data_A1IVH # _chem_comp.id A1IVH _chem_comp.name "[5-[2-chloranyl-6-[methyl-(phenylmethyl)amino]purin-9-yl]pentoxy-oxidanyl-phosphoryl]methylphosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H26 Cl N5 O6 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-29 _chem_comp.pdbx_modified_date 2025-05-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 517.840 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IVH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HJG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IVH N3 N1 N 0 1 Y N N N N N 18.412 14.186 31.845 2.687 1.712 0.423 N3 A1IVH 1 A1IVH C4 C1 C 0 1 Y N N N N N 18.544 14.103 33.182 2.773 0.581 1.117 C4 A1IVH 2 A1IVH C5 C2 C 0 1 Y N N N N N 19.740 14.069 33.872 3.957 -0.173 1.048 C5 A1IVH 3 A1IVH C6 C3 C 0 1 Y N N N N N 20.929 14.093 33.104 5.004 0.306 0.243 C6 A1IVH 4 A1IVH C8 C4 C 0 1 N N N N N N 22.916 12.674 33.296 7.133 0.296 -0.754 C8 A1IVH 5 A1IVH C10 C5 C 0 1 Y N N N N N 22.549 10.205 33.629 8.273 -1.464 -2.122 C10 A1IVH 6 A1IVH C13 C6 C 0 1 Y N N N N N 21.018 10.662 35.878 10.498 -1.396 -0.482 C13 A1IVH 7 A1IVH C15 C7 C 0 1 N N N N N N 22.961 14.871 34.399 6.791 -0.620 1.461 C15 A1IVH 8 A1IVH C20 C8 C 0 1 N N N N N N 16.121 13.773 33.855 0.578 0.291 2.342 C20 A1IVH 9 A1IVH C21 C9 C 0 1 N N N N N N 15.211 14.746 34.599 -0.414 -0.195 1.284 C21 A1IVH 10 A1IVH C22 C10 C 0 1 N N N N N N 13.749 14.293 34.616 -1.832 0.218 1.685 C22 A1IVH 11 A1IVH C24 C11 C 0 1 N N N N N N 11.553 14.611 35.892 -4.241 0.145 1.028 C24 A1IVH 12 A1IVH C11 C12 C 0 1 Y N N N N N 21.992 9.141 34.314 9.350 -2.290 -2.384 C11 A1IVH 13 A1IVH C12 C13 C 0 1 Y N N N N N 21.225 9.367 35.439 10.462 -2.256 -1.564 C12 A1IVH 14 A1IVH C14 C14 C 0 1 Y N N N N N 21.576 11.725 35.194 9.420 -0.570 -0.220 C14 A1IVH 15 A1IVH C18 C15 C 0 1 Y N N N N N 18.183 13.905 35.315 2.597 -1.223 2.372 C18 A1IVH 16 A1IVH C2 C16 C 0 1 Y N N N N N 19.590 14.216 31.247 3.695 2.123 -0.319 C2 A1IVH 17 A1IVH C23 C17 C 0 1 N N N N N N 12.843 15.228 35.403 -2.823 -0.268 0.627 C23 A1IVH 18 A1IVH C27 C18 C 0 1 N N N N N N 9.636 17.910 37.269 -7.597 -0.909 -1.230 C27 A1IVH 19 A1IVH C9 C19 C 0 1 Y N N N N N 22.346 11.508 34.061 8.308 -0.604 -1.040 C9 A1IVH 20 A1IVH N16 N2 N 0 1 Y N N N N N 20.810 14.181 31.764 4.827 1.447 -0.414 N16 A1IVH 21 A1IVH N17 N3 N 0 1 Y N N N N N 19.489 13.945 35.248 3.782 -1.261 1.837 N17 A1IVH 22 A1IVH N19 N4 N 0 1 Y N N N N N 17.552 13.990 34.106 1.935 -0.105 1.958 N19 A1IVH 23 A1IVH N7 N5 N 0 1 N N N N N N 22.196 13.925 33.592 6.193 -0.395 0.138 N7 A1IVH 24 A1IVH O25 O1 O 0 1 N N N N N N 10.804 15.621 36.621 -5.167 -0.309 0.039 O25 A1IVH 25 A1IVH O29 O2 O 0 1 N N N N N N 9.553 18.989 39.707 -9.941 -1.175 0.287 O29 A1IVH 26 A1IVH O30 O3 O 0 1 N N N N N N 11.684 19.306 38.367 -9.660 0.839 -1.208 O30 A1IVH 27 A1IVH O31 O4 O 0 1 N N N N N N 11.111 17.038 39.320 -10.137 -1.373 -2.327 O31 A1IVH 28 A1IVH O32 O5 O 0 1 N N N N N N 10.571 17.376 34.766 -7.258 -0.565 1.431 O32 A1IVH 29 A1IVH O33 O6 O 0 1 N N N N N N 8.571 16.006 35.693 -7.045 1.531 0.041 O33 A1IVH 30 A1IVH P26 P1 P 0 1 N N N N N N 9.862 16.732 35.921 -6.753 -0.049 0.138 P26 A1IVH 31 A1IVH P28 P2 P 0 1 N N N N N N 10.571 18.345 38.773 -9.392 -0.614 -1.118 P28 A1IVH 32 A1IVH CL1 CL1 CL 0 0 N N N N N N 19.528 14.286 29.503 3.531 3.607 -1.205 CL1 A1IVH 33 A1IVH H8B H1 H 0 1 N N N N N N 22.839 12.465 32.219 7.484 1.210 -0.275 H8B A1IVH 34 A1IVH H8A H2 H 0 1 N N N N N N 23.974 12.798 33.571 6.631 0.545 -1.689 H8A A1IVH 35 A1IVH H10 H3 H 0 1 N N N N N N 23.148 10.020 32.749 7.405 -1.487 -2.765 H10 A1IVH 36 A1IVH H13 H4 H 0 1 N N N N N N 20.419 10.843 36.758 11.367 -1.369 0.158 H13 A1IVH 37 A1IVH H15A H5 H 0 0 N N N N N N 23.946 14.442 34.632 6.100 -1.194 2.079 H15A A1IVH 38 A1IVH H15C H6 H 0 0 N N N N N N 23.093 15.808 33.838 7.723 -1.173 1.349 H15C A1IVH 39 A1IVH H15B H7 H 0 0 N N N N N N 22.420 15.076 35.334 6.992 0.340 1.937 H15B A1IVH 40 A1IVH H20B H8 H 0 0 N N N N N N 15.938 13.883 32.776 0.524 1.377 2.419 H20B A1IVH 41 A1IVH H20A H9 H 0 0 N N N N N N 15.865 12.750 34.168 0.329 -0.154 3.306 H20A A1IVH 42 A1IVH H21B H10 H 0 0 N N N N N N 15.564 14.834 35.637 -0.165 0.249 0.321 H21B A1IVH 43 A1IVH H21A H11 H 0 0 N N N N N N 15.269 15.728 34.107 -0.361 -1.281 1.208 H21A A1IVH 44 A1IVH H22B H12 H 0 0 N N N N N N 13.386 14.244 33.579 -2.081 -0.227 2.648 H22B A1IVH 45 A1IVH H22A H13 H 0 0 N N N N N N 13.698 13.292 35.070 -1.885 1.304 1.762 H22A A1IVH 46 A1IVH H24B H14 H 0 0 N N N N N N 10.962 14.259 35.034 -4.490 -0.299 1.991 H24B A1IVH 47 A1IVH H24A H15 H 0 0 N N N N N N 11.776 13.763 36.557 -4.295 1.231 1.104 H24A A1IVH 48 A1IVH H11 H16 H 0 1 N N N N N N 22.157 8.131 33.968 9.322 -2.962 -3.229 H11 A1IVH 49 A1IVH H12 H17 H 0 1 N N N N N N 20.789 8.536 35.974 11.304 -2.901 -1.769 H12 A1IVH 50 A1IVH H14 H18 H 0 1 N N N N N N 21.411 12.733 35.545 9.448 0.102 0.625 H14 A1IVH 51 A1IVH H18 H19 H 0 1 N N N N N N 17.648 13.812 36.249 2.196 -1.967 3.044 H18 A1IVH 52 A1IVH H23A H20 H 0 0 N N N N N N 13.403 15.587 36.279 -2.574 0.176 -0.337 H23A A1IVH 53 A1IVH H23B H21 H 0 0 N N N N N N 12.589 16.081 34.756 -2.770 -1.354 0.550 H23B A1IVH 54 A1IVH H27B H22 H 0 0 N N N N N N 9.564 18.872 36.741 -7.225 -0.529 -2.182 H27B A1IVH 55 A1IVH H27A H23 H 0 0 N N N N N N 8.648 17.636 37.668 -7.399 -1.978 -1.164 H27A A1IVH 56 A1IVH H1 H24 H 0 1 N N N N N N 9.800 19.891 39.872 -9.799 -2.123 0.415 H1 A1IVH 57 A1IVH H2 H25 H 0 1 N N N N N N 12.061 17.058 39.309 -11.097 -1.260 -2.330 H2 A1IVH 58 A1IVH H3 H26 H 0 1 N N N N N N 8.343 16.046 34.772 -6.740 1.937 -0.782 H3 A1IVH 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IVH CL1 C2 SING N N 1 A1IVH C2 N16 DOUB Y N 2 A1IVH C2 N3 SING Y N 3 A1IVH N16 C6 SING Y N 4 A1IVH N3 C4 DOUB Y N 5 A1IVH C6 N7 SING N N 6 A1IVH C6 C5 DOUB Y N 7 A1IVH C4 C5 SING Y N 8 A1IVH C4 N19 SING Y N 9 A1IVH C8 N7 SING N N 10 A1IVH C8 C9 SING N N 11 A1IVH N7 C15 SING N N 12 A1IVH C10 C9 DOUB Y N 13 A1IVH C10 C11 SING Y N 14 A1IVH C20 N19 SING N N 15 A1IVH C20 C21 SING N N 16 A1IVH C5 N17 SING Y N 17 A1IVH C9 C14 SING Y N 18 A1IVH N19 C18 SING Y N 19 A1IVH C11 C12 DOUB Y N 20 A1IVH C21 C22 SING N N 21 A1IVH C22 C23 SING N N 22 A1IVH O32 P26 DOUB N N 23 A1IVH C14 C13 DOUB Y N 24 A1IVH N17 C18 DOUB Y N 25 A1IVH C23 C24 SING N N 26 A1IVH C12 C13 SING Y N 27 A1IVH O33 P26 SING N N 28 A1IVH C24 O25 SING N N 29 A1IVH P26 O25 SING N N 30 A1IVH P26 C27 SING N N 31 A1IVH C27 P28 SING N N 32 A1IVH O30 P28 DOUB N N 33 A1IVH P28 O31 SING N N 34 A1IVH P28 O29 SING N N 35 A1IVH C8 H8B SING N N 36 A1IVH C8 H8A SING N N 37 A1IVH C10 H10 SING N N 38 A1IVH C13 H13 SING N N 39 A1IVH C15 H15A SING N N 40 A1IVH C15 H15C SING N N 41 A1IVH C15 H15B SING N N 42 A1IVH C20 H20B SING N N 43 A1IVH C20 H20A SING N N 44 A1IVH C21 H21B SING N N 45 A1IVH C21 H21A SING N N 46 A1IVH C22 H22B SING N N 47 A1IVH C22 H22A SING N N 48 A1IVH C24 H24B SING N N 49 A1IVH C24 H24A SING N N 50 A1IVH C11 H11 SING N N 51 A1IVH C12 H12 SING N N 52 A1IVH C14 H14 SING N N 53 A1IVH C18 H18 SING N N 54 A1IVH C23 H23A SING N N 55 A1IVH C23 H23B SING N N 56 A1IVH C27 H27B SING N N 57 A1IVH C27 H27A SING N N 58 A1IVH O29 H1 SING N N 59 A1IVH O31 H2 SING N N 60 A1IVH O33 H3 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IVH InChI InChI 1.06 "InChI=1S/C19H26ClN5O6P2/c1-24(12-15-8-4-2-5-9-15)17-16-18(23-19(20)22-17)25(13-21-16)10-6-3-7-11-31-33(29,30)14-32(26,27)28/h2,4-5,8-9,13H,3,6-7,10-12,14H2,1H3,(H,29,30)(H2,26,27,28)" A1IVH InChIKey InChI 1.06 OLMZSRUZLJBCCU-UHFFFAOYSA-N A1IVH SMILES_CANONICAL CACTVS 3.385 "CN(Cc1ccccc1)c2nc(Cl)nc3n(CCCCCO[P](O)(=O)C[P](O)(O)=O)cnc23" A1IVH SMILES CACTVS 3.385 "CN(Cc1ccccc1)c2nc(Cl)nc3n(CCCCCO[P](O)(=O)C[P](O)(O)=O)cnc23" A1IVH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(Cc1ccccc1)c2c3c(nc(n2)Cl)n(cn3)CCCCCOP(=O)(CP(=O)(O)O)O" A1IVH SMILES "OpenEye OEToolkits" 2.0.7 "CN(Cc1ccccc1)c2c3c(nc(n2)Cl)n(cn3)CCCCCOP(=O)(CP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id A1IVH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[5-[2-chloranyl-6-[methyl-(phenylmethyl)amino]purin-9-yl]pentoxy-oxidanyl-phosphoryl]methylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IVH "Create component" 2024-11-29 PDBE A1IVH "Initial release" 2025-05-28 RCSB #