data_A1IXV # _chem_comp.id A1IXV _chem_comp.name "2-chloranyl-~{N}-(2-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-1,8-naphthyridin-4-yl)ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 Cl N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-03 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 241.674 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IXV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HU8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IXV C02 C1 C 0 1 N N N N N N -5.304 12.590 29.839 2.502 -1.832 -0.157 C02 A1IXV 1 A1IXV C03 C2 C 0 1 N N N N N N -3.854 12.247 29.486 1.189 -1.996 0.285 C03 A1IXV 2 A1IXV C04 C3 C 0 1 N N N N N N -2.899 11.837 30.565 0.405 -0.874 0.509 C04 A1IXV 3 A1IXV C06 C4 C 0 1 N N N N N N -0.885 12.089 29.054 -1.922 -0.552 0.188 C06 A1IXV 4 A1IXV C07 C5 C 0 1 N N N N N N 0.484 11.530 28.656 -3.334 -0.593 0.713 C07 A1IXV 5 A1IXV C09 C6 C 0 1 N N N N N N -3.348 11.677 31.969 0.950 0.403 0.289 C09 A1IXV 6 A1IXV C10 C7 C 0 1 N N N N N N -4.820 12.017 32.310 2.238 0.517 -0.140 C10 A1IXV 7 A1IXV C12 C8 C 0 1 N N N N N N -4.200 11.414 34.708 1.950 2.942 -0.428 C12 A1IXV 8 A1IXV C13 C9 C 0 1 N N N N N N -2.894 11.734 34.394 0.944 2.857 0.728 C13 A1IXV 9 A1IXV C14 C10 C 0 1 N N N N N N -2.467 11.255 32.951 0.082 1.609 0.532 C14 A1IXV 10 A1IXV N05 N1 N 0 1 N N N N N N -1.571 11.475 30.163 -0.907 -1.011 0.947 N05 A1IXV 11 A1IXV N11 N2 N 0 1 N N N N N N -5.323 11.923 33.627 2.810 1.753 -0.359 N11 A1IXV 12 A1IXV N15 N3 N 0 1 N N N N N N -5.743 12.463 31.242 2.998 -0.599 -0.356 N15 A1IXV 13 A1IXV O01 O1 O 0 1 N N N N N N -6.070 12.946 29.013 3.204 -2.812 -0.358 O01 A1IXV 14 A1IXV O08 O2 O 0 1 N N N N N N -1.358 13.010 28.479 -1.699 -0.108 -0.918 O08 A1IXV 15 A1IXV H031 H1 H 0 0 N N N N N N -3.520 12.301 28.460 0.788 -2.985 0.451 H031 A1IXV 16 A1IXV H072 H2 H 0 0 N N N N N N 1.104 12.320 28.208 -3.611 -1.625 0.929 H072 A1IXV 17 A1IXV H073 H3 H 0 0 N N N N N N 0.998 11.115 29.535 -3.399 -0.001 1.626 H073 A1IXV 18 A1IXV H121 H5 H 0 0 N N N N N N -4.436 11.866 35.683 1.420 2.959 -1.380 H121 A1IXV 19 A1IXV H122 H6 H 0 0 N N N N N N -4.273 10.319 34.785 2.556 3.842 -0.326 H122 A1IXV 20 A1IXV H132 H7 H 0 0 N N N N N N -2.779 12.827 34.448 1.478 2.788 1.675 H132 A1IXV 21 A1IXV H131 H8 H 0 0 N N N N N N -2.230 11.258 35.131 0.312 3.745 0.728 H131 A1IXV 22 A1IXV H141 H9 H 0 0 N N N N N N -1.469 11.659 32.726 -0.577 1.757 -0.324 H141 A1IXV 23 A1IXV H142 H10 H 0 0 N N N N N N -2.428 10.156 32.941 -0.522 1.445 1.424 H142 A1IXV 24 A1IXV H051 H11 H 0 0 N N N N N N -1.097 10.761 30.678 -1.092 -1.436 1.799 H051 A1IXV 25 A1IXV H111 H12 H 0 0 N N N N N N -6.085 11.276 33.631 3.770 1.837 -0.466 H111 A1IXV 26 A1IXV H151 H13 H 0 0 N N N N N N -6.689 12.684 31.478 3.913 -0.499 -0.663 H151 A1IXV 27 A1IXV CL1 CL1 CL 0 0 N Y N N N N 0.162 10.252 27.470 -4.455 0.084 -0.525 CL1 A1IXV 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IXV C02 O01 DOUB N N 1 A1IXV C03 C02 SING N N 2 A1IXV C04 C03 DOUB N N 3 A1IXV C06 N05 SING N N 4 A1IXV C07 C06 SING N N 5 A1IXV O08 C06 DOUB N N 6 A1IXV N05 C04 SING N N 7 A1IXV C09 C04 SING N N 8 A1IXV C10 C09 DOUB N N 9 A1IXV C12 N11 SING N N 10 A1IXV C13 C12 SING N N 11 A1IXV C14 C13 SING N N 12 A1IXV N11 C10 SING N N 13 A1IXV N15 C10 SING N N 14 A1IXV C02 N15 SING N N 15 A1IXV C09 C14 SING N N 16 A1IXV C03 H031 SING N N 17 A1IXV C07 H072 SING N N 18 A1IXV C07 H073 SING N N 19 A1IXV C12 H121 SING N N 20 A1IXV C12 H122 SING N N 21 A1IXV C13 H132 SING N N 22 A1IXV C13 H131 SING N N 23 A1IXV C14 H141 SING N N 24 A1IXV C14 H142 SING N N 25 A1IXV N05 H051 SING N N 26 A1IXV N11 H111 SING N N 27 A1IXV N15 H151 SING N N 28 A1IXV C07 CL1 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IXV InChI InChI 1.06 "InChI=1S/C10H12ClN3O2/c11-5-9(16)13-7-4-8(15)14-10-6(7)2-1-3-12-10/h4H,1-3,5H2,(H3,12,13,14,15,16)" A1IXV InChIKey InChI 1.06 RKWRPDDLRMOMHG-UHFFFAOYSA-N A1IXV SMILES_CANONICAL CACTVS 3.385 "ClCC(=O)NC1=CC(=O)NC2=C1CCCN2" A1IXV SMILES CACTVS 3.385 "ClCC(=O)NC1=CC(=O)NC2=C1CCCN2" A1IXV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CC2=C(NC1)NC(=O)C=C2NC(=O)CCl" A1IXV SMILES "OpenEye OEToolkits" 2.0.7 "C1CC2=C(NC1)NC(=O)C=C2NC(=O)CCl" # _pdbx_chem_comp_identifier.comp_id A1IXV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-chloranyl-~{N}-(2-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-1,8-naphthyridin-4-yl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IXV "Create component" 2025-01-03 PDBE A1IXV "Modify PCM" 2025-01-03 PDBE A1IXV "Initial release" 2026-01-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IXV _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C07 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #