data_A1IVJ # _chem_comp.id A1IVJ _chem_comp.name Domperidone _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H24 Cl N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "6-chloranyl-3-[1-[3-(2-oxidanylidene-3~{H}-benzimidazol-1-yl)propyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-29 _chem_comp.pdbx_modified_date 2025-11-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.911 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IVJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HJD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IVJ C01 C1 C 0 1 N N N N N N 160.992 159.418 161.033 1.574 3.310 -0.771 C01 A1IVJ 1 A1IVJ C02 C2 C 0 1 N N N N N N 161.443 160.879 161.096 0.703 2.787 0.373 C02 A1IVJ 2 A1IVJ N03 N1 N 0 1 N N N N N N 162.097 161.201 162.289 -0.237 1.784 -0.144 N03 A1IVJ 3 A1IVJ C04 C3 C 0 1 N N N N N N 163.207 160.381 162.502 0.475 0.631 -0.709 C04 A1IVJ 4 A1IVJ C05 C4 C 0 1 N N N N N N 162.838 158.901 162.531 1.339 1.090 -1.886 C05 A1IVJ 5 A1IVJ C06 C5 C 0 1 N N N N N N 161.405 158.701 162.251 2.339 2.142 -1.398 C06 A1IVJ 6 A1IVJ N07 N2 N 0 1 N N N N N N 161.129 157.271 162.116 3.229 1.546 -0.398 N07 A1IVJ 7 A1IVJ C08 C6 C 0 1 Y N N N N N 161.276 156.309 163.225 3.876 0.318 -0.512 C08 A1IVJ 8 A1IVJ C09 C7 C 0 1 Y N N N N N 160.941 155.034 162.757 4.616 0.142 0.659 C09 A1IVJ 9 A1IVJ C10 C8 C 0 1 Y N N N N N 160.998 153.928 163.622 5.374 -1.006 0.832 C10 A1IVJ 10 A1IVJ C11 C9 C 0 1 Y N N N N N 161.389 154.101 164.949 5.393 -1.973 -0.155 C11 A1IVJ 11 A1IVJ C12 C10 C 0 1 Y N N N N N 161.728 155.381 165.423 4.659 -1.798 -1.317 C12 A1IVJ 12 A1IVJ C13 C11 C 0 1 Y N N N N N 161.669 156.479 164.564 3.901 -0.657 -1.497 C13 A1IVJ 13 A1IVJ CL14 CL1 CL 0 0 N N N N N N 161.462 152.701 166.050 6.340 -3.411 0.060 CL14 A1IVJ 14 A1IVJ N15 N3 N 0 1 N N N N N N 160.571 155.156 161.337 4.396 1.269 1.448 N15 A1IVJ 15 A1IVJ C16 C12 C 0 1 N N N N N N 160.693 156.532 160.963 3.564 2.095 0.785 C16 A1IVJ 16 A1IVJ O17 O1 O 0 1 N N N N N N 160.465 156.959 159.885 3.173 3.172 1.194 O17 A1IVJ 17 A1IVJ C18 C13 C 0 1 N N N N N N 162.361 162.384 162.376 -1.182 1.361 0.898 C18 A1IVJ 18 A1IVJ C19 C14 C 0 1 N N N N N N 161.369 163.060 163.333 -2.290 0.515 0.269 C19 A1IVJ 19 A1IVJ C20 C15 C 0 1 N N N N N N 161.327 162.411 164.715 -3.274 0.073 1.354 C20 A1IVJ 20 A1IVJ N21 N4 N 0 1 N N N N N N 161.990 163.211 165.729 -4.335 -0.737 0.752 N21 A1IVJ 21 A1IVJ C22 C16 C 0 1 Y N N N N N 161.549 163.358 167.129 -5.535 -0.255 0.235 C22 A1IVJ 22 A1IVJ C23 C17 C 0 1 Y N N N N N 160.451 162.830 167.831 -6.082 1.015 0.125 C23 A1IVJ 23 A1IVJ C24 C18 C 0 1 Y N N N N N 160.269 163.144 169.182 -7.327 1.179 -0.451 C24 A1IVJ 24 A1IVJ C25 C19 C 0 1 Y N N N N N 161.184 163.989 169.843 -8.031 0.083 -0.917 C25 A1IVJ 25 A1IVJ C26 C20 C 0 1 Y N N N N N 162.276 164.515 169.146 -7.495 -1.186 -0.811 C26 A1IVJ 26 A1IVJ C27 C21 C 0 1 Y N N N N N 162.460 164.200 167.786 -6.246 -1.361 -0.236 C27 A1IVJ 27 A1IVJ N28 N5 N 0 1 N N N N N N 163.495 164.598 166.815 -5.455 -2.481 0.009 N28 A1IVJ 28 A1IVJ C29 C22 C 0 1 N N N N N N 163.189 163.976 165.563 -4.314 -2.074 0.597 C29 A1IVJ 29 A1IVJ O30 O2 O 0 1 N N N N N N 163.814 164.082 164.561 -3.403 -2.805 0.939 O30 A1IVJ 30 A1IVJ H012 H1 H 0 0 N N N N N N 159.896 159.380 160.944 0.941 3.778 -1.525 H012 A1IVJ 31 A1IVJ H011 H2 H 0 0 N N N N N N 161.448 158.935 160.156 2.282 4.043 -0.384 H011 A1IVJ 32 A1IVJ H021 H3 H 0 0 N N N N N N 162.130 161.070 160.258 1.337 2.332 1.134 H021 A1IVJ 33 A1IVJ H022 H4 H 0 0 N N N N N N 160.557 161.523 160.998 0.145 3.614 0.813 H022 A1IVJ 34 A1IVJ H041 H6 H 0 0 N N N N N N 163.666 160.650 163.465 1.111 0.186 0.057 H041 A1IVJ 35 A1IVJ H042 H7 H 0 0 N N N N N N 163.931 160.549 161.691 -0.248 -0.108 -1.056 H042 A1IVJ 36 A1IVJ H052 H8 H 0 0 N N N N N N 163.429 158.369 161.771 1.880 0.236 -2.295 H052 A1IVJ 37 A1IVJ H051 H9 H 0 0 N N N N N N 163.069 158.494 163.526 0.703 1.522 -2.658 H051 A1IVJ 38 A1IVJ H061 H10 H 0 0 N N N N N N 160.826 159.092 163.100 2.928 2.503 -2.242 H061 A1IVJ 39 A1IVJ H101 H11 H 0 0 N N N N N N 160.739 152.944 163.259 5.947 -1.145 1.737 H101 A1IVJ 40 A1IVJ H121 H12 H 0 0 N N N N N N 162.034 155.514 166.450 4.679 -2.557 -2.085 H121 A1IVJ 41 A1IVJ H131 H13 H 0 0 N N N N N N 161.926 157.462 164.929 3.330 -0.525 -2.404 H131 A1IVJ 42 A1IVJ H151 H14 H 0 0 N N N N N N 160.284 154.408 160.738 4.778 1.433 2.324 H151 A1IVJ 43 A1IVJ H181 H15 H 0 0 N N N N N N 163.384 162.504 162.763 -0.655 0.770 1.648 H181 A1IVJ 44 A1IVJ H182 H16 H 0 0 N N N N N N 162.288 162.850 161.382 -1.620 2.240 1.370 H182 A1IVJ 45 A1IVJ H191 H17 H 0 0 N N N N N N 161.660 164.114 163.451 -2.817 1.105 -0.481 H191 A1IVJ 46 A1IVJ H192 H18 H 0 0 N N N N N N 160.364 163.005 162.890 -1.852 -0.365 -0.204 H192 A1IVJ 47 A1IVJ H202 H19 H 0 0 N N N N N N 160.276 162.273 165.007 -2.747 -0.517 2.104 H202 A1IVJ 48 A1IVJ H201 H20 H 0 0 N N N N N N 161.824 161.431 164.659 -3.712 0.953 1.827 H201 A1IVJ 49 A1IVJ H231 H21 H 0 0 N N N N N N 159.749 162.182 167.327 -5.536 1.872 0.488 H231 A1IVJ 50 A1IVJ H241 H22 H 0 0 N N N N N N 159.425 162.738 169.720 -7.753 2.168 -0.537 H241 A1IVJ 51 A1IVJ H251 H23 H 0 0 N N N N N N 161.042 164.230 170.886 -9.004 0.220 -1.366 H251 A1IVJ 52 A1IVJ H261 H24 H 0 0 N N N N N N 162.978 165.163 169.650 -8.047 -2.039 -1.176 H261 A1IVJ 53 A1IVJ H281 H25 H 0 0 N N N N N N 164.274 165.197 166.999 -5.685 -3.398 -0.210 H281 A1IVJ 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IVJ C02 C01 SING N N 1 A1IVJ N03 C02 SING N N 2 A1IVJ C05 C04 SING N N 3 A1IVJ C06 C05 SING N N 4 A1IVJ N07 C06 SING N N 5 A1IVJ C08 N07 SING N N 6 A1IVJ C09 C08 DOUB Y N 7 A1IVJ C11 C10 DOUB Y N 8 A1IVJ C13 C12 DOUB Y N 9 A1IVJ C12 C11 SING Y N 10 A1IVJ CL14 C11 SING N N 11 A1IVJ C10 C09 SING Y N 12 A1IVJ N15 C09 SING N N 13 A1IVJ C16 N15 SING N N 14 A1IVJ O17 C16 DOUB N N 15 A1IVJ C04 N03 SING N N 16 A1IVJ C18 N03 SING N N 17 A1IVJ C19 C18 SING N N 18 A1IVJ C20 C19 SING N N 19 A1IVJ N21 C20 SING N N 20 A1IVJ C22 N21 SING N N 21 A1IVJ C23 C22 DOUB Y N 22 A1IVJ C24 C23 SING Y N 23 A1IVJ C25 C24 DOUB Y N 24 A1IVJ C26 C25 SING Y N 25 A1IVJ C27 C26 DOUB Y N 26 A1IVJ N28 C27 SING N N 27 A1IVJ C29 N28 SING N N 28 A1IVJ O30 C29 DOUB N N 29 A1IVJ C01 C06 SING N N 30 A1IVJ N07 C16 SING N N 31 A1IVJ C08 C13 SING Y N 32 A1IVJ N21 C29 SING N N 33 A1IVJ C22 C27 SING Y N 34 A1IVJ C01 H012 SING N N 35 A1IVJ C01 H011 SING N N 36 A1IVJ C02 H021 SING N N 37 A1IVJ C02 H022 SING N N 38 A1IVJ C04 H041 SING N N 39 A1IVJ C04 H042 SING N N 40 A1IVJ C05 H052 SING N N 41 A1IVJ C05 H051 SING N N 42 A1IVJ C06 H061 SING N N 43 A1IVJ C10 H101 SING N N 44 A1IVJ C12 H121 SING N N 45 A1IVJ C13 H131 SING N N 46 A1IVJ N15 H151 SING N N 47 A1IVJ C18 H181 SING N N 48 A1IVJ C18 H182 SING N N 49 A1IVJ C19 H191 SING N N 50 A1IVJ C19 H192 SING N N 51 A1IVJ C20 H202 SING N N 52 A1IVJ C20 H201 SING N N 53 A1IVJ C23 H231 SING N N 54 A1IVJ C24 H241 SING N N 55 A1IVJ C25 H251 SING N N 56 A1IVJ C26 H261 SING N N 57 A1IVJ N28 H281 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IVJ InChI InChI 1.06 "InChI=1S/C22H24ClN5O2/c23-15-6-7-20-18(14-15)25-22(30)28(20)16-8-12-26(13-9-16)10-3-11-27-19-5-2-1-4-17(19)24-21(27)29/h1-2,4-7,14,16H,3,8-13H2,(H,24,29)(H,25,30)" A1IVJ InChIKey InChI 1.06 FGXWKSZFVQUSTL-UHFFFAOYSA-N A1IVJ SMILES_CANONICAL CACTVS 3.385 "Clc1ccc2N(C3CCN(CCCN4C(=O)Nc5ccccc45)CC3)C(=O)Nc2c1" A1IVJ SMILES CACTVS 3.385 "Clc1ccc2N(C3CCN(CCCN4C(=O)Nc5ccccc45)CC3)C(=O)Nc2c1" A1IVJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)NC(=O)N2CCCN3CCC(CC3)N4c5ccc(cc5NC4=O)Cl" A1IVJ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)NC(=O)N2CCCN3CCC(CC3)N4c5ccc(cc5NC4=O)Cl" # _pdbx_chem_comp_identifier.comp_id A1IVJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-chloranyl-3-[1-[3-(2-oxidanylidene-3~{H}-benzimidazol-1-yl)propyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IVJ "Create component" 2024-11-29 PDBE A1IVJ "Initial release" 2025-07-30 RCSB A1IVJ "Modify name" 2025-11-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IVJ _pdbx_chem_comp_synonyms.name "6-chloranyl-3-[1-[3-(2-oxidanylidene-3~{H}-benzimidazol-1-yl)propyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type IUPAC #