data_A1IW1 # _chem_comp.id A1IW1 _chem_comp.name "(3~{S})-3-[3-oxidanylidene-5-[8-(phenylcarbonyl)-2,8-diazaspiro[4.5]decan-2-yl]-1~{H}-isoindol-2-yl]piperidine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H30 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-19 _chem_comp.pdbx_modified_date 2025-11-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 486.562 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IW1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HPJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IW1 C10 C1 C 0 1 Y N N N N N 152.563 142.755 154.673 0.739 2.453 0.087 C10 A1IW1 1 A1IW1 C11 C2 C 0 1 Y N N N N N 152.410 141.377 154.833 1.416 1.251 -0.056 C11 A1IW1 2 A1IW1 C12 C3 C 0 1 Y N N N N N 153.519 140.580 155.103 2.790 1.198 0.178 C12 A1IW1 3 A1IW1 C13 C4 C 0 1 Y N N N N N 154.778 141.139 155.218 3.469 2.360 0.555 C13 A1IW1 4 A1IW1 C14 C5 C 0 1 N N N N N N 155.773 140.067 155.550 4.916 1.972 0.728 C14 A1IW1 5 A1IW1 C16 C6 C 0 1 N N S N N N 155.412 137.549 155.973 6.213 -0.275 0.465 C16 A1IW1 6 A1IW1 C17 C7 C 0 1 N N N N N N 156.193 136.846 154.874 6.041 -1.410 1.481 C17 A1IW1 7 A1IW1 C18 C8 C 0 1 N N N N N N 156.689 135.497 155.379 7.280 -2.310 1.422 C18 A1IW1 8 A1IW1 C19 C9 C 0 1 N N N N N N 157.464 135.625 156.652 7.476 -2.789 0.008 C19 A1IW1 9 A1IW1 C2 C10 C 0 1 N N N N N N 149.897 148.396 150.755 -6.619 0.142 0.128 C2 A1IW1 10 A1IW1 C22 C11 C 0 1 N N N N N N 156.204 137.624 157.262 6.467 -0.866 -0.897 C22 A1IW1 11 A1IW1 C24 C12 C 0 1 N N N N N N 153.619 139.125 155.346 3.767 0.094 0.110 C24 A1IW1 12 A1IW1 C26 C13 C 0 1 Y N N N N N 154.936 142.507 155.058 2.790 3.549 0.696 C26 A1IW1 13 A1IW1 C27 C14 C 0 1 Y N N N N N 153.840 143.308 154.790 1.427 3.601 0.463 C27 A1IW1 14 A1IW1 C28 C15 C 0 1 N N N N N N 151.577 144.967 154.020 -1.360 1.494 0.654 C28 A1IW1 15 A1IW1 C29 C16 C 0 1 N N N N N N 149.957 145.079 152.070 -3.773 2.183 0.541 C29 A1IW1 16 A1IW1 C30 C17 C 0 1 N N N N N N 150.732 146.071 151.217 -5.084 2.014 -0.234 C30 A1IW1 17 A1IW1 C31 C18 C 0 1 Y N N N N N 149.560 148.021 149.349 -6.908 -1.307 0.148 C31 A1IW1 18 A1IW1 C32 C19 C 0 1 Y N N N N N 150.288 148.545 148.287 -6.495 -2.119 -0.910 C32 A1IW1 19 A1IW1 C33 C20 C 0 1 Y N N N N N 149.973 148.201 146.984 -6.768 -3.471 -0.885 C33 A1IW1 20 A1IW1 C34 C21 C 0 1 Y N N N N N 148.934 147.335 146.726 -7.449 -4.023 0.185 C34 A1IW1 21 A1IW1 C35 C22 C 0 1 Y N N N N N 148.205 146.810 147.770 -7.862 -3.224 1.237 C35 A1IW1 22 A1IW1 C36 C23 C 0 1 Y N N N N N 148.512 147.148 149.076 -7.590 -1.872 1.228 C36 A1IW1 23 A1IW1 C4 C24 C 0 1 N N N N N N 150.650 147.732 152.994 -4.417 -0.354 -0.818 C4 A1IW1 24 A1IW1 C5 C25 C 0 1 N N N N N N 149.841 146.804 153.882 -3.111 -0.169 -0.039 C5 A1IW1 25 A1IW1 C6 C26 C 0 1 N N N N N N 150.154 145.333 153.573 -2.698 1.299 -0.083 C6 A1IW1 26 A1IW1 C7 C27 C 0 1 N N N N N N 149.279 144.379 154.418 -2.433 1.732 -1.535 C7 A1IW1 27 A1IW1 C8 C28 C 0 1 N N N N N N 150.088 143.093 154.470 -0.947 2.153 -1.560 C8 A1IW1 28 A1IW1 N15 N1 N 0 1 N N N N N N 154.929 138.870 155.609 4.996 0.538 0.427 N15 A1IW1 29 A1IW1 N21 N2 N 0 1 N N N N N N 157.232 136.741 157.406 7.073 -2.054 -1.039 N21 A1IW1 30 A1IW1 N3 N3 N 0 1 N N N N N N 150.386 147.449 151.581 -5.418 0.585 -0.293 N3 A1IW1 31 A1IW1 N9 N4 N 0 1 N N N N N N 151.474 143.560 154.416 -0.636 2.511 -0.152 N9 A1IW1 32 A1IW1 O1 O1 O 0 1 N N N N N N 149.729 149.543 151.119 -7.465 0.936 0.492 O1 A1IW1 33 A1IW1 O20 O2 O 0 1 N N N N N N 158.277 134.784 157.020 8.009 -3.860 -0.188 O20 A1IW1 34 A1IW1 O23 O3 O 0 1 N N N N N N 155.934 138.443 158.132 6.117 -0.255 -1.884 O23 A1IW1 35 A1IW1 O25 O4 O 0 1 N N N N N N 152.736 138.290 155.321 3.499 -1.053 -0.190 O25 A1IW1 36 A1IW1 H11 H1 H 0 1 N N N N N N 151.431 140.929 154.747 0.881 0.359 -0.347 H11 A1IW1 37 A1IW1 H14A H2 H 0 0 N N N N N N 156.539 139.977 154.766 5.540 2.535 0.034 H14A A1IW1 38 A1IW1 H14B H3 H 0 0 N N N N N N 156.260 140.260 156.517 5.234 2.157 1.754 H14B A1IW1 39 A1IW1 H16 H4 H 0 1 N N N N N N 154.531 136.924 156.181 7.059 0.348 0.755 H16 A1IW1 40 A1IW1 H17B H5 H 0 0 N N N N N N 157.053 137.466 154.583 5.939 -0.992 2.482 H17B A1IW1 41 A1IW1 H17A H6 H 0 0 N N N N N N 155.540 136.692 154.002 5.154 -1.992 1.232 H17A A1IW1 42 A1IW1 H18B H7 H 0 0 N N N N N N 155.822 134.843 155.555 8.156 -1.745 1.739 H18B A1IW1 43 A1IW1 H18A H8 H 0 0 N N N N N N 157.337 135.047 154.612 7.140 -3.167 2.081 H18A A1IW1 44 A1IW1 H26 H9 H 0 1 N N N N N N 155.918 142.949 155.143 3.322 4.443 0.987 H26 A1IW1 45 A1IW1 H27 H10 H 0 1 N N N N N N 153.974 144.373 154.670 0.897 4.536 0.572 H27 A1IW1 46 A1IW1 H28A H11 H 0 0 N N N N N N 152.290 145.089 153.192 -1.533 1.863 1.665 H28A A1IW1 47 A1IW1 H28B H12 H 0 0 N N N N N N 151.892 145.590 154.870 -0.799 0.560 0.682 H28B A1IW1 48 A1IW1 H29A H13 H 0 0 N N N N N N 148.887 145.167 151.833 -3.457 3.225 0.498 H29A A1IW1 49 A1IW1 H29B H14 H 0 0 N N N N N N 150.303 144.062 151.834 -3.925 1.891 1.580 H29B A1IW1 50 A1IW1 H30A H15 H 0 0 N N N N N N 150.487 145.905 150.158 -5.882 2.555 0.275 H30A A1IW1 51 A1IW1 H30B H16 H 0 0 N N N N N N 151.810 145.916 151.373 -4.964 2.403 -1.245 H30B A1IW1 52 A1IW1 H32 H17 H 0 1 N N N N N N 151.105 149.225 148.480 -5.964 -1.689 -1.746 H32 A1IW1 53 A1IW1 H33 H18 H 0 1 N N N N N N 150.545 148.614 146.166 -6.449 -4.100 -1.703 H33 A1IW1 54 A1IW1 H34 H19 H 0 1 N N N N N N 148.691 147.068 145.708 -7.661 -5.082 0.199 H34 A1IW1 55 A1IW1 H35 H20 H 0 1 N N N N N N 147.390 146.131 147.568 -8.394 -3.661 2.069 H35 A1IW1 56 A1IW1 H36 H21 H 0 1 N N N N N N 147.935 146.732 149.888 -7.912 -1.249 2.049 H36 A1IW1 57 A1IW1 H4A H22 H 0 1 N N N N N N 151.721 147.586 153.198 -4.245 -0.151 -1.875 H4A A1IW1 58 A1IW1 H4B H23 H 0 1 N N N N N N 150.374 148.774 153.212 -4.773 -1.378 -0.696 H4B A1IW1 59 A1IW1 H5B H24 H 0 1 N N N N N N 150.085 147.010 154.935 -3.259 -0.473 0.997 H5B A1IW1 60 A1IW1 H5A H25 H 0 1 N N N N N N 148.770 146.987 153.712 -2.329 -0.780 -0.489 H5A A1IW1 61 A1IW1 H7A H26 H 0 1 N N N N N N 149.122 144.784 155.429 -2.602 0.897 -2.216 H7A A1IW1 62 A1IW1 H7B H27 H 0 1 N N N N N N 148.305 144.210 153.935 -3.071 2.575 -1.802 H7B A1IW1 63 A1IW1 H8B H28 H 0 1 N N N N N N 149.857 142.448 153.610 -0.322 1.323 -1.888 H8B A1IW1 64 A1IW1 H8A H29 H 0 1 N N N N N N 149.894 142.544 155.403 -0.807 3.014 -2.213 H8A A1IW1 65 A1IW1 H21 H30 H 0 1 N N N N N N 157.885 136.929 158.140 7.225 -2.395 -1.934 H21 A1IW1 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IW1 C34 C33 DOUB Y N 1 A1IW1 C34 C35 SING Y N 2 A1IW1 C33 C32 SING Y N 3 A1IW1 C35 C36 DOUB Y N 4 A1IW1 C32 C31 DOUB Y N 5 A1IW1 C36 C31 SING Y N 6 A1IW1 C31 C2 SING N N 7 A1IW1 C2 O1 DOUB N N 8 A1IW1 C2 N3 SING N N 9 A1IW1 C30 N3 SING N N 10 A1IW1 C30 C29 SING N N 11 A1IW1 N3 C4 SING N N 12 A1IW1 C29 C6 SING N N 13 A1IW1 C4 C5 SING N N 14 A1IW1 C6 C5 SING N N 15 A1IW1 C6 C28 SING N N 16 A1IW1 C6 C7 SING N N 17 A1IW1 C28 N9 SING N N 18 A1IW1 N9 C8 SING N N 19 A1IW1 N9 C10 SING N N 20 A1IW1 C7 C8 SING N N 21 A1IW1 C10 C27 DOUB Y N 22 A1IW1 C10 C11 SING Y N 23 A1IW1 C27 C26 SING Y N 24 A1IW1 C11 C12 DOUB Y N 25 A1IW1 C17 C18 SING N N 26 A1IW1 C17 C16 SING N N 27 A1IW1 C26 C13 DOUB Y N 28 A1IW1 C12 C13 SING Y N 29 A1IW1 C12 C24 SING N N 30 A1IW1 C13 C14 SING N N 31 A1IW1 O25 C24 DOUB N N 32 A1IW1 C24 N15 SING N N 33 A1IW1 C18 C19 SING N N 34 A1IW1 C14 N15 SING N N 35 A1IW1 N15 C16 SING N N 36 A1IW1 C16 C22 SING N N 37 A1IW1 C19 O20 DOUB N N 38 A1IW1 C19 N21 SING N N 39 A1IW1 C22 N21 SING N N 40 A1IW1 C22 O23 DOUB N N 41 A1IW1 C11 H11 SING N N 42 A1IW1 C14 H14A SING N N 43 A1IW1 C14 H14B SING N N 44 A1IW1 C16 H16 SING N N 45 A1IW1 C17 H17B SING N N 46 A1IW1 C17 H17A SING N N 47 A1IW1 C18 H18B SING N N 48 A1IW1 C18 H18A SING N N 49 A1IW1 C26 H26 SING N N 50 A1IW1 C27 H27 SING N N 51 A1IW1 C28 H28A SING N N 52 A1IW1 C28 H28B SING N N 53 A1IW1 C29 H29A SING N N 54 A1IW1 C29 H29B SING N N 55 A1IW1 C30 H30A SING N N 56 A1IW1 C30 H30B SING N N 57 A1IW1 C32 H32 SING N N 58 A1IW1 C33 H33 SING N N 59 A1IW1 C34 H34 SING N N 60 A1IW1 C35 H35 SING N N 61 A1IW1 C36 H36 SING N N 62 A1IW1 C4 H4A SING N N 63 A1IW1 C4 H4B SING N N 64 A1IW1 C5 H5B SING N N 65 A1IW1 C5 H5A SING N N 66 A1IW1 C7 H7A SING N N 67 A1IW1 C7 H7B SING N N 68 A1IW1 C8 H8B SING N N 69 A1IW1 C8 H8A SING N N 70 A1IW1 N21 H21 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IW1 InChI InChI 1.06 "InChI=1S/C28H30N4O4/c33-24-9-8-23(25(34)29-24)32-17-20-6-7-21(16-22(20)27(32)36)31-15-12-28(18-31)10-13-30(14-11-28)26(35)19-4-2-1-3-5-19/h1-7,16,23H,8-15,17-18H2,(H,29,33,34)/t23-/m0/s1" A1IW1 InChIKey InChI 1.06 MMJAYQPOAOAOHR-QHCPKHFHSA-N A1IW1 SMILES_CANONICAL CACTVS 3.385 "O=C1CC[C@H](N2Cc3ccc(cc3C2=O)N4CCC5(CCN(CC5)C(=O)c6ccccc6)C4)C(=O)N1" A1IW1 SMILES CACTVS 3.385 "O=C1CC[CH](N2Cc3ccc(cc3C2=O)N4CCC5(CCN(CC5)C(=O)c6ccccc6)C4)C(=O)N1" A1IW1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(=O)N2CCC3(CC2)CCN(C3)c4ccc5c(c4)C(=O)N(C5)[C@H]6CCC(=O)NC6=O" A1IW1 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(=O)N2CCC3(CC2)CCN(C3)c4ccc5c(c4)C(=O)N(C5)C6CCC(=O)NC6=O" # _pdbx_chem_comp_identifier.comp_id A1IW1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-3-[3-oxidanylidene-5-[8-(phenylcarbonyl)-2,8-diazaspiro[4.5]decan-2-yl]-1~{H}-isoindol-2-yl]piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IW1 "Create component" 2024-12-19 PDBE A1IW1 "Initial release" 2025-12-03 RCSB #