data_A1IXJ # _chem_comp.id A1IXJ _chem_comp.name "[3-(phenylmethyl)-1,3-benzoselenazol-2-ylidene]ruthenium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H11 N Ru Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-20 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.274 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IXJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HTI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IXJ N3 N1 N 0 1 N N N N N N -2.831 -25.814 -9.123 0.220 0.274 -0.674 N3 A1IXJ 1 A1IXJ C4 C1 C 0 1 N N N N N N -1.599 -25.570 -8.622 0.124 -1.009 -0.190 C4 A1IXJ 2 A1IXJ C5 C2 C 0 1 Y N N N N N -2.982 -26.281 -10.443 1.321 1.086 -0.509 C5 A1IXJ 3 A1IXJ C6 C3 C 0 1 Y N N N N N -1.788 -26.406 -11.139 2.432 0.597 0.193 C6 A1IXJ 4 A1IXJ C7 C4 C 0 1 N N N N N N -3.998 -25.587 -8.272 -0.922 0.811 -1.418 C7 A1IXJ 5 A1IXJ C8 C5 C 0 1 Y N N N N N -4.685 -26.862 -7.806 -1.868 1.493 -0.464 C8 A1IXJ 6 A1IXJ C10 C6 C 0 1 Y N N N N N -4.163 -27.144 -12.357 2.580 3.144 -0.787 C10 A1IXJ 7 A1IXJ C11 C7 C 0 1 Y N N N N N -2.966 -27.273 -13.048 3.654 2.622 -0.086 C11 A1IXJ 8 A1IXJ C9 C8 C 0 1 Y N N N N N -4.171 -26.672 -11.040 1.443 2.407 -0.998 C9 A1IXJ 9 A1IXJ SE2 SE1 SE 0 0 N N N N N N -0.352 -25.915 -10.063 1.884 -1.232 0.697 SE2 A1IXJ 10 A1IXJ C12 C9 C 0 1 Y N N N N N -1.776 -26.905 -12.456 3.564 1.328 0.405 C12 A1IXJ 11 A1IXJ C13 C10 C 0 1 Y N N N N N -4.075 -28.109 -7.971 -1.715 2.838 -0.182 C13 A1IXJ 12 A1IXJ C14 C11 C 0 1 Y N N N N N -4.705 -29.276 -7.570 -2.582 3.463 0.694 C14 A1IXJ 13 A1IXJ C15 C12 C 0 1 Y N N N N N -5.964 -29.223 -6.998 -3.603 2.745 1.287 C15 A1IXJ 14 A1IXJ C16 C13 C 0 1 Y N N N N N -6.586 -28.005 -6.827 -3.757 1.400 1.005 C16 A1IXJ 15 A1IXJ C17 C14 C 0 1 Y N N N N N -5.952 -26.832 -7.228 -2.892 0.775 0.126 C17 A1IXJ 16 A1IXJ RU1 RU1 RU 0 0 N N N N N N -1.068 -24.958 -6.851 -1.188 -2.134 -0.320 RU1 A1IXJ 17 A1IXJ H7B H1 H 0 1 N N N N N N -3.674 -25.025 -7.384 -0.569 1.531 -2.156 H7B A1IXJ 18 A1IXJ H7A H2 H 0 1 N N N N N N -4.727 -24.989 -8.838 -1.441 -0.003 -1.924 H7A A1IXJ 19 A1IXJ H10 H3 H 0 1 N N N N N N -5.093 -27.409 -12.838 2.639 4.150 -1.174 H10 A1IXJ 20 A1IXJ H11 H4 H 0 1 N N N N N N -2.967 -27.664 -14.055 4.544 3.212 0.075 H11 A1IXJ 21 A1IXJ H9 H5 H 0 1 N N N N N N -5.099 -26.612 -10.491 0.624 2.846 -1.548 H9 A1IXJ 22 A1IXJ H12 H6 H 0 1 N N N N N N -0.845 -26.998 -12.996 4.389 0.900 0.956 H12 A1IXJ 23 A1IXJ H13 H7 H 0 1 N N N N N N -3.094 -28.164 -8.420 -0.917 3.399 -0.645 H13 A1IXJ 24 A1IXJ H14 H8 H 0 1 N N N N N N -4.213 -30.228 -7.704 -2.462 4.514 0.915 H14 A1IXJ 25 A1IXJ H15 H9 H 0 1 N N N N N N -6.457 -30.132 -6.687 -4.281 3.233 1.972 H15 A1IXJ 26 A1IXJ H16 H10 H 0 1 N N N N N N -7.568 -27.960 -6.381 -4.555 0.839 1.468 H16 A1IXJ 27 A1IXJ H17 H11 H 0 1 N N N N N N -6.450 -25.884 -7.089 -3.012 -0.275 -0.095 H17 A1IXJ 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IXJ C4 RU1 DOUB N N 1 A1IXJ SE2 C4 SING N N 2 A1IXJ SE2 C6 SING N N 3 A1IXJ N3 C4 SING N N 4 A1IXJ N3 C5 SING N N 5 A1IXJ N3 C7 SING N N 6 A1IXJ C5 C6 DOUB Y N 7 A1IXJ C7 C8 SING N N 8 A1IXJ C5 C9 SING Y N 9 A1IXJ C9 C10 DOUB Y N 10 A1IXJ C10 C11 SING Y N 11 A1IXJ C11 C12 DOUB Y N 12 A1IXJ C12 C6 SING Y N 13 A1IXJ C8 C13 DOUB Y N 14 A1IXJ C13 C14 SING Y N 15 A1IXJ C14 C15 DOUB Y N 16 A1IXJ C15 C16 SING Y N 17 A1IXJ C16 C17 DOUB Y N 18 A1IXJ C17 C8 SING Y N 19 A1IXJ C7 H7B SING N N 20 A1IXJ C7 H7A SING N N 21 A1IXJ C10 H10 SING N N 22 A1IXJ C11 H11 SING N N 23 A1IXJ C9 H9 SING N N 24 A1IXJ C12 H12 SING N N 25 A1IXJ C13 H13 SING N N 26 A1IXJ C14 H14 SING N N 27 A1IXJ C15 H15 SING N N 28 A1IXJ C16 H16 SING N N 29 A1IXJ C17 H17 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IXJ InChI InChI 1.06 "InChI=1S/C14H11NSe.Ru/c1-2-6-12(7-3-1)10-15-11-16-14-9-5-4-8-13(14)15;/h1-9H,10H2;" A1IXJ InChIKey InChI 1.06 BGMZFMPODPDLFN-UHFFFAOYSA-N A1IXJ SMILES_CANONICAL CACTVS 3.385 "[Ru]=C1[Se]c2ccccc2N1Cc3ccccc3" A1IXJ SMILES CACTVS 3.385 "[Ru]=C1[Se]c2ccccc2N1Cc3ccccc3" A1IXJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2c3ccccc3[Se]C2=[Ru]" A1IXJ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2c3ccccc3[Se]C2=[Ru]" # _pdbx_chem_comp_identifier.comp_id A1IXJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[3-(phenylmethyl)-1,3-benzoselenazol-2-ylidene]ruthenium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IXJ "Create component" 2024-12-20 PDBE A1IXJ "Initial release" 2026-01-14 RCSB #