data_A1ITF
#
_chem_comp.id A1ITF
_chem_comp.name "4-[(3~{S},5~{R})-3-[2-[(3~{R})-3-fluoranylpyrrolidin-1-yl]pyrimidin-4-yl]-5-methoxy-piperidin-1-yl]carbonyl-1~{H}-pyrrole-2-carbonitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H23 F N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-10-30
_chem_comp.pdbx_modified_date 2025-01-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 398.434
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1ITF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9H8S
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1ITF N1 N1 N 0 1 Y N N N N N 3.161 53.984 53.899 -6.333 -0.747 1.508 N1 A1ITF 1
A1ITF N3 N2 N 0 1 Y N N N N N 7.975 59.537 51.045 4.150 -1.417 -1.301 N3 A1ITF 2
A1ITF C4 C1 C 0 1 N N N N N N 5.968 55.210 50.062 -0.729 -1.243 -0.585 C4 A1ITF 3
A1ITF C5 C2 C 0 1 N N N N N N 5.274 53.757 48.228 -2.460 0.594 -0.733 C5 A1ITF 4
A1ITF C6 C3 C 0 1 N N N N N N 4.139 53.564 50.403 -2.938 -1.502 0.439 C6 A1ITF 5
A1ITF C7 C4 C 0 1 Y N N N N N 3.906 54.067 51.801 -4.327 -1.050 0.631 C7 A1ITF 6
A1ITF C8 C5 C 0 1 Y N N N N N 3.454 53.226 52.808 -5.146 -1.347 1.702 C8 A1ITF 7
A1ITF C10 C6 C 0 1 Y N N N N N 3.910 55.377 52.348 -5.074 -0.230 -0.247 C10 A1ITF 8
A1ITF C13 C7 C 0 1 Y N N N N N 7.451 58.246 49.092 1.862 -1.301 -1.755 C13 A1ITF 9
A1ITF C15 C8 C 0 1 Y N N N N N 6.981 58.865 51.653 3.944 -0.794 -0.150 C15 A1ITF 10
A1ITF C17 C9 C 0 1 N N N N N N 7.107 59.791 55.192 7.395 -0.228 0.796 C17 A1ITF 11
A1ITF F F1 F 0 1 N N N N N N 4.794 60.245 54.885 7.303 2.184 0.696 F A1ITF 12
A1ITF C18 C10 C 0 1 N N R N N N 5.720 59.204 55.054 6.707 1.063 1.284 C18 A1ITF 13
A1ITF C16 C11 C 0 1 N N N N N N 7.498 60.127 53.759 6.286 -1.032 0.083 C16 A1ITF 14
A1ITF C19 C12 C 0 1 N N N N N N 5.754 58.436 53.780 5.239 0.934 0.825 C19 A1ITF 15
A1ITF N5 N3 N 0 1 N N N N N N 6.750 59.140 52.972 5.020 -0.531 0.679 N5 A1ITF 16
A1ITF C14 C13 C 0 1 Y N N N N N 8.185 59.201 49.762 3.144 -1.683 -2.116 C14 A1ITF 17
A1ITF N4 N4 N 0 1 Y N N N N N 6.196 57.918 51.095 2.730 -0.415 0.225 N4 A1ITF 18
A1ITF C12 C14 C 0 1 Y N N N N N 6.454 57.617 49.814 1.681 -0.650 -0.545 C12 A1ITF 19
A1ITF C3 C15 C 0 1 N N S N N N 5.631 56.478 49.264 0.304 -0.216 -0.110 C3 A1ITF 20
A1ITF C2 C16 C 0 1 N N N N N N 5.736 56.192 47.756 -0.019 1.148 -0.724 C2 A1ITF 21
A1ITF N N5 N 0 1 N N N N N N 5.087 54.124 49.633 -2.075 -0.746 -0.268 N A1ITF 22
A1ITF C1 C17 C 0 1 N N R N N N 4.904 54.966 47.390 -1.403 1.604 -0.257 C1 A1ITF 23
A1ITF O O1 O 0 1 N N N N N N 4.434 54.606 46.085 -1.691 2.891 -0.806 O A1ITF 24
A1ITF C C18 C 0 1 N N N N N N 5.366 54.808 45.057 -2.543 3.695 0.013 C A1ITF 25
A1ITF O1 O2 O 0 1 N N N N N N 3.427 52.654 50.004 -2.570 -2.558 0.918 O1 A1ITF 26
A1ITF C9 C19 C 0 1 Y N N N N N 3.429 55.302 53.631 -6.304 -0.061 0.315 C9 A1ITF 27
A1ITF C11 C20 C 0 1 N N N N N N 3.157 56.356 54.556 -7.381 0.703 -0.240 C11 A1ITF 28
A1ITF N2 N6 N 0 1 N N N N N N 2.915 57.157 55.330 -8.236 1.309 -0.680 N2 A1ITF 29
A1ITF H1 H1 H 0 1 N N N N N N 2.804 53.633 54.765 -7.091 -0.793 2.112 H1 A1ITF 30
A1ITF H2 H2 H 0 1 N N N N N N 7.015 54.928 49.880 -0.636 -1.385 -1.661 H2 A1ITF 31
A1ITF H3 H3 H 0 1 N N N N N N 5.821 55.401 51.135 -0.561 -2.192 -0.076 H3 A1ITF 32
A1ITF H4 H4 H 0 1 N N N N N N 4.623 52.908 47.971 -2.508 0.602 -1.822 H4 A1ITF 33
A1ITF H5 H5 H 0 1 N N N N N N 6.324 53.482 48.048 -3.435 0.857 -0.322 H5 A1ITF 34
A1ITF H6 H6 H 0 1 N N N N N N 3.352 52.153 52.738 -4.879 -1.958 2.552 H6 A1ITF 35
A1ITF H7 H7 H 0 1 N N N N N N 4.235 56.275 51.843 -4.733 0.183 -1.185 H7 A1ITF 36
A1ITF H8 H8 H 0 1 N N N N N N 7.645 58.002 48.058 1.022 -1.505 -2.403 H8 A1ITF 37
A1ITF H9 H9 H 0 1 N N N N N N 7.802 59.058 55.627 8.197 0.011 0.097 H9 A1ITF 38
A1ITF H10 H10 H 0 1 N N N N N N 7.090 60.696 55.817 7.787 -0.792 1.642 H10 A1ITF 39
A1ITF H11 H11 H 0 1 N N N N N N 5.479 58.554 55.908 6.761 1.133 2.371 H11 A1ITF 40
A1ITF H12 H12 H 0 1 N N N N N N 8.582 60.014 53.608 6.304 -0.837 -0.989 H12 A1ITF 41
A1ITF H13 H13 H 0 1 N N N N N N 7.197 61.152 53.497 6.404 -2.098 0.278 H13 A1ITF 42
A1ITF H14 H14 H 0 1 N N N N N N 4.770 58.450 53.288 4.567 1.346 1.579 H14 A1ITF 43
A1ITF H15 H15 H 0 1 N N N N N N 6.060 57.395 53.959 5.093 1.439 -0.130 H15 A1ITF 44
A1ITF H16 H16 H 0 1 N N N N N N 8.973 59.708 49.225 3.319 -2.192 -3.053 H16 A1ITF 45
A1ITF H17 H17 H 0 1 N N N N N N 4.576 56.712 49.470 0.272 -0.144 0.977 H17 A1ITF 46
A1ITF H18 H18 H 0 1 N N N N N N 6.788 56.008 47.494 0.729 1.875 -0.408 H18 A1ITF 47
A1ITF H19 H19 H 0 1 N N N N N N 5.366 57.063 47.195 -0.011 1.068 -1.811 H19 A1ITF 48
A1ITF H20 H20 H 0 1 N N N N N N 3.953 55.240 47.871 -1.420 1.660 0.831 H20 A1ITF 49
A1ITF H21 H21 H 0 1 N N N N N N 4.924 54.507 44.096 -2.713 4.656 -0.474 H21 A1ITF 50
A1ITF H22 H22 H 0 1 N N N N N N 5.642 55.872 45.016 -3.496 3.186 0.155 H22 A1ITF 51
A1ITF H23 H23 H 0 1 N N N N N N 6.264 54.204 45.252 -2.069 3.857 0.981 H23 A1ITF 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1ITF C O SING N N 1
A1ITF O C1 SING N N 2
A1ITF C1 C2 SING N N 3
A1ITF C1 C5 SING N N 4
A1ITF C2 C3 SING N N 5
A1ITF C5 N SING N N 6
A1ITF C13 C14 DOUB Y N 7
A1ITF C13 C12 SING Y N 8
A1ITF C3 C12 SING N N 9
A1ITF C3 C4 SING N N 10
A1ITF N C4 SING N N 11
A1ITF N C6 SING N N 12
A1ITF C14 N3 SING Y N 13
A1ITF C12 N4 DOUB Y N 14
A1ITF O1 C6 DOUB N N 15
A1ITF C6 C7 SING N N 16
A1ITF N3 C15 DOUB Y N 17
A1ITF N4 C15 SING Y N 18
A1ITF C15 N5 SING N N 19
A1ITF C7 C10 SING Y N 20
A1ITF C7 C8 DOUB Y N 21
A1ITF C10 C9 DOUB Y N 22
A1ITF C8 N1 SING Y N 23
A1ITF N5 C16 SING N N 24
A1ITF N5 C19 SING N N 25
A1ITF C9 N1 SING Y N 26
A1ITF C9 C11 SING N N 27
A1ITF C16 C17 SING N N 28
A1ITF C19 C18 SING N N 29
A1ITF C11 N2 TRIP N N 30
A1ITF F C18 SING N N 31
A1ITF C18 C17 SING N N 32
A1ITF N1 H1 SING N N 33
A1ITF C4 H2 SING N N 34
A1ITF C4 H3 SING N N 35
A1ITF C5 H4 SING N N 36
A1ITF C5 H5 SING N N 37
A1ITF C8 H6 SING N N 38
A1ITF C10 H7 SING N N 39
A1ITF C13 H8 SING N N 40
A1ITF C17 H9 SING N N 41
A1ITF C17 H10 SING N N 42
A1ITF C18 H11 SING N N 43
A1ITF C16 H12 SING N N 44
A1ITF C16 H13 SING N N 45
A1ITF C19 H14 SING N N 46
A1ITF C19 H15 SING N N 47
A1ITF C14 H16 SING N N 48
A1ITF C3 H17 SING N N 49
A1ITF C2 H18 SING N N 50
A1ITF C2 H19 SING N N 51
A1ITF C1 H20 SING N N 52
A1ITF C H21 SING N N 53
A1ITF C H22 SING N N 54
A1ITF C H23 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1ITF InChI InChI 1.06 "InChI=1S/C20H23FN6O2/c1-29-17-7-14(10-27(12-17)19(28)13-6-16(8-22)24-9-13)18-2-4-23-20(25-18)26-5-3-15(21)11-26/h2,4,6,9,14-15,17,24H,3,5,7,10-12H2,1H3/t14-,15+,17+/m0/s1"
A1ITF InChIKey InChI 1.06 OVZHFGJRKASRRF-ZMSDIMECSA-N
A1ITF SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1C[C@@H](CN(C1)C(=O)c2c[nH]c(c2)C#N)c3ccnc(n3)N4CC[C@@H](F)C4"
A1ITF SMILES CACTVS 3.385 "CO[CH]1C[CH](CN(C1)C(=O)c2c[nH]c(c2)C#N)c3ccnc(n3)N4CC[CH](F)C4"
A1ITF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@@H]1C[C@@H](CN(C1)C(=O)c2cc([nH]c2)C#N)c3ccnc(n3)N4CC[C@H](C4)F"
A1ITF SMILES "OpenEye OEToolkits" 2.0.7 "COC1CC(CN(C1)C(=O)c2cc([nH]c2)C#N)c3ccnc(n3)N4CCC(C4)F"
#
_pdbx_chem_comp_identifier.comp_id A1ITF
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "4-[(3~{S},5~{R})-3-[2-[(3~{R})-3-fluoranylpyrrolidin-1-yl]pyrimidin-4-yl]-5-methoxy-piperidin-1-yl]carbonyl-1~{H}-pyrrole-2-carbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1ITF "Create component" 2024-10-30 PDBE
A1ITF "Initial release" 2025-01-22 RCSB
#