data_A1ITV # _chem_comp.id A1ITV _chem_comp.name "(1~{R})-~{N}-[4-[2,4-bis(oxidanylidene)-1~{H}-pyrimidin-5-yl]phenyl]-~{N}-(3-chlorophenyl)-3-oxidanylidene-1,2-dihydroindene-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H18 Cl N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1R)-N-(3-chlorophenyl)-N-[4-(2,4-dioxo-1H-pyrimidin-5-yl)phenyl]-3-oxo-indane-1-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-12 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.892 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ITV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HD8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ITV C4 C1 C 0 1 N N N N N N 8.907 -0.023 20.911 -1.590 -0.716 -0.315 C4 A1ITV 1 A1ITV C14 C2 C 0 1 Y N N N N N 8.289 -1.279 23.903 1.156 -1.084 -0.438 C14 A1ITV 2 A1ITV C5 C3 C 0 1 Y N N N N N 9.095 -1.648 22.838 0.616 0.099 0.051 C5 A1ITV 3 A1ITV C6 C4 C 0 1 Y N N N N N 9.604 -2.926 22.764 1.449 1.087 0.562 C6 A1ITV 4 A1ITV C11 C5 C 0 1 N N N N N N 7.686 -6.577 27.740 7.537 -0.868 0.150 C11 A1ITV 5 A1ITV C7 C6 C 0 1 Y N N N N N 9.246 -3.859 23.717 2.814 0.895 0.586 C7 A1ITV 6 A1ITV C8 C7 C 0 1 Y N N N N N 8.421 -3.522 24.788 3.358 -0.292 0.097 C8 A1ITV 7 A1ITV C9 C8 C 0 1 N N N N N N 8.123 -4.561 25.809 4.826 -0.501 0.121 C9 A1ITV 8 A1ITV C10 C9 C 0 1 N N N N N N 9.157 -5.401 26.254 5.380 -1.479 0.892 C10 A1ITV 9 A1ITV C12 C10 C 0 1 N N N N N N 6.797 -4.726 26.386 5.721 0.344 -0.682 C12 A1ITV 10 A1ITV C13 C11 C 0 1 Y N N N N N 7.944 -2.217 24.860 2.520 -1.284 -0.410 C13 A1ITV 11 A1ITV N1 N1 N 0 1 N N N N N N 9.574 -0.650 21.912 -0.770 0.297 0.027 N1 A1ITV 12 A1ITV N2 N2 N 0 1 N N N N N N 8.935 -6.366 27.175 6.736 -1.648 0.893 N2 A1ITV 13 A1ITV C3 C12 C 0 1 N N R N N N 7.632 -0.665 20.426 -3.084 -0.536 -0.236 C3 A1ITV 14 A1ITV N3 N3 N 0 1 N N N N N N 6.671 -5.744 27.314 7.049 0.115 -0.627 N3 A1ITV 15 A1ITV O1 O1 O 0 1 N N N N N N 7.221 0.619 17.128 -4.982 -1.515 2.664 O1 A1ITV 16 A1ITV C1 C13 C 0 1 N N N N N N 7.132 0.303 18.296 -4.431 -1.376 1.592 C1 A1ITV 17 A1ITV C2 C14 C 0 1 N N N N N N 7.776 -0.896 18.915 -3.504 -0.247 1.212 C2 A1ITV 18 A1ITV O2 O2 O 0 1 N N N N N N 9.361 0.959 20.363 -1.125 -1.772 -0.691 O2 A1ITV 19 A1ITV O3 O3 O 0 1 N N N N N N 7.478 -7.450 28.577 8.738 -1.054 0.183 O3 A1ITV 20 A1ITV O4 O4 O 0 1 N N N N N N 5.801 -4.097 26.080 5.272 1.230 -1.386 O4 A1ITV 21 A1ITV C15 C15 C 0 1 Y N N N N N 10.969 -0.306 22.094 -1.305 1.549 0.358 C15 A1ITV 22 A1ITV C16 C16 C 0 1 Y N N N N N 11.300 0.703 22.975 -1.205 2.025 1.659 C16 A1ITV 23 A1ITV C17 C17 C 0 1 Y N N N N N 12.633 1.025 23.154 -1.733 3.260 1.983 C17 A1ITV 24 A1ITV C18 C18 C 0 1 Y N N N N N 13.628 0.300 22.542 -2.361 4.021 1.015 C18 A1ITV 25 A1ITV C19 C19 C 0 1 Y N N N N N 13.285 -0.746 21.721 -2.462 3.549 -0.283 C19 A1ITV 26 A1ITV CL1 CL1 CL 0 0 N N N N N N 14.538 -1.654 20.908 -3.252 4.508 -1.495 CL1 A1ITV 27 A1ITV C20 C20 C 0 1 Y N N N N N 11.960 -1.059 21.483 -1.930 2.318 -0.614 C20 A1ITV 28 A1ITV C21 C21 C 0 1 Y N N N N N 6.550 0.384 20.558 -3.782 -1.815 -0.632 C21 A1ITV 29 A1ITV C22 C22 C 0 1 Y N N N N N 5.853 0.808 21.687 -3.756 -2.521 -1.819 C22 A1ITV 30 A1ITV C23 C23 C 0 1 Y N N N N N 4.922 1.829 21.543 -4.488 -3.687 -1.956 C23 A1ITV 31 A1ITV C24 C24 C 0 1 Y N N N N N 4.670 2.369 20.290 -5.253 -4.155 -0.902 C24 A1ITV 32 A1ITV C25 C25 C 0 1 Y N N N N N 5.346 1.951 19.165 -5.290 -3.463 0.288 C25 A1ITV 33 A1ITV C26 C26 C 0 1 Y N N N N N 6.287 0.933 19.321 -4.551 -2.279 0.436 C26 A1ITV 34 A1ITV H10 H1 H 0 1 N N N N N N 7.931 -0.263 23.986 0.506 -1.850 -0.834 H10 A1ITV 35 A1ITV H4 H2 H 0 1 N N N N N N 10.279 -3.197 21.965 1.026 2.006 0.941 H4 A1ITV 36 A1ITV H5 H3 H 0 1 N N N N N N 9.613 -4.871 23.630 3.461 1.663 0.983 H5 A1ITV 37 A1ITV H6 H4 H 0 1 N N N N N N 10.151 -5.273 25.852 4.751 -2.118 1.495 H6 A1ITV 38 A1ITV H9 H5 H 0 1 N N N N N N 7.295 -1.932 25.675 2.939 -2.204 -0.790 H9 A1ITV 39 A1ITV H7 H6 H 0 1 N N N N N N 9.698 -6.947 27.458 7.127 -2.345 1.443 H7 A1ITV 40 A1ITV H3 H7 H 0 1 N N N N N N 7.391 -1.591 20.968 -3.398 0.279 -0.888 H3 A1ITV 41 A1ITV H8 H8 H 0 1 N N N N N N 5.765 -5.889 27.711 7.656 0.663 -1.149 H8 A1ITV 42 A1ITV H2 H9 H 0 1 N N N N N N 7.258 -1.817 18.610 -2.631 -0.239 1.864 H2 A1ITV 43 A1ITV H1 H10 H 0 1 N N N N N N 8.836 -0.960 18.630 -4.028 0.707 1.269 H1 A1ITV 44 A1ITV H11 H11 H 0 1 N N N N N N 10.530 1.233 23.516 -0.715 1.431 2.416 H11 A1ITV 45 A1ITV H12 H12 H 0 1 N N N N N N 12.897 1.860 23.785 -1.656 3.631 2.994 H12 A1ITV 46 A1ITV H13 H13 H 0 1 N N N N N N 14.666 0.550 22.705 -2.773 4.986 1.271 H13 A1ITV 47 A1ITV H14 H14 H 0 1 N N N N N N 11.700 -1.879 20.830 -2.005 1.952 -1.628 H14 A1ITV 48 A1ITV H15 H15 H 0 1 N N N N N N 6.032 0.354 22.651 -3.160 -2.161 -2.645 H15 A1ITV 49 A1ITV H16 H16 H 0 1 N N N N N N 4.394 2.203 22.408 -4.462 -4.233 -2.887 H16 A1ITV 50 A1ITV H17 H17 H 0 1 N N N N N N 3.921 3.141 20.194 -5.824 -5.065 -1.014 H17 A1ITV 51 A1ITV H18 H18 H 0 1 N N N N N N 5.155 2.394 18.199 -5.889 -3.831 1.108 H18 A1ITV 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ITV O1 C1 DOUB N N 1 A1ITV C1 C2 SING N N 2 A1ITV C2 C3 SING N N 3 A1ITV C3 C4 SING N N 4 A1ITV C4 O2 DOUB N N 5 A1ITV C4 N1 SING N N 6 A1ITV N1 C5 SING N N 7 A1ITV C5 C6 DOUB Y N 8 A1ITV C6 C7 SING Y N 9 A1ITV C7 C8 DOUB Y N 10 A1ITV C8 C9 SING N N 11 A1ITV C9 C10 DOUB N N 12 A1ITV C10 N2 SING N N 13 A1ITV N2 C11 SING N N 14 A1ITV C11 O3 DOUB N N 15 A1ITV C11 N3 SING N N 16 A1ITV N3 C12 SING N N 17 A1ITV C12 O4 DOUB N N 18 A1ITV C8 C13 SING Y N 19 A1ITV C13 C14 DOUB Y N 20 A1ITV N1 C15 SING N N 21 A1ITV C15 C16 DOUB Y N 22 A1ITV C16 C17 SING Y N 23 A1ITV C17 C18 DOUB Y N 24 A1ITV C18 C19 SING Y N 25 A1ITV C19 CL1 SING N N 26 A1ITV C19 C20 DOUB Y N 27 A1ITV C3 C21 SING N N 28 A1ITV C21 C22 DOUB Y N 29 A1ITV C22 C23 SING Y N 30 A1ITV C23 C24 DOUB Y N 31 A1ITV C24 C25 SING Y N 32 A1ITV C25 C26 DOUB Y N 33 A1ITV C1 C26 SING N N 34 A1ITV C5 C14 SING Y N 35 A1ITV C15 C20 SING Y N 36 A1ITV C21 C26 SING Y N 37 A1ITV C9 C12 SING N N 38 A1ITV C14 H10 SING N N 39 A1ITV C6 H4 SING N N 40 A1ITV C7 H5 SING N N 41 A1ITV C10 H6 SING N N 42 A1ITV C13 H9 SING N N 43 A1ITV N2 H7 SING N N 44 A1ITV C3 H3 SING N N 45 A1ITV N3 H8 SING N N 46 A1ITV C2 H2 SING N N 47 A1ITV C2 H1 SING N N 48 A1ITV C16 H11 SING N N 49 A1ITV C17 H12 SING N N 50 A1ITV C18 H13 SING N N 51 A1ITV C20 H14 SING N N 52 A1ITV C22 H15 SING N N 53 A1ITV C23 H16 SING N N 54 A1ITV C24 H17 SING N N 55 A1ITV C25 H18 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ITV InChI InChI 1.06 "InChI=1S/C26H18ClN3O4/c27-16-4-3-5-18(12-16)30(25(33)21-13-23(31)20-7-2-1-6-19(20)21)17-10-8-15(9-11-17)22-14-28-26(34)29-24(22)32/h1-12,14,21H,13H2,(H2,28,29,32,34)/t21-/m1/s1" A1ITV InChIKey InChI 1.06 WUIFAQSQLPAHRA-OAQYLSRUSA-N A1ITV SMILES_CANONICAL CACTVS 3.385 "Clc1cccc(c1)N(C(=O)[C@@H]2CC(=O)c3ccccc23)c4ccc(cc4)C5=CNC(=O)NC5=O" A1ITV SMILES CACTVS 3.385 "Clc1cccc(c1)N(C(=O)[CH]2CC(=O)c3ccccc23)c4ccc(cc4)C5=CNC(=O)NC5=O" A1ITV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[C@@H](CC2=O)C(=O)N(c3ccc(cc3)C4=CNC(=O)NC4=O)c5cccc(c5)Cl" A1ITV SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(CC2=O)C(=O)N(c3ccc(cc3)C4=CNC(=O)NC4=O)c5cccc(c5)Cl" # _pdbx_chem_comp_identifier.comp_id A1ITV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R})-~{N}-[4-[2,4-bis(oxidanylidene)-1~{H}-pyrimidin-5-yl]phenyl]-~{N}-(3-chlorophenyl)-3-oxidanylidene-1,2-dihydroindene-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ITV "Create component" 2024-11-12 PDBE A1ITV "Initial release" 2024-11-27 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1ITV _pdbx_chem_comp_synonyms.name "(1R)-N-(3-chlorophenyl)-N-[4-(2,4-dioxo-1H-pyrimidin-5-yl)phenyl]-3-oxo-indane-1-carboxamide" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #