data_A1IVK # _chem_comp.id A1IVK _chem_comp.name "(2~{R})-4-[(4-bromanyl-2-ethyl-phenyl)methyl]-1-(5-chloranylpyridin-3-yl)carbonyl-~{N}-ethyl-1,4-diazepane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 Br Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-29 _chem_comp.pdbx_modified_date 2024-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.851 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IVK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HJH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IVK C4 C1 C 0 1 Y N N N N N -22.555 -3.699 -31.310 2.897 -1.545 0.086 C4 A1IVK 1 A1IVK C5 C2 C 0 1 N N N N N N -23.483 -3.492 -30.141 1.744 -2.508 0.207 C5 A1IVK 2 A1IVK C7 C3 C 0 1 N N N N N N -24.190 -4.364 -27.939 0.613 -1.301 1.941 C7 A1IVK 3 A1IVK C8 C4 C 0 1 N N N N N N -23.817 -5.035 -26.642 0.086 0.129 1.906 C8 A1IVK 4 A1IVK C10 C5 C 0 1 N N N N N N -21.959 -3.289 -28.292 -0.687 -2.600 0.355 C10 A1IVK 5 A1IVK C15 C6 C 0 1 N N N N N N -18.697 -7.943 -27.774 -3.909 -5.333 -1.888 C15 A1IVK 6 A1IVK C20 C7 C 0 1 Y N N N N N -18.314 -3.557 -25.423 -2.111 2.338 0.741 C20 A1IVK 7 A1IVK C22 C8 C 0 1 Y N N N N N -16.457 -4.898 -25.478 -3.485 4.146 0.347 C22 A1IVK 8 A1IVK C28 C9 C 0 1 Y N N N N N -20.846 -4.997 -32.426 4.879 -0.560 0.998 C28 A1IVK 9 A1IVK C1 C10 C 0 1 N N N N N N -24.910 -1.759 -32.609 0.854 0.095 -1.883 C1 A1IVK 10 A1IVK C2 C11 C 0 1 N N N N N N -23.453 -1.560 -32.405 2.012 -0.866 -2.155 C2 A1IVK 11 A1IVK C3 C12 C 0 1 Y N N N N N -22.557 -2.783 -32.373 3.025 -0.760 -1.044 C3 A1IVK 12 A1IVK N6 N1 N 0 1 N N N N N N -23.033 -4.143 -28.864 0.529 -1.773 0.584 N6 A1IVK 13 A1IVK C9 C13 C 0 1 N N N N N N -22.929 -4.214 -25.717 -1.358 0.242 2.133 C9 A1IVK 14 A1IVK C11 C14 C 0 1 N N R N N N -20.961 -3.962 -27.360 -1.898 -2.010 1.112 C11 A1IVK 15 A1IVK C12 C15 C 0 1 N N N N N N -20.239 -5.084 -28.098 -3.152 -2.616 0.535 C12 A1IVK 16 A1IVK N13 N2 N 0 1 N N N N N N -20.544 -6.338 -27.773 -3.066 -3.626 -0.353 N13 A1IVK 17 A1IVK C14 C16 C 0 1 N N N N N N -19.917 -7.478 -28.445 -4.284 -4.215 -0.913 C14 A1IVK 18 A1IVK O16 O1 O 0 1 N N N N N N -19.433 -4.802 -28.977 -4.239 -2.196 0.871 O16 A1IVK 19 A1IVK N17 N3 N 0 1 N N N N N N -21.496 -4.295 -26.026 -2.035 -0.580 1.073 N17 A1IVK 20 A1IVK C18 C17 C 0 1 N N N N N N -20.648 -4.510 -24.987 -2.757 0.013 0.103 C18 A1IVK 21 A1IVK C19 C18 C 0 1 Y N N N N N -19.167 -4.631 -25.175 -3.037 1.463 0.172 C19 A1IVK 22 A1IVK N21 N4 N 0 1 Y N N N N N -16.984 -3.676 -25.574 -2.362 3.629 0.808 N21 A1IVK 23 A1IVK C23 C19 C 0 1 Y N N N N N -17.229 -6.012 -25.228 -4.450 3.346 -0.242 C23 A1IVK 24 A1IVK CL24 CL1 CL 0 0 N N N N N N -16.483 -7.578 -25.112 -5.912 4.048 -0.863 CL24 A1IVK 25 A1IVK C25 C20 C 0 1 Y N N N N N -18.596 -5.894 -25.073 -4.236 1.981 -0.332 C25 A1IVK 26 A1IVK O26 O2 O 0 1 N N N N N N -21.051 -4.570 -23.837 -3.178 -0.643 -0.830 O26 A1IVK 27 A1IVK C27 C21 C 0 1 Y N N N N N -21.697 -4.796 -31.357 3.822 -1.443 1.108 C27 A1IVK 28 A1IVK C29 C22 C 0 1 Y N N N N N -20.860 -4.089 -33.463 5.011 0.223 -0.135 C29 A1IVK 29 A1IVK BR30 BR1 BR 0 0 N N N N N N -19.699 -4.348 -34.943 6.457 1.432 -0.286 BR30 A1IVK 30 A1IVK C31 C23 C 0 1 Y N N N N N -21.698 -2.992 -33.450 4.082 0.125 -1.155 C31 A1IVK 31 A1IVK H1 H1 H 0 1 N N N N N N -23.573 -2.410 -29.962 1.585 -3.006 -0.750 H1 A1IVK 32 A1IVK H2 H2 H 0 1 N N N N N N -24.468 -3.903 -30.407 1.971 -3.252 0.970 H2 A1IVK 33 A1IVK H3 H3 H 0 1 N N N N N N -24.639 -3.387 -27.707 1.648 -1.314 2.282 H3 A1IVK 34 A1IVK H4 H4 H 0 1 N N N N N N -24.930 -4.994 -28.454 -0.006 -1.915 2.595 H4 A1IVK 35 A1IVK H5 H5 H 0 1 N N N N N N -24.746 -5.270 -26.101 0.604 0.709 2.670 H5 A1IVK 36 A1IVK H6 H6 H 0 1 N N N N N N -23.287 -5.968 -26.882 0.319 0.561 0.932 H6 A1IVK 37 A1IVK H7 H7 H 0 1 N N N N N N -21.392 -2.862 -29.132 -0.908 -2.625 -0.712 H7 A1IVK 38 A1IVK H8 H8 H 0 1 N N N N N N -22.445 -2.479 -27.728 -0.503 -3.615 0.707 H8 A1IVK 39 A1IVK H9 H9 H 0 1 N N N N N N -18.277 -8.797 -28.326 -3.343 -6.101 -1.360 H9 A1IVK 40 A1IVK H10 H10 H 0 1 N N N N N N -17.960 -7.127 -27.746 -4.816 -5.771 -2.305 H10 A1IVK 41 A1IVK H11 H11 H 0 1 N N N N N N -18.939 -8.254 -26.747 -3.300 -4.923 -2.694 H11 A1IVK 42 A1IVK H12 H12 H 0 1 N N N N N N -18.748 -2.571 -25.498 -1.182 1.953 1.133 H12 A1IVK 43 A1IVK H13 H13 H 0 1 N N N N N N -15.391 -5.018 -25.600 -3.649 5.211 0.419 H13 A1IVK 44 A1IVK H14 H14 H 0 1 N N N N N N -20.183 -5.849 -32.449 5.602 -0.480 1.797 H14 A1IVK 45 A1IVK H15 H15 H 0 1 N N N N N N -25.418 -0.783 -32.607 1.233 1.116 -1.834 H15 A1IVK 46 A1IVK H16 H16 H 0 1 N N N N N N -25.080 -2.259 -33.574 0.122 0.018 -2.687 H16 A1IVK 47 A1IVK H17 H17 H 0 1 N N N N N N -25.312 -2.383 -31.797 0.382 -0.163 -0.936 H17 A1IVK 48 A1IVK H18 H18 H 0 1 N N N N N N -23.095 -0.916 -33.221 1.633 -1.887 -2.204 H18 A1IVK 49 A1IVK H19 H19 H 0 1 N N N N N N -23.327 -1.039 -31.444 2.484 -0.608 -3.103 H19 A1IVK 50 A1IVK H21 H21 H 0 1 N N N N N N -23.238 -3.161 -25.788 -1.610 -0.145 3.121 H21 A1IVK 51 A1IVK H22 H22 H 0 1 N N N N N N -23.080 -4.571 -24.688 -1.668 1.284 2.052 H22 A1IVK 52 A1IVK H23 H23 H 0 1 N N N N N N -20.187 -3.201 -27.180 -1.829 -2.317 2.155 H23 A1IVK 53 A1IVK H24 H24 H 0 1 N N N N N N -21.217 -6.506 -27.053 -2.197 -3.962 -0.622 H24 A1IVK 54 A1IVK H25 H25 H 0 1 N N N N N N -19.660 -7.180 -29.472 -4.850 -3.447 -1.441 H25 A1IVK 55 A1IVK H26 H26 H 0 1 N N N N N N -20.639 -8.308 -28.473 -4.893 -4.625 -0.108 H26 A1IVK 56 A1IVK H27 H27 H 0 1 N N N N N N -19.207 -6.763 -24.877 -4.975 1.333 -0.779 H27 A1IVK 57 A1IVK H28 H28 H 0 1 N N N N N N -21.698 -5.503 -30.541 3.719 -2.054 1.993 H28 A1IVK 58 A1IVK H29 H29 H 0 1 N N N N N N -21.688 -2.295 -34.275 4.185 0.735 -2.040 H29 A1IVK 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IVK BR30 C29 SING N N 1 A1IVK C29 C31 DOUB Y N 2 A1IVK C29 C28 SING Y N 3 A1IVK C31 C3 SING Y N 4 A1IVK C1 C2 SING N N 5 A1IVK C28 C27 DOUB Y N 6 A1IVK C2 C3 SING N N 7 A1IVK C3 C4 DOUB Y N 8 A1IVK C27 C4 SING Y N 9 A1IVK C4 C5 SING N N 10 A1IVK C5 N6 SING N N 11 A1IVK O16 C12 DOUB N N 12 A1IVK N6 C10 SING N N 13 A1IVK N6 C7 SING N N 14 A1IVK C14 C15 SING N N 15 A1IVK C14 N13 SING N N 16 A1IVK C10 C11 SING N N 17 A1IVK C12 N13 SING N N 18 A1IVK C12 C11 SING N N 19 A1IVK C7 C8 SING N N 20 A1IVK C11 N17 SING N N 21 A1IVK C8 C9 SING N N 22 A1IVK N17 C9 SING N N 23 A1IVK N17 C18 SING N N 24 A1IVK N21 C22 DOUB Y N 25 A1IVK N21 C20 SING Y N 26 A1IVK C22 C23 SING Y N 27 A1IVK C20 C19 DOUB Y N 28 A1IVK C23 CL24 SING N N 29 A1IVK C23 C25 DOUB Y N 30 A1IVK C19 C25 SING Y N 31 A1IVK C19 C18 SING N N 32 A1IVK C18 O26 DOUB N N 33 A1IVK C5 H1 SING N N 34 A1IVK C5 H2 SING N N 35 A1IVK C7 H3 SING N N 36 A1IVK C7 H4 SING N N 37 A1IVK C8 H5 SING N N 38 A1IVK C8 H6 SING N N 39 A1IVK C10 H7 SING N N 40 A1IVK C10 H8 SING N N 41 A1IVK C15 H9 SING N N 42 A1IVK C15 H10 SING N N 43 A1IVK C15 H11 SING N N 44 A1IVK C20 H12 SING N N 45 A1IVK C22 H13 SING N N 46 A1IVK C28 H14 SING N N 47 A1IVK C1 H15 SING N N 48 A1IVK C1 H16 SING N N 49 A1IVK C1 H17 SING N N 50 A1IVK C2 H18 SING N N 51 A1IVK C2 H19 SING N N 52 A1IVK C9 H21 SING N N 53 A1IVK C9 H22 SING N N 54 A1IVK C11 H23 SING N N 55 A1IVK N13 H24 SING N N 56 A1IVK C14 H25 SING N N 57 A1IVK C14 H26 SING N N 58 A1IVK C25 H27 SING N N 59 A1IVK C27 H28 SING N N 60 A1IVK C31 H29 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IVK InChI InChI 1.06 "InChI=1S/C23H28BrClN4O2/c1-3-16-10-19(24)7-6-17(16)14-28-8-5-9-29(21(15-28)22(30)27-4-2)23(31)18-11-20(25)13-26-12-18/h6-7,10-13,21H,3-5,8-9,14-15H2,1-2H3,(H,27,30)/t21-/m1/s1" A1IVK InChIKey InChI 1.06 YIKIBEUOQMFPOE-OAQYLSRUSA-N A1IVK SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)[C@H]1CN(CCCN1C(=O)c2cncc(Cl)c2)Cc3ccc(Br)cc3CC" A1IVK SMILES CACTVS 3.385 "CCNC(=O)[CH]1CN(CCCN1C(=O)c2cncc(Cl)c2)Cc3ccc(Br)cc3CC" A1IVK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1cc(ccc1CN2CCCN([C@H](C2)C(=O)NCC)C(=O)c3cc(cnc3)Cl)Br" A1IVK SMILES "OpenEye OEToolkits" 2.0.7 "CCc1cc(ccc1CN2CCCN(C(C2)C(=O)NCC)C(=O)c3cc(cnc3)Cl)Br" # _pdbx_chem_comp_identifier.comp_id A1IVK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-4-[(4-bromanyl-2-ethyl-phenyl)methyl]-1-(5-chloranylpyridin-3-yl)carbonyl-~{N}-ethyl-1,4-diazepane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IVK "Create component" 2024-11-29 PDBE A1IVK "Initial release" 2024-12-11 RCSB #