 1 N N N N N N 150.471 144.821 78.860 -2.716 -3.029 0.240 H11 A1ISP 41 A1ISP H12 H12 H 0 1 N N N N N N 149.695 142.657 78.532 -3.209 -2.229 -1.862 H12 A1ISP 42 A1ISP H13 H13 H 0 1 N N N N N N 150.814 142.495 77.135 -4.958 -2.346 -1.496 H13 A1ISP 43 A1ISP H14 H14 H 0 1 N N N N N N 151.089 140.971 79.394 -3.732 0.104 -1.887 H14 A1ISP 44 A1ISP H15 H15 H 0 1 N N N N N N 153.063 144.257 81.877 -2.242 -0.659 -2.204 H15 A1ISP 45 A1ISP H16 H16 H 0 1 N N N N N N 153.012 143.947 84.330 0.137 -0.749 -2.823 H16 A1ISP 46 A1ISP H17 H17 H 0 1 N N N N N N 150.699 140.712 81.339 -1.182 0.252 1.845 H17 A1ISP 47 A1ISP H18 H18 H 0 1 N N N N N N 150.759 140.429 87.570 4.231 0.353 1.815 H18 A1ISP 48 A1ISP H19 H19 H 0 1 N N N N N N 148.642 141.605 86.538 4.450 -1.991 1.115 H19 A1ISP 49 A1ISP H20 H20 H 0 1 N N N N N N 148.546 140.620 88.037 4.720 -1.489 -0.572 H20 A1ISP 50 A1ISP H21 H21 H 0 1 N N N N N N 147.895 139.689 85.201 6.489 -0.845 1.827 H21 A1ISP 51 A1ISP H22 H22 H 0 1 N N N N N N 146.718 140.025 86.515 6.888 -1.955 0.493 H22 A1ISP 52 A1ISP H23 H23 H 0 1 N N N N N N 154.692 142.366 77.538 -6.950 -0.662 0.874 H23 A1ISP 53 A1ISP H24 H24 H 0 1 N N N N N N 153.109 142.984 76.953 -6.034 -2.003 0.148 H24 A1ISP 54 A1ISP H25 H25 H 0 1 N N N N N N 152.404 144.846 80.198 -2.833 -1.351 1.939 H25 A1ISP 55 A1ISP H26 H26 H 0 1 N N N N N N 153.754 141.374 80.279 -5.258 1.414 0.814 H26 A1ISP 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ISP C4 C3 SING N N 1 A1ISP C4 C5 SING N N 2 A1ISP C8 C7 SING N N 3 A1ISP C8 C9 SING N N 4 A1ISP C3 C9 SING N N 5 A1ISP C3 N1 SING N N 6 A1ISP C7 C6 SING N N 7 A1ISP C5 C6 SING N N 8 A1ISP C9 N2 SING N N 9 A1ISP C2 N1 SING N N 10 A1ISP C2 C1 SING N N 11 A1ISP C6 N2 SING N N 12 A1ISP N2 C10 SING N N 13 A1ISP C10 C15 DOUB Y N 14 A1ISP C10 C11 SING Y N 15 A1ISP C15 C14 SING Y N 16 A1ISP C11 C12 DOUB Y N 17 A1ISP C14 C13 DOUB Y N 18 A1ISP C14 C16 SING N N 19 A1ISP C12 C13 SING Y N 20 A1ISP O1 C16 DOUB N N 21 A1ISP C13 C22 SING N N 22 A1ISP C16 N3 SING N N 23 A1ISP N3 C22 SING N N 24 A1ISP N3 C17 SING N N 25 A1ISP C22 O4 DOUB N N 26 A1ISP C19 C20 SING N N 27 A1ISP C19 C18 SING N N 28 A1ISP O3 C21 DOUB N N 29 A1ISP C21 C17 SING N N 30 A1ISP C21 N4 SING N N 31 A1ISP C17 C18 SING N N 32 A1ISP N4 C20 SING N N 33 A1ISP C20 O2 DOUB N N 34 A1ISP C1 H1 SING N N 35 A1ISP C1 H2 SING N N 36 A1ISP C1 H3 SING N N 37 A1ISP C2 H4 SING N N 38 A1ISP C2 H5 SING N N 39 A1ISP C3 H6 SING N N 40 A1ISP N4 H7 SING N N 41 A1ISP C5 H8 SING N N 42 A1ISP C5 H9 SING N N 43 A1ISP C7 H10 SING N N 44 A1ISP C7 H11 SING N N 45 A1ISP C8 H12 SING N N 46 A1ISP C8 H13 SING N N 47 A1ISP C9 H14 SING N N 48 A1ISP C11 H15 SING N N 49 A1ISP C12 H16 SING N N 50 A1ISP C15 H17 SING N N 51 A1ISP C17 H18 SING N N 52 A1ISP C18 H19 SING N N 53 A1ISP C18 H20 SING N N 54 A1ISP C19 H21 SING N N 55 A1ISP C19 H22 SING N N 56 A1ISP C4 H23 SING N N 57 A1ISP C4 H24 SING N N 58 A1ISP C6 H25 SING N N 59 A1ISP N1 H26 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ISP InChI InChI 1.06 "InChI=1S/C22H26N4O4/c1-2-23-16-7-4-12-5-8-17(16)25(12)13-3-6-14-15(11-13)22(30)26(21(14)29)18-9-10-19(27)24-20(18)28/h3,6,11-12,16-18,23H,2,4-5,7-10H2,1H3,(H,24,27,28)/t12-,16+,17-,18-/m0/s1" A1ISP InChIKey InChI 1.06 QAKJEKTXKXAPBP-LSZYVWPRSA-N A1ISP SMILES_CANONICAL CACTVS 3.385 "CCN[C@@H]1CC[C@H]2CC[C@@H]1N2c3ccc4C(=O)N([C@H]5CCC(=O)NC5=O)C(=O)c4c3" A1ISP SMILES CACTVS 3.385 "CCN[CH]1CC[CH]2CC[CH]1N2c3ccc4C(=O)N([CH]5CCC(=O)NC5=O)C(=O)c4c3" A1ISP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN[C@@H]1CC[C@H]2CC[C@@H]1N2c3ccc4c(c3)C(=O)N(C4=O)[C@H]5CCC(=O)NC5=O" A1ISP SMILES "OpenEye OEToolkits" 2.0.7 "CCNC1CCC2CCC1N2c3ccc4c(c3)C(=O)N(C4=O)C5CCC(=O)NC5=O" # _pdbx_chem_comp_identifier.comp_id A1ISP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-5-[(1~{S},2~{R},5~{S})-2-(ethylamino)-8-azabicyclo[3.2.1]octan-8-yl]isoindole-1,3-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ISP "Create component" 2024-10-25 PDBE A1ISP "Initial release" 2025-06-25 RCSB #