data_A1IXW # _chem_comp.id A1IXW _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)-6-propan-2-yl-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 6-isopropyl-UMP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-03 _chem_comp.pdbx_modified_date 2026-07-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 366.261 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IXW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HVT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IXW N1 N1 N 0 1 N N N N N N 14.696 9.978 36.997 2.042 0.149 0.149 N1 A1IXW 1 A1IXW C2 C1 C 0 1 N N N N N N 15.620 10.130 37.994 1.927 0.982 1.199 C2 A1IXW 2 A1IXW C3 C2 C 0 1 N N N N N N 13.942 10.722 33.951 4.739 -0.942 -2.178 C3 A1IXW 3 A1IXW C4 C3 C 0 1 N N N N N N 17.405 9.559 36.564 3.980 1.974 0.691 C4 A1IXW 4 A1IXW C5 C4 C 0 1 N N N N N N 16.557 9.312 35.495 4.116 1.100 -0.415 C5 A1IXW 5 A1IXW C6 C5 C 0 1 N N N N N N 15.202 9.508 35.720 3.140 0.201 -0.665 C6 A1IXW 6 A1IXW P P1 P 0 1 N N N N N N 12.226 13.327 42.207 -4.627 0.845 -0.394 P A1IXW 7 A1IXW O1P O1 O 0 1 N N N N N N 10.933 13.168 42.953 -4.480 2.059 0.653 O1P A1IXW 8 A1IXW O2P O2 O 0 1 N N N N N N 12.535 14.769 41.874 -5.648 -0.108 0.095 O2P A1IXW 9 A1IXW O3P O3 O 0 1 N N N N N N 13.380 12.583 42.837 -5.076 1.424 -1.828 O3P A1IXW 10 A1IXW "O5'" O4 O 0 1 N N N N N N 11.869 12.624 40.814 -3.214 0.088 -0.540 "O5'" A1IXW 11 A1IXW "C5'" C6 C 0 1 N N N N N N 12.865 12.363 39.836 -2.598 -0.625 0.535 "C5'" A1IXW 12 A1IXW "C4'" C7 C 0 1 N N R N N N 12.096 11.842 38.609 -1.271 -1.220 0.058 "C4'" A1IXW 13 A1IXW "C3'" C8 C 0 1 N N S N N N 11.431 10.484 38.808 -0.648 -2.099 1.165 "C3'" A1IXW 14 A1IXW "O3'" O5 O 0 1 N N N N N N 10.200 10.427 38.070 -0.939 -3.479 0.932 "O3'" A1IXW 15 A1IXW "C2'" C9 C 0 1 N N R N N N 12.501 9.530 38.334 0.870 -1.835 1.044 "C2'" A1IXW 16 A1IXW "O2'" O6 O 0 1 N N N N N N 11.857 8.332 37.833 1.566 -3.044 0.734 "O2'" A1IXW 17 A1IXW "O4'" O7 O 0 1 N N N N N N 13.076 11.681 37.574 -0.303 -0.173 -0.171 "O4'" A1IXW 18 A1IXW "C1'" C10 C 0 1 N N R N N N 13.244 10.276 37.237 0.983 -0.827 -0.122 "C1'" A1IXW 19 A1IXW C7 C11 C 0 1 N N N N N N 14.251 9.343 34.580 3.261 -0.741 -1.835 C7 A1IXW 20 A1IXW O4 O8 O 0 1 N N N N N N 18.674 9.465 36.457 4.846 2.794 0.937 O4 A1IXW 21 A1IXW N3 N2 N 0 1 N N N N N N 16.873 9.955 37.805 2.884 1.888 1.472 N3 A1IXW 22 A1IXW O2 O9 O 0 1 N N N N N N 15.224 10.593 39.061 0.944 0.915 1.913 O2 A1IXW 23 A1IXW C1 C12 C 0 1 N N N N N N 14.848 8.449 33.460 2.533 -0.150 -3.043 C1 A1IXW 24 A1IXW H1 H1 H 0 1 N N N N N N 13.515 11.387 34.716 5.280 -1.252 -1.284 H1 A1IXW 25 A1IXW H2 H2 H 0 1 N N N N N N 14.871 11.162 33.559 4.832 -1.710 -2.945 H2 A1IXW 26 A1IXW H3 H3 H 0 1 N N N N N N 13.220 10.597 33.130 5.156 -0.005 -2.549 H3 A1IXW 27 A1IXW H4 H4 H 0 1 N N N N N N 16.932 8.984 34.537 4.988 1.153 -1.050 H4 A1IXW 28 A1IXW H5 H5 H 0 1 N N N N N N 10.535 14.021 43.083 -3.826 2.723 0.396 H5 A1IXW 29 A1IXW H6 H6 H 0 1 N N N N N N 14.126 13.166 42.919 -5.921 1.893 -1.815 H6 A1IXW 30 A1IXW H7 H7 H 0 1 N N N N N N 13.573 11.603 40.199 -2.412 0.058 1.364 H7 A1IXW 31 A1IXW H8 H8 H 0 1 N N N N N N 13.412 13.284 39.586 -3.258 -1.426 0.865 H8 A1IXW 32 A1IXW H9 H9 H 0 1 N N N N N N 11.337 12.582 38.315 -1.423 -1.804 -0.850 H9 A1IXW 33 A1IXW H10 H10 H 0 1 N N N N N N 11.246 10.324 39.880 -1.012 -1.794 2.145 H10 A1IXW 34 A1IXW H11 H11 H 0 1 N N N N N N 9.585 11.055 38.431 -0.571 -4.076 1.597 H11 A1IXW 35 A1IXW H12 H12 H 0 1 N N N N N N 13.189 9.292 39.159 1.256 -1.398 1.965 H12 A1IXW 36 A1IXW H13 H13 H 0 1 N N N N N N 11.405 7.894 38.544 1.477 -3.732 1.407 H13 A1IXW 37 A1IXW H14 H14 H 0 1 N N N N N N 12.709 10.086 36.295 1.180 -1.349 -1.059 H14 A1IXW 38 A1IXW H15 H15 H 0 1 N N N N N N 13.314 8.892 34.938 2.815 -1.701 -1.576 H15 A1IXW 39 A1IXW H16 H16 H 0 1 N N N N N N 17.499 10.106 38.570 2.784 2.483 2.231 H16 A1IXW 40 A1IXW H17 H17 H 0 1 N N N N N N 15.082 7.455 33.869 2.686 -0.792 -3.910 H17 A1IXW 41 A1IXW H18 H18 H 0 1 N N N N N N 14.117 8.347 32.644 1.467 -0.080 -2.827 H18 A1IXW 42 A1IXW H19 H19 H 0 1 N N N N N N 15.768 8.912 33.073 2.926 0.845 -3.254 H19 A1IXW 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IXW C1 C7 SING N N 1 A1IXW C3 C7 SING N N 2 A1IXW C7 C6 SING N N 3 A1IXW C5 C6 DOUB N N 4 A1IXW C5 C4 SING N N 5 A1IXW C6 N1 SING N N 6 A1IXW O4 C4 DOUB N N 7 A1IXW C4 N3 SING N N 8 A1IXW N1 "C1'" SING N N 9 A1IXW N1 C2 SING N N 10 A1IXW "C1'" "O4'" SING N N 11 A1IXW "C1'" "C2'" SING N N 12 A1IXW "O4'" "C4'" SING N N 13 A1IXW N3 C2 SING N N 14 A1IXW "O2'" "C2'" SING N N 15 A1IXW C2 O2 DOUB N N 16 A1IXW "O3'" "C3'" SING N N 17 A1IXW "C2'" "C3'" SING N N 18 A1IXW "C4'" "C3'" SING N N 19 A1IXW "C4'" "C5'" SING N N 20 A1IXW "C5'" "O5'" SING N N 21 A1IXW "O5'" P SING N N 22 A1IXW O2P P DOUB N N 23 A1IXW P O3P SING N N 24 A1IXW P O1P SING N N 25 A1IXW C3 H1 SING N N 26 A1IXW C3 H2 SING N N 27 A1IXW C3 H3 SING N N 28 A1IXW C5 H4 SING N N 29 A1IXW O1P H5 SING N N 30 A1IXW O3P H6 SING N N 31 A1IXW "C5'" H7 SING N N 32 A1IXW "C5'" H8 SING N N 33 A1IXW "C4'" H9 SING N N 34 A1IXW "C3'" H10 SING N N 35 A1IXW "O3'" H11 SING N N 36 A1IXW "C2'" H12 SING N N 37 A1IXW "O2'" H13 SING N N 38 A1IXW "C1'" H14 SING N N 39 A1IXW C7 H15 SING N N 40 A1IXW N3 H16 SING N N 41 A1IXW C1 H17 SING N N 42 A1IXW C1 H18 SING N N 43 A1IXW C1 H19 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IXW InChI InChI 1.06 "InChI=1S/C12H19N2O9P/c1-5(2)6-3-8(15)13-12(18)14(6)11-10(17)9(16)7(23-11)4-22-24(19,20)21/h3,5,7,9-11,16-17H,4H2,1-2H3,(H,13,15,18)(H2,19,20,21)/t7-,9-,10-,11-/m1/s1" A1IXW InChIKey InChI 1.06 FEZVCGKAYQTJKD-QCNRFFRDSA-N A1IXW SMILES_CANONICAL CACTVS 3.385 "CC(C)C1=CC(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" A1IXW SMILES CACTVS 3.385 "CC(C)C1=CC(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" A1IXW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C1=CC(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" A1IXW SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C1=CC(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1IXW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)-6-propan-2-yl-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IXW "Create component" 2025-01-03 PDBE A1IXW "Initial release" 2026-07-15 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IXW _pdbx_chem_comp_synonyms.name 6-isopropyl-UMP _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #