data_A1IXX # _chem_comp.id A1IXX _chem_comp.name "~{N}-[[4-(dimethylamino)oxan-4-yl]methyl]-1-(phenylcarbonyl)indole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1-benzoyl-N-((4-(dimethylamino)tetrahydro-2H-pyran-4-yl)methyl)indoline-5-carboxamide)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-03 _chem_comp.pdbx_modified_date 2026-02-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.489 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IXX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9HUF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IXX C1 C1 C 0 1 N N N N N N 99.556 109.582 109.859 1.637 -1.531 0.430 C1 A1IXX 1 A1IXX O2 O1 O 0 1 N N N N N N 98.362 111.716 103.685 -5.233 -0.674 -1.944 O2 A1IXX 2 A1IXX C3 C2 C 0 1 Y N N N N N 100.692 109.270 107.626 -0.685 -2.362 0.730 C3 A1IXX 3 A1IXX C4 C3 C 0 1 Y N N N N N 100.767 109.513 106.233 -2.055 -2.227 0.523 C4 A1IXX 4 A1IXX C5 C4 C 0 1 Y N N N N N 101.681 109.114 105.220 -3.226 -3.022 0.911 C5 A1IXX 5 A1IXX C7 C5 C 0 1 N N N N N N 99.314 111.112 103.328 -4.766 -0.399 -0.856 C7 A1IXX 6 A1IXX C8 C6 C 0 1 Y N N N N N 99.699 111.247 101.858 -5.121 0.876 -0.201 C8 A1IXX 7 A1IXX C9 C7 C 0 1 Y N N N N N 101.022 111.505 101.540 -6.061 1.727 -0.786 C9 A1IXX 8 A1IXX C10 C8 C 0 1 Y N N N N N 101.416 111.671 100.228 -6.388 2.917 -0.169 C10 A1IXX 9 A1IXX C12 C9 C 0 1 Y N N N N N 99.148 111.341 99.547 -4.855 2.429 1.612 C12 A1IXX 10 A1IXX C14 C10 C 0 1 Y N N N N N 99.818 110.287 105.622 -2.552 -1.128 -0.204 C14 A1IXX 11 A1IXX C19 C11 C 0 1 N N N N N N 100.100 108.595 114.540 4.908 1.916 -2.346 C19 A1IXX 12 A1IXX C20 C12 C 0 1 N N N N N N 102.409 108.311 114.258 4.582 -0.470 -2.599 C20 A1IXX 13 A1IXX C21 C13 C 0 1 N N N N N N 102.072 107.119 111.794 6.144 0.335 -0.277 C21 A1IXX 14 A1IXX C22 C14 C 0 1 N N N N N N 102.124 105.600 111.961 6.527 0.206 1.199 C22 A1IXX 15 A1IXX C23 C15 C 0 1 N N N N N N 99.774 105.507 112.274 4.668 1.562 1.878 C23 A1IXX 16 A1IXX C24 C16 C 0 1 N N N N N N 99.640 107.020 112.153 4.211 1.745 0.428 C24 A1IXX 17 A1IXX C11 C17 C 0 1 Y N N N N N 100.472 111.588 99.226 -5.787 3.268 1.027 C11 A1IXX 18 A1IXX C13 C18 C 0 1 Y N N N N N 98.751 111.179 100.860 -4.523 1.234 1.009 C13 A1IXX 19 A1IXX C15 C19 C 0 1 Y N N N N N 98.762 110.850 106.388 -1.668 -0.182 -0.713 C15 A1IXX 20 A1IXX C16 C20 C 0 1 Y N N N N N 98.682 110.608 107.747 -0.325 -0.315 -0.509 C16 A1IXX 21 A1IXX C17 C21 C 0 1 N N N N N N 100.776 109.225 112.016 3.920 -0.724 0.155 C17 A1IXX 22 A1IXX C18 C22 C 0 1 N N N N N N 100.917 107.707 112.491 4.627 0.518 -0.389 C18 A1IXX 23 A1IXX C2 C23 C 0 1 Y N N N N N 99.633 109.795 108.355 0.182 -1.404 0.213 C2 A1IXX 24 A1IXX C6 C24 C 0 1 Y N N N N N 101.214 109.688 104.045 -4.306 -2.395 0.425 C6 A1IXX 25 A1IXX N1 N1 N 0 1 Y N N N N N 100.122 110.389 104.302 -3.925 -1.258 -0.247 N1 A1IXX 26 A1IXX N2 N2 N 0 1 N N N N N N 100.799 109.369 110.573 2.477 -0.601 -0.066 N2 A1IXX 27 A1IXX N3 N3 N 0 1 N N N N N N 101.111 107.741 113.940 4.259 0.718 -1.797 N3 A1IXX 28 A1IXX O1 O2 O 0 1 N N N N N N 98.536 109.695 110.442 2.078 -2.473 1.061 O1 A1IXX 29 A1IXX O3 O3 O 0 1 N N N N N N 100.871 105.052 111.417 6.084 1.365 1.908 O3 A1IXX 30 A1IXX H1 H1 H 0 1 N N N N N N 101.452 108.681 108.118 -0.299 -3.201 1.291 H1 A1IXX 31 A1IXX H2 H2 H 0 1 N N N N N N 102.557 108.493 105.339 -3.219 -3.939 1.482 H2 A1IXX 32 A1IXX H3 H3 H 0 1 N N N N N N 101.755 111.577 102.330 -6.531 1.455 -1.720 H3 A1IXX 33 A1IXX H4 H4 H 0 1 N N N N N N 102.451 111.864 99.989 -7.115 3.576 -0.620 H4 A1IXX 34 A1IXX H5 H5 H 0 1 N N N N N N 98.414 111.274 98.758 -4.392 2.707 2.547 H5 A1IXX 35 A1IXX H6 H6 H 0 1 N N N N N N 100.243 108.623 115.630 5.990 1.805 -2.281 H6 A1IXX 36 A1IXX H7 H7 H 0 1 N N N N N N 100.191 109.613 114.132 4.618 2.040 -3.390 H7 A1IXX 37 A1IXX H8 H8 H 0 1 N N N N N N 99.101 108.196 114.311 4.597 2.791 -1.776 H8 A1IXX 38 A1IXX H9 H9 H 0 1 N N N N N N 102.544 108.331 115.350 3.961 -1.306 -2.277 H9 A1IXX 39 A1IXX H10 H10 H 0 1 N N N N N N 103.200 107.697 113.803 4.391 -0.261 -3.652 H10 A1IXX 40 A1IXX H11 H11 H 0 1 N N N N N N 102.466 109.336 113.862 5.633 -0.725 -2.464 H11 A1IXX 41 A1IXX H12 H12 H 0 1 N N N N N N 102.995 107.554 112.205 6.648 1.198 -0.711 H12 A1IXX 42 A1IXX H13 H13 H 0 1 N N N N N N 102.000 107.357 110.722 6.442 -0.568 -0.811 H13 A1IXX 43 A1IXX H14 H14 H 0 1 N N N N N N 102.215 105.342 113.026 6.055 -0.681 1.622 H14 A1IXX 44 A1IXX H15 H15 H 0 1 N N N N N N 102.983 105.191 111.410 7.610 0.118 1.288 H15 A1IXX 45 A1IXX H16 H16 H 0 1 N N N N N N 98.836 105.028 111.957 4.412 2.450 2.454 H16 A1IXX 46 A1IXX H17 H17 H 0 1 N N N N N N 99.988 105.239 113.319 4.172 0.693 2.309 H17 A1IXX 47 A1IXX H18 H18 H 0 1 N N N N N N 99.360 107.273 111.120 3.126 1.850 0.399 H18 A1IXX 48 A1IXX H19 H19 H 0 1 N N N N N N 98.854 107.366 112.841 4.676 2.637 0.009 H19 A1IXX 49 A1IXX H20 H20 H 0 1 N N N N N N 100.765 111.715 98.194 -6.043 4.202 1.503 H20 A1IXX 50 A1IXX H21 H21 H 0 1 N N N N N N 97.713 111.002 101.101 -3.795 0.581 1.466 H21 A1IXX 51 A1IXX H22 H22 H 0 1 N N N N N N 98.019 111.469 105.907 -2.045 0.662 -1.271 H22 A1IXX 52 A1IXX H23 H23 H 0 1 N N N N N N 97.887 111.047 108.332 0.353 0.424 -0.908 H23 A1IXX 53 A1IXX H24 H24 H 0 1 N N N N N N 101.609 109.804 112.440 4.292 -1.610 -0.360 H24 A1IXX 54 A1IXX H25 H25 H 0 1 N N N N N N 99.823 109.624 112.393 4.117 -0.816 1.223 H25 A1IXX 55 A1IXX H26 H26 H 0 1 N N N N N N 101.671 109.579 103.073 -5.325 -2.733 0.543 H26 A1IXX 56 A1IXX H27 H27 H 0 1 N N N N N N 101.665 109.322 110.075 2.126 0.150 -0.569 H27 A1IXX 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IXX C11 C12 DOUB Y N 1 A1IXX C11 C10 SING Y N 2 A1IXX C12 C13 SING Y N 3 A1IXX C10 C9 DOUB Y N 4 A1IXX C13 C8 DOUB Y N 5 A1IXX C9 C8 SING Y N 6 A1IXX C8 C7 SING N N 7 A1IXX C7 O2 DOUB N N 8 A1IXX C7 N1 SING N N 9 A1IXX C6 N1 SING Y N 10 A1IXX C6 C5 DOUB Y N 11 A1IXX N1 C14 SING Y N 12 A1IXX C5 C4 SING Y N 13 A1IXX C14 C4 DOUB Y N 14 A1IXX C14 C15 SING Y N 15 A1IXX C4 C3 SING Y N 16 A1IXX C15 C16 DOUB Y N 17 A1IXX C3 C2 DOUB Y N 18 A1IXX C16 C2 SING Y N 19 A1IXX C2 C1 SING N N 20 A1IXX C1 O1 DOUB N N 21 A1IXX C1 N2 SING N N 22 A1IXX N2 C17 SING N N 23 A1IXX O3 C22 SING N N 24 A1IXX O3 C23 SING N N 25 A1IXX C21 C22 SING N N 26 A1IXX C21 C18 SING N N 27 A1IXX C17 C18 SING N N 28 A1IXX C24 C23 SING N N 29 A1IXX C24 C18 SING N N 30 A1IXX C18 N3 SING N N 31 A1IXX N3 C20 SING N N 32 A1IXX N3 C19 SING N N 33 A1IXX C3 H1 SING N N 34 A1IXX C5 H2 SING N N 35 A1IXX C9 H3 SING N N 36 A1IXX C10 H4 SING N N 37 A1IXX C12 H5 SING N N 38 A1IXX C19 H6 SING N N 39 A1IXX C19 H7 SING N N 40 A1IXX C19 H8 SING N N 41 A1IXX C20 H9 SING N N 42 A1IXX C20 H10 SING N N 43 A1IXX C20 H11 SING N N 44 A1IXX C21 H12 SING N N 45 A1IXX C21 H13 SING N N 46 A1IXX C22 H14 SING N N 47 A1IXX C22 H15 SING N N 48 A1IXX C23 H16 SING N N 49 A1IXX C23 H17 SING N N 50 A1IXX C24 H18 SING N N 51 A1IXX C24 H19 SING N N 52 A1IXX C11 H20 SING N N 53 A1IXX C13 H21 SING N N 54 A1IXX C15 H22 SING N N 55 A1IXX C16 H23 SING N N 56 A1IXX C17 H24 SING N N 57 A1IXX C17 H25 SING N N 58 A1IXX C6 H26 SING N N 59 A1IXX N2 H27 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IXX InChI InChI 1.06 "InChI=1S/C24H27N3O3/c1-26(2)24(11-14-30-15-12-24)17-25-22(28)20-8-9-21-19(16-20)10-13-27(21)23(29)18-6-4-3-5-7-18/h3-10,13,16H,11-12,14-15,17H2,1-2H3,(H,25,28)" A1IXX InChIKey InChI 1.06 XGNCGYKTOSZKDU-UHFFFAOYSA-N A1IXX SMILES_CANONICAL CACTVS 3.385 "CN(C)C1(CCOCC1)CNC(=O)c2ccc3n(ccc3c2)C(=O)c4ccccc4" A1IXX SMILES CACTVS 3.385 "CN(C)C1(CCOCC1)CNC(=O)c2ccc3n(ccc3c2)C(=O)c4ccccc4" A1IXX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C1(CCOCC1)CNC(=O)c2ccc3c(c2)ccn3C(=O)c4ccccc4" A1IXX SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C1(CCOCC1)CNC(=O)c2ccc3c(c2)ccn3C(=O)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id A1IXX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[4-(dimethylamino)oxan-4-yl]methyl]-1-(phenylcarbonyl)indole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IXX "Create component" 2025-01-03 PDBE A1IXX "Initial release" 2026-02-25 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1IXX _pdbx_chem_comp_synonyms.name "(1-benzoyl-N-((4-(dimethylamino)tetrahydro-2H-pyran-4-yl)methyl)indoline-5-carboxamide)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #