data_A1ITH # _chem_comp.id A1ITH _chem_comp.name Norclomipramine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H21 Cl N2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-(2-chloranyl-5,6-dihydrobenzo[b][1]benzazepin-11-yl)-N-methyl-propan-1-amine; Desmethylclomipramine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-01 _chem_comp.pdbx_modified_date 2025-05-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 300.826 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ITH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9H9O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ITH C01 C1 C 0 1 N N N N N N -37.915 -9.653 -8.505 3.839 4.820 -0.097 C01 A1ITH 1 A1ITH N02 N1 N 0 1 N N N N N N -37.621 -11.018 -8.102 3.186 3.608 -0.609 N02 A1ITH 2 A1ITH C03 C2 C 0 1 N N N N N N -36.189 -11.159 -7.871 2.500 2.884 0.469 C03 A1ITH 3 A1ITH C04 C3 C 0 1 N N N N N N -35.819 -12.635 -7.829 1.834 1.630 -0.101 C04 A1ITH 4 A1ITH C05 C4 C 0 1 N N N N N N -34.454 -12.964 -7.212 1.119 0.876 1.022 C05 A1ITH 5 A1ITH N06 N2 N 0 1 N N N N N N -33.729 -13.841 -8.130 0.392 -0.264 0.459 N06 A1ITH 6 A1ITH C07 C5 C 0 1 Y N N N N N -32.981 -13.231 -9.227 1.008 -1.509 0.466 C07 A1ITH 7 A1ITH C08 C6 C 0 1 Y N N N N N -31.910 -12.325 -9.026 1.639 -1.870 1.664 C08 A1ITH 8 A1ITH C09 C7 C 0 1 Y N N N N N -31.232 -11.809 -10.115 2.256 -3.092 1.798 C09 A1ITH 9 A1ITH C10 C8 C 0 1 Y N N N N N -31.596 -12.192 -11.391 2.244 -3.977 0.735 C10 A1ITH 10 A1ITH C11 C9 C 0 1 Y N N N N N -32.633 -13.092 -11.583 1.629 -3.624 -0.444 C11 A1ITH 11 A1ITH C12 C10 C 0 1 Y N N N N N -33.318 -13.612 -10.461 1.013 -2.379 -0.600 C12 A1ITH 12 A1ITH C13 C11 C 0 1 N N N N N N -34.473 -14.613 -10.590 0.442 -2.136 -1.976 C13 A1ITH 13 A1ITH C14 C12 C 0 1 N N N N N N -34.011 -16.023 -10.239 0.071 -0.701 -2.253 C14 A1ITH 14 A1ITH C15 C13 C 0 1 Y N N N N N -33.535 -16.218 -8.767 -1.067 -0.234 -1.397 C15 A1ITH 15 A1ITH C16 C14 C 0 1 Y N N N N N -33.439 -15.227 -7.788 -0.885 -0.047 -0.052 C16 A1ITH 16 A1ITH C17 C15 C 0 1 Y N N N N N -32.971 -15.508 -6.477 -1.935 0.346 0.766 C17 A1ITH 17 A1ITH C18 C16 C 0 1 Y N N N N N -32.665 -16.834 -6.207 -3.178 0.576 0.203 C18 A1ITH 18 A1ITH C19 C17 C 0 1 Y N N N N N -32.773 -17.831 -7.172 -3.359 0.413 -1.160 C19 A1ITH 19 A1ITH C20 C18 C 0 1 Y N N N N N -33.211 -17.545 -8.466 -2.309 0.005 -1.964 C20 A1ITH 20 A1ITH CL21 CL1 CL 0 0 N N N N N N -32.094 -17.332 -4.622 -4.509 1.067 1.204 CL21 A1ITH 21 A1ITH H1 H1 H 0 1 N N N N N N -38.996 -9.546 -8.679 3.090 5.477 0.344 H1 A1ITH 22 A1ITH H2 H2 H 0 1 N N N N N N -37.602 -8.961 -7.710 4.573 4.545 0.661 H2 A1ITH 23 A1ITH H3 H3 H 0 1 N N N N N N -37.369 -9.419 -9.431 4.340 5.337 -0.916 H3 A1ITH 24 A1ITH H4 H4 H 0 1 N N N N N N -38.117 -11.231 -7.260 2.548 3.830 -1.358 H4 A1ITH 25 A1ITH H6 H6 H 0 1 N N N N N N -35.637 -10.667 -8.685 3.224 2.595 1.231 H6 A1ITH 26 A1ITH H7 H7 H 0 1 N N N N N N -35.925 -10.688 -6.912 1.742 3.528 0.914 H7 A1ITH 27 A1ITH H8 H8 H 0 1 N N N N N N -36.589 -13.159 -7.244 1.110 1.919 -0.863 H8 A1ITH 28 A1ITH H9 H9 H 0 1 N N N N N N -35.822 -13.013 -8.862 2.592 0.986 -0.546 H9 A1ITH 29 A1ITH H10 H10 H 0 1 N N N N N N -34.596 -13.473 -6.247 1.854 0.518 1.744 H10 A1ITH 30 A1ITH H11 H11 H 0 1 N N N N N N -33.884 -12.036 -7.057 0.417 1.545 1.520 H11 A1ITH 31 A1ITH H12 H12 H 0 1 N N N N N N -31.624 -12.038 -8.025 1.641 -1.178 2.493 H12 A1ITH 32 A1ITH H13 H13 H 0 1 N N N N N N -30.422 -11.110 -9.969 2.744 -3.358 2.724 H13 A1ITH 33 A1ITH H14 H14 H 0 1 N N N N N N -31.070 -11.788 -12.244 2.716 -4.943 0.830 H14 A1ITH 34 A1ITH H15 H15 H 0 1 N N N N N N -32.915 -13.393 -12.581 1.623 -4.323 -1.266 H15 A1ITH 35 A1ITH H16 H16 H 0 1 N N N N N N -35.283 -14.319 -9.907 1.177 -2.452 -2.716 H16 A1ITH 36 A1ITH H17 H17 H 0 1 N N N N N N -34.845 -14.603 -11.625 -0.449 -2.753 -2.094 H17 A1ITH 37 A1ITH H18 H18 H 0 1 N N N N N N -34.850 -16.711 -10.419 0.938 -0.068 -2.065 H18 A1ITH 38 A1ITH H19 H19 H 0 1 N N N N N N -33.175 -16.283 -10.904 -0.214 -0.606 -3.301 H19 A1ITH 39 A1ITH H20 H20 H 0 1 N N N N N N -32.860 -14.734 -5.733 -1.784 0.471 1.829 H20 A1ITH 40 A1ITH H21 H21 H 0 1 N N N N N N -32.513 -18.847 -6.914 -4.328 0.601 -1.599 H21 A1ITH 41 A1ITH H22 H22 H 0 1 N N N N N N -33.297 -18.323 -9.210 -2.456 -0.127 -3.025 H22 A1ITH 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ITH C11 C10 DOUB Y N 1 A1ITH C11 C12 SING Y N 2 A1ITH C10 C09 SING Y N 3 A1ITH C13 C12 SING N N 4 A1ITH C13 C14 SING N N 5 A1ITH C12 C07 DOUB Y N 6 A1ITH C14 C15 SING N N 7 A1ITH C09 C08 DOUB Y N 8 A1ITH C07 C08 SING Y N 9 A1ITH C07 N06 SING N N 10 A1ITH C15 C20 SING Y N 11 A1ITH C15 C16 DOUB Y N 12 A1ITH C01 N02 SING N N 13 A1ITH C20 C19 DOUB Y N 14 A1ITH N06 C16 SING N N 15 A1ITH N06 C05 SING N N 16 A1ITH N02 C03 SING N N 17 A1ITH C03 C04 SING N N 18 A1ITH C04 C05 SING N N 19 A1ITH C16 C17 SING Y N 20 A1ITH C19 C18 SING Y N 21 A1ITH C17 C18 DOUB Y N 22 A1ITH C18 CL21 SING N N 23 A1ITH C01 H1 SING N N 24 A1ITH C01 H2 SING N N 25 A1ITH C01 H3 SING N N 26 A1ITH N02 H4 SING N N 27 A1ITH C03 H6 SING N N 28 A1ITH C03 H7 SING N N 29 A1ITH C04 H8 SING N N 30 A1ITH C04 H9 SING N N 31 A1ITH C05 H10 SING N N 32 A1ITH C05 H11 SING N N 33 A1ITH C08 H12 SING N N 34 A1ITH C09 H13 SING N N 35 A1ITH C10 H14 SING N N 36 A1ITH C11 H15 SING N N 37 A1ITH C13 H16 SING N N 38 A1ITH C13 H17 SING N N 39 A1ITH C14 H18 SING N N 40 A1ITH C14 H19 SING N N 41 A1ITH C17 H20 SING N N 42 A1ITH C19 H21 SING N N 43 A1ITH C20 H22 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ITH InChI InChI 1.06 "InChI=1S/C18H21ClN2/c1-20-11-4-12-21-17-6-3-2-5-14(17)7-8-15-9-10-16(19)13-18(15)21/h2-3,5-6,9-10,13,20H,4,7-8,11-12H2,1H3" A1ITH InChIKey InChI 1.06 VPIXQGUBUKFLRF-UHFFFAOYSA-N A1ITH SMILES_CANONICAL CACTVS 3.385 "CNCCCN1c2ccccc2CCc3ccc(Cl)cc13" A1ITH SMILES CACTVS 3.385 "CNCCCN1c2ccccc2CCc3ccc(Cl)cc13" A1ITH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNCCCN1c2ccccc2CCc3c1cc(cc3)Cl" A1ITH SMILES "OpenEye OEToolkits" 2.0.7 "CNCCCN1c2ccccc2CCc3c1cc(cc3)Cl" # _pdbx_chem_comp_identifier.comp_id A1ITH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-(2-chloranyl-5,6-dihydrobenzo[b][1]benzazepin-11-yl)-~{N}-methyl-propan-1-amine" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 A1ITH "3-(2-chloranyl-5,6-dihydrobenzo[b][1]benzazepin-11-yl)-N-methyl-propan-1-amine" PDB ? 2 A1ITH Desmethylclomipramine PUBCHEM ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ITH "Create component" 2024-11-01 PDBE A1ITH "Modify synonyms" 2024-11-04 PDBE A1ITH "Initial release" 2025-06-04 RCSB #