data_A1IT1 # _chem_comp.id A1IT1 _chem_comp.name "(3~{R})-3-[(3~{R})-3-phenyl-4-(phenylmethyl)piperazin-1-yl]carbonyl-2,3-dihydroinden-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H26 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3R)-3-[(3R)-4-benzyl-3-phenyl-piperidine-1-carbonyl]indan-1-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-13 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.508 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IT1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HDJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IT1 C2 C1 C 0 1 Y N N N N N -23.591 -2.532 20.693 -6.985 0.584 0.301 C2 A1IT1 1 A1IT1 C3 C2 C 0 1 Y N N N N N -24.782 -1.813 20.266 -6.287 0.951 1.439 C3 A1IT1 2 A1IT1 C4 C3 C 0 1 Y N N N N N -24.684 -0.752 19.362 -4.965 0.576 1.595 C4 A1IT1 3 A1IT1 C5 C4 C 0 1 Y N N N N N -23.334 -0.367 18.832 -4.330 -0.167 0.618 C5 A1IT1 4 A1IT1 C6 C5 C 0 1 Y N N N N N -22.189 -1.070 19.235 -5.024 -0.541 -0.532 C6 A1IT1 5 A1IT1 C7 C6 C 0 1 N N R N N N -22.927 0.746 17.837 -2.915 -0.688 0.547 C7 A1IT1 6 A1IT1 C8 C7 C 0 1 N N N N N N -21.408 0.736 17.783 -2.798 -1.438 -0.787 C8 A1IT1 7 A1IT1 C11 C8 C 0 1 N N N N N N -24.818 2.642 16.272 -0.099 -1.157 0.438 C11 A1IT1 8 A1IT1 C12 C9 C 0 1 N N N N N N -25.955 3.170 15.370 0.894 -1.230 -0.727 C12 A1IT1 9 A1IT1 C13 C10 C 0 1 N N R N N N -24.447 2.112 13.547 1.333 1.152 -0.607 C13 A1IT1 10 A1IT1 C14 C11 C 0 1 N N N N N N -24.630 0.978 14.492 0.357 1.323 0.569 C14 A1IT1 11 A1IT1 C17 C12 C 0 1 Y N N N N N -27.270 5.511 12.682 4.843 -1.476 0.069 C17 A1IT1 12 A1IT1 C18 C13 C 0 1 Y N N N N N -28.119 6.702 12.802 5.652 -2.589 -0.056 C18 A1IT1 13 A1IT1 C19 C14 C 0 1 Y N N N N N -29.371 6.606 13.429 5.174 -3.835 0.303 C19 A1IT1 14 A1IT1 C20 C15 C 0 1 Y N N N N N -29.816 5.334 13.960 3.886 -3.968 0.788 C20 A1IT1 15 A1IT1 C21 C16 C 0 1 Y N N N N N -29.008 4.199 13.840 3.077 -2.854 0.913 C21 A1IT1 16 A1IT1 C22 C17 C 0 1 Y N N N N N -24.408 1.493 12.102 2.427 2.183 -0.507 C22 A1IT1 17 A1IT1 C23 C18 C 0 1 Y N N N N N -25.239 0.409 11.744 3.645 1.960 -1.123 C23 A1IT1 18 A1IT1 C25 C19 C 0 1 Y N N N N N -24.242 0.384 9.505 4.436 4.074 -0.323 C25 A1IT1 19 A1IT1 C26 C20 C 0 1 Y N N N N N -23.364 1.478 9.871 3.216 4.299 0.288 C26 A1IT1 20 A1IT1 C27 C21 C 0 1 Y N N N N N -23.445 2.006 11.145 2.212 3.353 0.197 C27 A1IT1 21 A1IT1 C1 C22 C 0 1 Y N N N N N -22.328 -2.182 20.192 -6.368 -0.161 -0.679 C1 A1IT1 22 A1IT1 C10 C23 C 0 1 N N N N N N -23.377 0.500 16.453 -1.938 0.459 0.585 C10 A1IT1 23 A1IT1 C15 C24 C 0 1 N N N N N N -26.828 3.011 13.074 2.673 -0.394 0.689 C15 A1IT1 24 A1IT1 C16 C25 C 0 1 Y N N N N N -27.712 4.280 13.216 3.555 -1.608 0.553 C16 A1IT1 25 A1IT1 C24 C26 C 0 1 Y N N N N N -25.158 -0.143 10.416 4.649 2.906 -1.031 C24 A1IT1 26 A1IT1 C9 C27 C 0 1 N N N N N N -20.943 -0.438 18.504 -4.158 -1.323 -1.431 C9 A1IT1 27 A1IT1 N1 N1 N 0 1 N N N N N N -24.246 1.338 15.773 -0.613 0.218 0.533 N1 A1IT1 28 A1IT1 N2 N2 N 0 1 N N N N N N -25.582 3.100 13.886 1.921 -0.194 -0.557 N2 A1IT1 29 A1IT1 O1 O1 O 0 1 N N N N N N -19.704 -0.660 18.367 -4.480 -1.786 -2.504 O1 A1IT1 30 A1IT1 O2 O2 O 0 1 N N N N N N -22.981 -0.551 15.928 -2.345 1.599 0.662 O2 A1IT1 31 A1IT1 H2 H1 H 0 1 N N N N N N -23.680 -3.342 21.402 -8.017 0.880 0.183 H2 A1IT1 32 A1IT1 H3 H2 H 0 1 N N N N N N -25.749 -2.102 20.651 -6.776 1.532 2.206 H3 A1IT1 33 A1IT1 H4 H3 H 0 1 N N N N N N -25.568 -0.216 19.049 -4.426 0.865 2.485 H4 A1IT1 34 A1IT1 H5 H4 H 0 1 N N N N N N -23.288 1.720 18.199 -2.725 -1.369 1.377 H5 A1IT1 35 A1IT1 H6 H5 H 0 1 N N N N N N -21.071 0.690 16.737 -2.038 -0.973 -1.416 H6 A1IT1 36 A1IT1 H7 H6 H 0 1 N N N N N N -21.011 1.646 18.256 -2.555 -2.486 -0.612 H7 A1IT1 37 A1IT1 H9 H7 H 0 1 N N N N N N -24.014 3.392 16.302 -0.925 -1.845 0.260 H9 A1IT1 38 A1IT1 H8 H8 H 0 1 N N N N N N -25.214 2.489 17.287 0.405 -1.423 1.367 H8 A1IT1 39 A1IT1 H11 H9 H 0 1 N N N N N N -26.164 4.217 15.636 1.367 -2.212 -0.740 H11 A1IT1 40 A1IT1 H10 H10 H 0 1 N N N N N N -26.856 2.562 15.540 0.365 -1.069 -1.666 H10 A1IT1 41 A1IT1 H12 H11 H 0 1 N N N N N N -23.481 2.601 13.742 0.797 1.280 -1.547 H12 A1IT1 42 A1IT1 H14 H12 H 0 1 N N N N N N -25.690 0.685 14.502 0.908 1.298 1.509 H14 A1IT1 43 A1IT1 H13 H13 H 0 1 N N N N N N -24.018 0.128 14.158 -0.168 2.274 0.474 H13 A1IT1 44 A1IT1 H17 H14 H 0 1 N N N N N N -26.312 5.575 12.188 5.218 -0.502 -0.208 H17 A1IT1 45 A1IT1 H18 H15 H 0 1 N N N N N N -27.781 7.650 12.409 6.658 -2.486 -0.435 H18 A1IT1 46 A1IT1 H19 H16 H 0 1 N N N N N N -30.001 7.479 13.515 5.806 -4.706 0.205 H19 A1IT1 47 A1IT1 H20 H17 H 0 1 N N N N N N -30.775 5.262 14.450 3.512 -4.941 1.069 H20 A1IT1 48 A1IT1 H21 H18 H 0 1 N N N N N N -29.360 3.251 14.219 2.070 -2.957 1.291 H21 A1IT1 49 A1IT1 H22 H19 H 0 1 N N N N N N -25.932 -0.004 12.462 3.811 1.048 -1.677 H22 A1IT1 50 A1IT1 H24 H20 H 0 1 N N N N N N -24.186 -0.031 8.509 5.220 4.813 -0.252 H24 A1IT1 51 A1IT1 H25 H21 H 0 1 N N N N N N -22.657 1.875 9.158 3.050 5.211 0.841 H25 A1IT1 52 A1IT1 H26 H22 H 0 1 N N N N N N -22.784 2.810 11.432 1.260 3.529 0.674 H26 A1IT1 53 A1IT1 H1 H23 H 0 1 N N N N N N -21.453 -2.730 20.509 -6.915 -0.445 -1.566 H1 A1IT1 54 A1IT1 H16 H24 H 0 1 N N N N N N -27.407 2.137 13.408 1.976 -0.542 1.514 H16 A1IT1 55 A1IT1 H15 H25 H 0 1 N N N N N N -26.553 2.887 12.016 3.289 0.483 0.886 H15 A1IT1 56 A1IT1 H23 H26 H 0 1 N N N N N N -25.803 -0.960 10.127 5.601 2.730 -1.509 H23 A1IT1 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IT1 C25 C26 DOUB Y N 1 A1IT1 C25 C24 SING Y N 2 A1IT1 C26 C27 SING Y N 3 A1IT1 C24 C23 DOUB Y N 4 A1IT1 C27 C22 DOUB Y N 5 A1IT1 C23 C22 SING Y N 6 A1IT1 C22 C13 SING N N 7 A1IT1 C17 C18 DOUB Y N 8 A1IT1 C17 C16 SING Y N 9 A1IT1 C18 C19 SING Y N 10 A1IT1 C15 C16 SING N N 11 A1IT1 C15 N2 SING N N 12 A1IT1 C16 C21 DOUB Y N 13 A1IT1 C19 C20 DOUB Y N 14 A1IT1 C13 N2 SING N N 15 A1IT1 C13 C14 SING N N 16 A1IT1 C21 C20 SING Y N 17 A1IT1 N2 C12 SING N N 18 A1IT1 C14 N1 SING N N 19 A1IT1 C12 C11 SING N N 20 A1IT1 N1 C11 SING N N 21 A1IT1 N1 C10 SING N N 22 A1IT1 O2 C10 DOUB N N 23 A1IT1 C10 C7 SING N N 24 A1IT1 C8 C7 SING N N 25 A1IT1 C8 C9 SING N N 26 A1IT1 C7 C5 SING N N 27 A1IT1 O1 C9 DOUB N N 28 A1IT1 C9 C6 SING N N 29 A1IT1 C5 C6 DOUB Y N 30 A1IT1 C5 C4 SING Y N 31 A1IT1 C6 C1 SING Y N 32 A1IT1 C4 C3 DOUB Y N 33 A1IT1 C1 C2 DOUB Y N 34 A1IT1 C3 C2 SING Y N 35 A1IT1 C2 H2 SING N N 36 A1IT1 C3 H3 SING N N 37 A1IT1 C4 H4 SING N N 38 A1IT1 C7 H5 SING N N 39 A1IT1 C8 H6 SING N N 40 A1IT1 C8 H7 SING N N 41 A1IT1 C11 H9 SING N N 42 A1IT1 C11 H8 SING N N 43 A1IT1 C12 H11 SING N N 44 A1IT1 C12 H10 SING N N 45 A1IT1 C13 H12 SING N N 46 A1IT1 C14 H14 SING N N 47 A1IT1 C14 H13 SING N N 48 A1IT1 C17 H17 SING N N 49 A1IT1 C18 H18 SING N N 50 A1IT1 C19 H19 SING N N 51 A1IT1 C20 H20 SING N N 52 A1IT1 C21 H21 SING N N 53 A1IT1 C23 H22 SING N N 54 A1IT1 C25 H24 SING N N 55 A1IT1 C26 H25 SING N N 56 A1IT1 C27 H26 SING N N 57 A1IT1 C1 H1 SING N N 58 A1IT1 C15 H16 SING N N 59 A1IT1 C15 H15 SING N N 60 A1IT1 C24 H23 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IT1 InChI InChI 1.06 "InChI=1S/C27H26N2O2/c30-26-17-24(22-13-7-8-14-23(22)26)27(31)29-16-15-28(18-20-9-3-1-4-10-20)25(19-29)21-11-5-2-6-12-21/h1-14,24-25H,15-19H2/t24-,25+/m1/s1" A1IT1 InChIKey InChI 1.06 UTDHFZWVCNRNGD-RPBOFIJWSA-N A1IT1 SMILES_CANONICAL CACTVS 3.385 "O=C1C[C@@H](C(=O)N2CCN(Cc3ccccc3)[C@@H](C2)c4ccccc4)c5ccccc15" A1IT1 SMILES CACTVS 3.385 "O=C1C[CH](C(=O)N2CCN(Cc3ccccc3)[CH](C2)c4ccccc4)c5ccccc15" A1IT1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCN(C[C@H]2c3ccccc3)C(=O)[C@@H]4CC(=O)c5c4cccc5" A1IT1 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCN(CC2c3ccccc3)C(=O)C4CC(=O)c5c4cccc5" # _pdbx_chem_comp_identifier.comp_id A1IT1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R})-3-[(3~{R})-3-phenyl-4-(phenylmethyl)piperazin-1-yl]carbonyl-2,3-dihydroinden-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IT1 "Create component" 2024-11-13 PDBE A1IT1 "Initial release" 2024-11-27 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IT1 _pdbx_chem_comp_synonyms.name "(3R)-3-[(3R)-4-benzyl-3-phenyl-piperidine-1-carbonyl]indan-1-one" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #