data_A1IU9 # _chem_comp.id A1IU9 _chem_comp.name "((S)-2-(6-(6-methoxypyridin-3-yl)-1-oxoisoindolin-2-yl)-3-phenylpropanoyl)-L-glutamine" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H28 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{S})-5-azanyl-2-[[(2~{S})-2-[5-(6-methoxypyridin-3-yl)-3-oxidanylidene-1~{H}-isoindol-2-yl]-3-phenyl-propanoyl]amino]-5-oxidanylidene-pentanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-26 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.545 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IU9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HIN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IU9 C1 C1 C 0 1 N N N N N N -28.765 -25.535 -6.826 9.191 2.698 1.535 C1 A1IU9 1 A1IU9 C3 C2 C 0 1 Y N N N N N -27.529 -26.070 -4.887 7.909 1.423 -0.007 C3 A1IU9 2 A1IU9 C4 C3 C 0 1 Y N N N N N -27.508 -26.131 -3.534 7.782 0.661 -1.162 C4 A1IU9 3 A1IU9 C5 C4 C 0 1 Y N N N N N -26.449 -26.789 -2.949 6.543 0.156 -1.505 C5 A1IU9 4 A1IU9 C6 C5 C 0 1 Y N N N N N -25.443 -27.351 -3.715 5.457 0.435 -0.668 C6 A1IU9 5 A1IU9 C7 C6 C 0 1 Y N N N N N -24.302 -28.051 -3.070 4.105 -0.085 -0.992 C7 A1IU9 6 A1IU9 C8 C7 C 0 1 Y N N N N N -23.061 -28.220 -3.704 3.912 -0.861 -2.134 C8 A1IU9 7 A1IU9 C9 C8 C 0 1 Y N N N N N -22.042 -28.944 -3.106 2.654 -1.347 -2.437 C9 A1IU9 8 A1IU9 C10 C9 C 0 1 Y N N N N N -22.246 -29.495 -1.852 1.587 -1.065 -1.613 C10 A1IU9 9 A1IU9 C11 C10 C 0 1 N N N N N N -21.322 -30.262 -0.949 0.124 -1.432 -1.658 C11 A1IU9 10 A1IU9 C13 C11 C 0 1 N N S N N N -21.740 -31.165 1.446 -1.905 -0.906 -0.107 C13 A1IU9 11 A1IU9 C14 C12 C 0 1 N N N N N N -21.087 -32.522 1.149 -2.033 -1.566 1.267 C14 A1IU9 12 A1IU9 C15 C13 C 0 1 Y N N N N N -22.000 -33.449 0.384 -1.550 -2.992 1.186 C15 A1IU9 13 A1IU9 C16 C14 C 0 1 Y N N N N N -23.246 -33.788 0.889 -0.221 -3.286 1.424 C16 A1IU9 14 A1IU9 C17 C15 C 0 1 Y N N N N N -24.104 -34.615 0.170 0.221 -4.594 1.350 C17 A1IU9 15 A1IU9 C18 C16 C 0 1 Y N N N N N -23.723 -35.098 -1.054 -0.666 -5.607 1.037 C18 A1IU9 16 A1IU9 C19 C17 C 0 1 Y N N N N N -22.485 -34.761 -1.569 -1.995 -5.312 0.799 C19 A1IU9 17 A1IU9 C20 C18 C 0 1 Y N N N N N -21.627 -33.943 -0.847 -2.439 -4.006 0.880 C20 A1IU9 18 A1IU9 O2 O1 O 0 1 N N N N N N -28.639 -25.490 -5.427 9.123 1.922 0.336 O2 A1IU9 19 A1IU9 N12 N1 N 0 1 N N N N N N -22.161 -30.484 0.225 -0.491 -0.817 -0.477 N12 A1IU9 20 A1IU9 C21 C19 C 0 1 N N N N N N -20.815 -30.256 2.234 -2.500 0.477 -0.057 C21 A1IU9 21 A1IU9 O22 O2 O 0 1 N N N N N N -19.779 -29.825 1.745 -1.810 1.443 -0.306 O22 A1IU9 22 A1IU9 N23 N2 N 0 1 N N N N N N -21.207 -30.018 3.493 -3.799 0.641 0.264 N23 A1IU9 23 A1IU9 C24 C20 C 0 1 N N S N N N -20.523 -29.108 4.403 -4.377 1.987 0.313 C24 A1IU9 24 A1IU9 C25 C21 C 0 1 N N N N N N -21.140 -29.260 5.790 -5.886 1.902 0.075 C25 A1IU9 25 A1IU9 C26 C22 C 0 1 N N N N N N -20.782 -28.095 6.709 -6.151 1.399 -1.345 C26 A1IU9 26 A1IU9 C27 C23 C 0 1 N N N N N N -21.878 -27.051 6.681 -7.638 1.315 -1.579 C27 A1IU9 27 A1IU9 N28 N3 N 0 1 N N N N N N -21.725 -26.058 5.819 -8.110 0.894 -2.769 N28 A1IU9 28 A1IU9 O29 O3 O 0 1 N N N N N N -22.900 -27.188 7.368 -8.409 1.628 -0.697 O29 A1IU9 29 A1IU9 C30 C24 C 0 1 N N N N N N -19.007 -29.389 4.540 -4.115 2.597 1.666 C30 A1IU9 30 A1IU9 O31 O4 O 0 1 N N N N N N -18.634 -30.585 4.615 -4.556 3.835 1.940 O31 A1IU9 31 A1IU9 O32 O5 O 0 1 N N N N N N -18.240 -28.378 4.541 -3.507 1.973 2.503 O32 A1IU9 32 A1IU9 C33 C25 C 0 1 N N N N N N -23.410 -29.967 0.100 0.458 -0.157 0.210 C33 A1IU9 33 A1IU9 O34 O6 O 0 1 N N N N N N -24.273 -30.053 0.918 0.267 0.458 1.241 O34 A1IU9 34 A1IU9 C35 C26 C 0 1 Y N N N N N -23.468 -29.330 -1.222 1.763 -0.288 -0.465 C35 A1IU9 35 A1IU9 C36 C27 C 0 1 Y N N N N N -24.494 -28.609 -1.803 3.033 0.199 -0.153 C36 A1IU9 36 A1IU9 C37 C28 C 0 1 Y N N N N N -25.577 -27.230 -5.094 5.662 1.206 0.472 C37 A1IU9 37 A1IU9 N38 N4 N 0 1 Y N N N N N -26.596 -26.588 -5.681 6.860 1.673 0.761 N38 A1IU9 38 A1IU9 H1 H1 H 0 1 N N N N N N -29.697 -25.035 -7.127 8.533 3.562 1.445 H1 A1IU9 39 A1IU9 H2 H2 H 0 1 N N N N N N -27.909 -25.022 -7.288 8.876 2.087 2.381 H2 A1IU9 40 A1IU9 H3 H3 H 0 1 N N N N N N -28.787 -26.583 -7.158 10.215 3.035 1.691 H3 A1IU9 41 A1IU9 H4 H4 H 0 1 N N N N N N -28.289 -25.682 -2.939 8.643 0.467 -1.785 H4 A1IU9 42 A1IU9 H5 H5 H 0 1 N N N N N N -26.403 -26.868 -1.873 6.415 -0.439 -2.397 H5 A1IU9 43 A1IU9 H6 H6 H 0 1 N N N N N N -22.897 -27.778 -4.676 4.746 -1.084 -2.783 H6 A1IU9 44 A1IU9 H7 H7 H 0 1 N N N N N N -21.098 -29.077 -3.613 2.506 -1.947 -3.323 H7 A1IU9 45 A1IU9 H8 H8 H 0 1 N N N N N N -21.015 -31.214 -1.407 -0.332 -1.038 -2.566 H8 A1IU9 46 A1IU9 H9 H9 H 0 1 N N N N N N -20.429 -29.672 -0.696 0.009 -2.515 -1.620 H9 A1IU9 47 A1IU9 H10 H10 H 0 1 N N N N N N -22.630 -31.354 2.064 -2.437 -1.504 -0.848 H10 A1IU9 48 A1IU9 H11 H11 H 0 1 N N N N N N -20.818 -33.000 2.102 -1.428 -1.019 1.990 H11 A1IU9 49 A1IU9 H12 H12 H 0 1 N N N N N N -20.177 -32.353 0.554 -3.076 -1.553 1.581 H12 A1IU9 50 A1IU9 H13 H13 H 0 1 N N N N N N -23.554 -33.406 1.851 0.472 -2.495 1.668 H13 A1IU9 51 A1IU9 H14 H14 H 0 1 N N N N N N -25.070 -34.876 0.577 1.260 -4.824 1.535 H14 A1IU9 52 A1IU9 H15 H15 H 0 1 N N N N N N -24.387 -35.739 -1.614 -0.320 -6.628 0.978 H15 A1IU9 53 A1IU9 H16 H16 H 0 1 N N N N N N -22.184 -35.136 -2.536 -2.688 -6.104 0.554 H16 A1IU9 54 A1IU9 H17 H17 H 0 1 N N N N N N -20.659 -33.692 -1.254 -3.477 -3.776 0.694 H17 A1IU9 55 A1IU9 H18 H18 H 0 1 N N N N N N -22.019 -30.494 3.829 -4.351 -0.131 0.463 H18 A1IU9 56 A1IU9 H19 H19 H 0 1 N N N N N N -20.659 -28.070 4.064 -3.922 2.606 -0.460 H19 A1IU9 57 A1IU9 H20 H20 H 0 1 N N N N N N -22.234 -29.308 5.688 -6.329 1.212 0.794 H20 A1IU9 58 A1IU9 H21 H21 H 0 1 N N N N N N -20.773 -30.193 6.241 -6.329 2.890 0.199 H21 A1IU9 59 A1IU9 H22 H22 H 0 1 N N N N N N -20.661 -28.467 7.737 -5.709 2.089 -2.063 H22 A1IU9 60 A1IU9 H23 H23 H 0 1 N N N N N N -19.839 -27.641 6.370 -5.708 0.411 -1.469 H23 A1IU9 61 A1IU9 H24 H24 H 0 1 N N N N N N -22.451 -25.381 5.702 -7.493 0.644 -3.475 H24 A1IU9 62 A1IU9 H25 H25 H 0 1 N N N N N N -20.883 -25.985 5.284 -9.067 0.840 -2.920 H25 A1IU9 63 A1IU9 H26 H26 H 0 1 N N N N N N -17.686 -30.619 4.673 -4.364 4.184 2.821 H26 A1IU9 64 A1IU9 H27 H27 H 0 1 N N N N N N -25.432 -28.478 -1.285 3.181 0.796 0.734 H27 A1IU9 65 A1IU9 H28 H28 H 0 1 N N N N N N -24.821 -27.676 -5.724 4.831 1.427 1.125 H28 A1IU9 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IU9 C1 O2 SING N N 1 A1IU9 N38 C37 DOUB Y N 2 A1IU9 N38 C3 SING Y N 3 A1IU9 O2 C3 SING N N 4 A1IU9 C37 C6 SING Y N 5 A1IU9 C3 C4 DOUB Y N 6 A1IU9 C6 C7 SING N N 7 A1IU9 C6 C5 DOUB Y N 8 A1IU9 C8 C9 DOUB Y N 9 A1IU9 C8 C7 SING Y N 10 A1IU9 C4 C5 SING Y N 11 A1IU9 C9 C10 SING Y N 12 A1IU9 C7 C36 DOUB Y N 13 A1IU9 C10 C35 DOUB Y N 14 A1IU9 C10 C11 SING N N 15 A1IU9 C36 C35 SING Y N 16 A1IU9 C19 C18 DOUB Y N 17 A1IU9 C19 C20 SING Y N 18 A1IU9 C35 C33 SING N N 19 A1IU9 C18 C17 SING Y N 20 A1IU9 C11 N12 SING N N 21 A1IU9 C20 C15 DOUB Y N 22 A1IU9 C33 N12 SING N N 23 A1IU9 C33 O34 DOUB N N 24 A1IU9 C17 C16 DOUB Y N 25 A1IU9 N12 C13 SING N N 26 A1IU9 C15 C16 SING Y N 27 A1IU9 C15 C14 SING N N 28 A1IU9 C14 C13 SING N N 29 A1IU9 C13 C21 SING N N 30 A1IU9 O22 C21 DOUB N N 31 A1IU9 C21 N23 SING N N 32 A1IU9 N23 C24 SING N N 33 A1IU9 C24 C30 SING N N 34 A1IU9 C24 C25 SING N N 35 A1IU9 C30 O32 DOUB N N 36 A1IU9 C30 O31 SING N N 37 A1IU9 C25 C26 SING N N 38 A1IU9 N28 C27 SING N N 39 A1IU9 C27 C26 SING N N 40 A1IU9 C27 O29 DOUB N N 41 A1IU9 C1 H1 SING N N 42 A1IU9 C1 H2 SING N N 43 A1IU9 C1 H3 SING N N 44 A1IU9 C4 H4 SING N N 45 A1IU9 C5 H5 SING N N 46 A1IU9 C8 H6 SING N N 47 A1IU9 C9 H7 SING N N 48 A1IU9 C11 H8 SING N N 49 A1IU9 C11 H9 SING N N 50 A1IU9 C13 H10 SING N N 51 A1IU9 C14 H11 SING N N 52 A1IU9 C14 H12 SING N N 53 A1IU9 C16 H13 SING N N 54 A1IU9 C17 H14 SING N N 55 A1IU9 C18 H15 SING N N 56 A1IU9 C19 H16 SING N N 57 A1IU9 C20 H17 SING N N 58 A1IU9 N23 H18 SING N N 59 A1IU9 C24 H19 SING N N 60 A1IU9 C25 H20 SING N N 61 A1IU9 C25 H21 SING N N 62 A1IU9 C26 H22 SING N N 63 A1IU9 C26 H23 SING N N 64 A1IU9 N28 H24 SING N N 65 A1IU9 N28 H25 SING N N 66 A1IU9 O31 H26 SING N N 67 A1IU9 C36 H27 SING N N 68 A1IU9 C37 H28 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IU9 InChI InChI 1.06 "InChI=1S/C28H28N4O6/c1-38-25-12-9-19(15-30-25)18-7-8-20-16-32(27(35)21(20)14-18)23(13-17-5-3-2-4-6-17)26(34)31-22(28(36)37)10-11-24(29)33/h2-9,12,14-15,22-23H,10-11,13,16H2,1H3,(H2,29,33)(H,31,34)(H,36,37)/t22-,23-/m0/s1" A1IU9 InChIKey InChI 1.06 CGCOMGPOOJVYAL-GOTSBHOMSA-N A1IU9 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cn1)c2ccc3CN([C@@H](Cc4ccccc4)C(=O)N[C@@H](CCC(N)=O)C(O)=O)C(=O)c3c2" A1IU9 SMILES CACTVS 3.385 "COc1ccc(cn1)c2ccc3CN([CH](Cc4ccccc4)C(=O)N[CH](CCC(N)=O)C(O)=O)C(=O)c3c2" A1IU9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cn1)c2ccc3c(c2)C(=O)N(C3)[C@@H](Cc4ccccc4)C(=O)N[C@@H](CCC(=O)N)C(=O)O" A1IU9 SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cn1)c2ccc3c(c2)C(=O)N(C3)C(Cc4ccccc4)C(=O)NC(CCC(=O)N)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1IU9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-5-azanyl-2-[[(2~{S})-2-[5-(6-methoxypyridin-3-yl)-3-oxidanylidene-1~{H}-isoindol-2-yl]-3-phenyl-propanoyl]amino]-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IU9 "Create component" 2024-11-26 PDBE A1IU9 "Initial release" 2025-01-15 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IU9 _pdbx_chem_comp_synonyms.name "(2~{S})-5-azanyl-2-[[(2~{S})-2-[5-(6-methoxypyridin-3-yl)-3-oxidanylidene-1~{H}-isoindol-2-yl]-3-phenyl-propanoyl]amino]-5-oxidanylidene-pentanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #