data_A1IWO # _chem_comp.id A1IWO _chem_comp.name "1-[5-chloranyl-4-[(3~{R})-pyrrolidin-3-yl]oxy-pyrimidin-2-yl]benzimidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H14 Cl N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-18 _chem_comp.pdbx_modified_date 2025-03-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 315.758 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IWO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HRC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IWO N1 N1 N 0 1 Y N N N N N 50.401 -19.738 -1.341 -0.531 -0.042 -0.117 N1 A1IWO 1 A1IWO N3 N2 N 0 1 Y N N N N N 51.266 -21.897 -1.268 1.766 -0.504 -0.082 N3 A1IWO 2 A1IWO C4 C1 C 0 1 N N R N N N 48.462 -18.018 -2.165 -2.998 -1.080 -0.264 C4 A1IWO 3 A1IWO C5 C2 C 0 1 N N N N N N 48.980 -17.940 -3.598 -4.284 -1.420 -1.052 C5 A1IWO 4 A1IWO C6 C3 C 0 1 N N N N N N 48.845 -16.443 -3.956 -4.899 -2.625 -0.317 C6 A1IWO 5 A1IWO C7 C4 C 0 1 N N N N N N 47.351 -16.935 -2.142 -3.269 -1.705 1.127 C7 A1IWO 6 A1IWO C8 C5 C 0 1 Y N N N N N 52.027 -22.995 -0.752 1.660 -1.861 -0.180 C8 A1IWO 7 A1IWO C10 C6 C 0 1 Y N N N N N 50.624 -24.503 -3.623 5.186 -1.453 -0.038 C10 A1IWO 8 A1IWO C13 C7 C 0 1 Y N N N N N 49.765 -21.791 -3.379 3.835 0.978 0.096 C13 A1IWO 9 A1IWO CL CL1 CL 0 0 N N N N N N 50.936 -16.685 1.121 -2.616 3.308 0.058 CL A1IWO 10 A1IWO C C8 C 0 1 Y N N N N N 51.030 -18.216 0.411 -1.308 2.168 0.016 C A1IWO 11 A1IWO C3 C9 C 0 1 Y N N N N N 50.331 -18.533 -0.758 -1.557 0.799 -0.088 C3 A1IWO 12 A1IWO O O1 O 0 1 N N N N N N 49.556 -17.594 -1.372 -2.829 0.335 -0.159 O A1IWO 13 A1IWO N2 N3 N 0 1 N N N N N N 47.761 -15.877 -3.110 -3.991 -2.961 0.801 N2 A1IWO 14 A1IWO C2 C10 C 0 1 Y N N N N N 51.201 -20.645 -0.689 0.712 0.407 -0.049 C2 A1IWO 15 A1IWO N N4 N 0 1 Y N N N N N 51.926 -20.438 0.456 0.980 1.699 0.050 N A1IWO 16 A1IWO C1 C11 C 0 1 Y N N N N N 51.820 -19.221 0.983 0.005 2.595 0.085 C1 A1IWO 17 A1IWO C14 C12 C 0 1 Y N N N N N 50.631 -22.365 -2.445 3.115 -0.202 -0.015 C14 A1IWO 18 A1IWO C9 C13 C 0 1 Y N N N N N 51.054 -23.715 -2.568 3.790 -1.432 -0.083 C9 A1IWO 19 A1IWO N4 N5 N 0 1 Y N N N N N 51.917 -24.073 -1.507 2.843 -2.401 -0.183 N4 A1IWO 20 A1IWO C12 C14 C 0 1 Y N N N N N 49.352 -22.594 -4.422 5.213 0.940 0.139 C12 A1IWO 21 A1IWO C11 C15 C 0 1 Y N N N N N 49.769 -23.917 -4.544 5.884 -0.272 0.072 C11 A1IWO 22 A1IWO H H1 H 0 1 N N N N N N 48.075 -19.015 -1.910 -2.126 -1.537 -0.733 H A1IWO 23 A1IWO H2 H2 H 0 1 N N N N N N 50.030 -18.263 -3.654 -4.972 -0.575 -1.035 H2 A1IWO 24 A1IWO H3 H3 H 0 1 N N N N N N 48.369 -18.561 -4.270 -4.038 -1.688 -2.079 H3 A1IWO 25 A1IWO H4 H4 H 0 1 N N N N N N 49.792 -15.921 -3.752 -5.883 -2.361 0.070 H4 A1IWO 26 A1IWO H5 H5 H 0 1 N N N N N N 48.587 -16.333 -5.020 -4.980 -3.473 -0.997 H5 A1IWO 27 A1IWO H7 H6 H 0 1 N N N N N N 47.258 -16.509 -1.132 -2.332 -1.922 1.640 H7 A1IWO 28 A1IWO H8 H7 H 0 1 N N N N N N 46.389 -17.373 -2.445 -3.892 -1.045 1.731 H8 A1IWO 29 A1IWO H9 H8 H 0 1 N N N N N N 52.621 -22.947 0.149 0.730 -2.406 -0.246 H9 A1IWO 30 A1IWO H10 H9 H 0 1 N N N N N N 50.941 -25.530 -3.724 5.716 -2.393 -0.090 H10 A1IWO 31 A1IWO H13 H10 H 0 1 N N N N N N 49.434 -20.767 -3.289 3.317 1.925 0.149 H13 A1IWO 32 A1IWO H6 H11 H 0 1 N N N N N N 48.096 -15.074 -2.617 -4.509 -3.298 1.599 H6 A1IWO 33 A1IWO H1 H13 H 0 1 N N N N N N 52.365 -18.999 1.888 0.234 3.648 0.165 H1 A1IWO 34 A1IWO H12 H14 H 0 1 N N N N N N 48.685 -22.184 -5.166 5.772 1.859 0.225 H12 A1IWO 35 A1IWO H11 H15 H 0 1 N N N N N N 49.416 -24.503 -5.380 6.964 -0.289 0.106 H11 A1IWO 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IWO C CL SING N N 1 A1IWO C C1 DOUB Y N 2 A1IWO C1 N SING Y N 3 A1IWO N C2 DOUB Y N 4 A1IWO C2 N1 SING Y N 5 A1IWO N1 C3 DOUB Y N 6 A1IWO C3 C SING Y N 7 A1IWO O C3 SING N N 8 A1IWO C4 O SING N N 9 A1IWO C4 C5 SING N N 10 A1IWO C5 C6 SING N N 11 A1IWO C6 N2 SING N N 12 A1IWO N2 C7 SING N N 13 A1IWO C7 C4 SING N N 14 A1IWO N3 C2 SING N N 15 A1IWO N3 C8 SING Y N 16 A1IWO C8 N4 DOUB Y N 17 A1IWO N4 C9 SING Y N 18 A1IWO C9 C10 DOUB Y N 19 A1IWO C10 C11 SING Y N 20 A1IWO C11 C12 DOUB Y N 21 A1IWO C12 C13 SING Y N 22 A1IWO C13 C14 DOUB Y N 23 A1IWO C14 N3 SING Y N 24 A1IWO C9 C14 SING Y N 25 A1IWO C4 H SING N N 26 A1IWO C5 H2 SING N N 27 A1IWO C5 H3 SING N N 28 A1IWO C6 H4 SING N N 29 A1IWO C6 H5 SING N N 30 A1IWO C7 H7 SING N N 31 A1IWO C7 H8 SING N N 32 A1IWO C8 H9 SING N N 33 A1IWO C10 H10 SING N N 34 A1IWO C13 H13 SING N N 35 A1IWO N2 H6 SING N N 36 A1IWO C1 H1 SING N N 37 A1IWO C12 H12 SING N N 38 A1IWO C11 H11 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IWO InChI InChI 1.06 "InChI=1S/C15H14ClN5O/c16-11-8-18-15(20-14(11)22-10-5-6-17-7-10)21-9-19-12-3-1-2-4-13(12)21/h1-4,8-10,17H,5-7H2" A1IWO InChIKey InChI 1.06 RTLRGXRMFWELCG-UHFFFAOYSA-N A1IWO SMILES_CANONICAL CACTVS 3.385 "Clc1cnc(nc1O[C@@H]2CCNC2)n3cnc4ccccc34" A1IWO SMILES CACTVS 3.385 "Clc1cnc(nc1O[CH]2CCNC2)n3cnc4ccccc34" A1IWO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)ncn2c3ncc(c(n3)O[C@@H]4CCNC4)Cl" A1IWO SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)ncn2c3ncc(c(n3)OC4CCNC4)Cl" # _pdbx_chem_comp_identifier.comp_id A1IWO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[5-chloranyl-4-[(3~{R})-pyrrolidin-3-yl]oxy-pyrimidin-2-yl]benzimidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IWO "Create component" 2024-12-18 PDBE A1IWO "Initial release" 2025-03-12 RCSB #