data_A1IY0 # _chem_comp.id A1IY0 _chem_comp.name "[[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2-(methylamino)-6-oxidanyl-2-(propylamino)-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H33 N7 O13 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-17 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 673.528 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IY0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GMR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IY0 C10 C1 C 0 1 N N N N N N 143.528 155.929 84.390 4.139 -2.372 -0.957 C10 A1IY0 1 A1IY0 C13 C2 C 0 1 N N S N N N 135.807 152.630 82.658 -5.249 -1.088 2.618 C13 A1IY0 2 A1IY0 C15 C3 C 0 1 N N R N N N 135.051 152.368 80.430 -5.536 0.601 0.925 C15 A1IY0 3 A1IY0 C17 C4 C 0 1 Y N N N N N 135.782 151.009 77.260 -7.602 1.921 -1.776 C17 A1IY0 4 A1IY0 C20 C5 C 0 1 Y N N N N N 135.711 151.095 75.938 -8.526 2.887 -2.211 C20 A1IY0 5 A1IY0 C01 C6 C 0 1 N N R N N N 145.133 157.456 85.436 6.406 -1.326 -1.256 C01 A1IY0 6 A1IY0 C02 C7 C 0 1 N N R N N N 146.425 156.968 85.290 7.153 -0.375 -0.282 C02 A1IY0 7 A1IY0 C03 C8 C 0 1 N N R N N N 148.198 156.929 87.096 7.193 1.982 0.165 C03 A1IY0 8 A1IY0 C04 C9 C 0 1 N N N N N N 148.728 158.925 88.340 6.437 4.195 0.791 C04 A1IY0 9 A1IY0 C05 C10 C 0 1 N N N N N N 148.459 159.671 89.687 5.624 5.404 0.323 C05 A1IY0 10 A1IY0 C06 C11 C 0 1 N N N N N N 148.545 161.195 89.460 5.642 6.482 1.408 C06 A1IY0 11 A1IY0 C07 C12 C 0 1 N N N N N N 150.216 155.695 87.454 9.224 2.847 -0.829 C07 A1IY0 12 A1IY0 C08 C13 C 0 1 N N R N N N 146.449 155.565 85.810 6.196 -0.429 0.956 C08 A1IY0 13 A1IY0 C09 C14 C 0 1 N N R N N N 144.195 156.271 85.653 4.925 -1.060 -0.914 C09 A1IY0 14 A1IY0 C11 C15 C 0 1 N N N N N N 137.571 154.205 82.053 -3.352 -2.217 1.415 C11 A1IY0 15 A1IY0 C12 C16 C 0 1 N N R N N N 136.127 153.878 81.910 -3.966 -0.867 1.794 C12 A1IY0 16 A1IY0 C14 C17 C 0 1 N N R N N N 135.378 151.637 81.684 -6.356 -0.381 1.799 C14 A1IY0 17 A1IY0 C16 C18 C 0 1 Y N N N N N 136.120 150.483 79.403 -6.201 0.291 -1.490 C16 A1IY0 18 A1IY0 C18 C19 C 0 1 Y N N N N N 135.234 151.983 78.060 -7.151 1.985 -0.447 C18 A1IY0 19 A1IY0 C19 C20 C 0 1 Y N N N N N 134.555 153.107 76.186 -8.482 3.828 -0.103 C19 A1IY0 20 A1IY0 N01 N1 N 0 1 N N N N N N 148.277 157.543 88.453 6.420 3.160 -0.250 N01 A1IY0 21 A1IY0 N02 N2 N 0 1 N N N N N N 149.543 156.690 86.606 8.596 2.347 0.402 N02 A1IY0 22 A1IY0 N03 N3 N 0 1 Y N N N N N 135.470 151.610 79.302 -6.269 0.946 -0.296 N03 A1IY0 23 A1IY0 N04 N4 N 0 1 Y N N N N N 136.374 150.008 78.170 -6.983 0.865 -2.357 N04 A1IY0 24 A1IY0 N05 N5 N 0 1 Y N N N N N 134.625 153.025 77.545 -7.614 2.947 0.346 N05 A1IY0 25 A1IY0 N06 N6 N 0 1 Y N N N N N 135.102 152.135 75.398 -8.928 3.813 -1.347 N06 A1IY0 26 A1IY0 N07 N7 N 0 1 N N N N N N 136.300 150.050 75.080 -9.005 2.875 -3.509 N07 A1IY0 27 A1IY0 O01 O1 O 0 1 N N N N N N 145.076 158.332 86.619 6.683 -0.981 -2.615 O01 A1IY0 28 A1IY0 O02 O2 O 0 1 N N N N N N 147.468 157.896 86.132 7.102 0.947 -0.827 O02 A1IY0 29 A1IY0 O03 O3 O 0 1 N N N N N N 145.006 155.136 86.125 4.878 -0.508 0.406 O03 A1IY0 30 A1IY0 O04 O4 O 0 1 N N N N N N 142.191 156.373 84.402 2.751 -2.102 -0.754 O04 A1IY0 31 A1IY0 O05 O5 O 0 1 N N N N N N 140.668 154.470 83.180 0.202 -2.609 -0.356 O05 A1IY0 32 A1IY0 O06 O6 O 0 1 N N N N N N 138.148 153.399 83.046 -2.104 -2.003 0.753 O06 A1IY0 33 A1IY0 O07 O7 O 0 1 N N N N N N 134.731 152.884 83.588 -5.123 -0.489 3.909 O07 A1IY0 34 A1IY0 O08 O8 O 0 1 N N N N N N 134.200 150.952 82.177 -7.253 0.327 2.656 O08 A1IY0 35 A1IY0 O09 O9 O 0 1 N N N N N N 135.773 153.662 80.485 -4.339 -0.150 0.606 O09 A1IY0 36 A1IY0 O10 O10 O 0 1 N N N N N N 139.629 153.083 85.116 -1.952 -3.990 -0.963 O10 A1IY0 37 A1IY0 O11 O11 O 0 1 N N N N N N 138.782 155.142 84.818 -0.893 -4.143 1.323 O11 A1IY0 38 A1IY0 O12 O12 O 0 1 N N N N N N 140.149 156.988 82.996 1.535 -3.936 -2.193 O12 A1IY0 39 A1IY0 O13 O13 O 0 1 N N N N N N 141.934 156.285 81.843 1.988 -4.281 0.266 O13 A1IY0 40 A1IY0 P01 P1 P 0 1 N N N N N N 141.240 156.040 83.107 1.627 -3.255 -0.738 P01 A1IY0 41 A1IY0 P02 P2 P 0 1 N N N N N N 139.295 154.025 84.041 -1.180 -3.207 0.214 P02 A1IY0 42 A1IY0 S01 S1 S 0 1 N N N N N N 147.364 155.522 87.165 6.463 1.238 1.674 S01 A1IY0 43 A1IY0 H1 H1 H 0 1 N N N N N N 143.546 154.837 84.255 4.279 -2.848 -1.928 H1 A1IY0 44 A1IY0 H2 H2 H 0 1 N N N N N N 144.062 156.410 83.557 4.499 -3.037 -0.171 H2 A1IY0 45 A1IY0 H3 H3 H 0 1 N N N N N N 136.701 152.277 83.193 -5.464 -2.152 2.711 H3 A1IY0 46 A1IY0 H4 H4 H 0 1 N N N N N N 133.968 152.553 80.386 -5.286 1.499 1.490 H4 A1IY0 47 A1IY0 H5 H5 H 0 1 N N N N N N 144.814 158.012 84.542 6.668 -2.366 -1.062 H5 A1IY0 48 A1IY0 H6 H6 H 0 1 N N N N N N 146.738 156.977 84.235 8.165 -0.708 -0.053 H6 A1IY0 49 A1IY0 H7 H7 H 0 1 N N N N N N 149.806 158.942 88.120 7.466 4.501 0.983 H7 A1IY0 50 A1IY0 H8 H8 H 0 1 N N N N N N 148.180 159.425 87.528 6.001 3.796 1.707 H8 A1IY0 51 A1IY0 H9 H9 H 0 1 N N N N N N 147.455 159.412 90.055 6.061 5.802 -0.593 H9 A1IY0 52 A1IY0 H10 H10 H 0 1 N N N N N N 149.212 159.368 90.430 4.596 5.097 0.132 H10 A1IY0 53 A1IY0 H11 H11 H 0 1 N N N N N N 148.356 161.719 90.409 5.063 7.343 1.074 H11 A1IY0 54 A1IY0 H12 H12 H 0 1 N N N N N N 149.549 161.455 89.092 5.205 6.083 2.324 H12 A1IY0 55 A1IY0 H13 H13 H 0 1 N N N N N N 147.792 161.498 88.717 6.670 6.788 1.599 H13 A1IY0 56 A1IY0 H14 H14 H 0 1 N N N N N N 151.234 155.519 87.077 10.286 3.016 -0.652 H14 A1IY0 57 A1IY0 H15 H15 H 0 1 N N N N N N 150.268 156.069 88.487 9.101 2.112 -1.624 H15 A1IY0 58 A1IY0 H16 H16 H 0 1 N N N N N N 149.650 154.752 87.433 8.751 3.784 -1.123 H16 A1IY0 59 A1IY0 H17 H17 H 0 1 N N N N N N 146.889 154.885 85.065 6.423 -1.245 1.642 H17 A1IY0 60 A1IY0 H18 H18 H 0 1 N N N N N N 143.446 156.538 86.413 4.503 -0.353 -1.627 H18 A1IY0 61 A1IY0 H19 H19 H 0 1 N N N N N N 138.082 154.026 81.096 -3.189 -2.807 2.317 H19 A1IY0 62 A1IY0 H20 H20 H 0 1 N N N N N N 137.679 155.263 82.334 -4.030 -2.750 0.749 H20 A1IY0 63 A1IY0 H21 H21 H 0 1 N N N N N N 135.526 154.706 82.313 -3.249 -0.284 2.372 H21 A1IY0 64 A1IY0 H22 H22 H 0 1 N N N N N N 136.187 150.916 81.494 -6.896 -1.096 1.178 H22 A1IY0 65 A1IY0 H23 H23 H 0 1 N N N N N N 136.408 150.007 80.329 -5.587 -0.575 -1.687 H23 A1IY0 66 A1IY0 H24 H24 H 0 1 N N N N N N 134.061 153.951 75.727 -8.838 4.595 0.567 H24 A1IY0 67 A1IY0 H25 H25 H 0 1 N N N N N N 147.373 157.522 88.881 6.760 3.524 -1.128 H25 A1IY0 68 A1IY0 H27 H27 H 0 1 N N N N N N 149.498 156.349 85.667 8.673 3.023 1.147 H27 A1IY0 69 A1IY0 H29 H29 H 0 1 N N N N N N 136.150 150.283 74.119 -8.704 2.194 -4.131 H29 A1IY0 70 A1IY0 H30 H30 H 0 1 N N N N N N 137.282 149.987 75.258 -9.642 3.547 -3.797 H30 A1IY0 71 A1IY0 H31 H31 H 0 1 N N N N N N 144.193 158.668 86.723 6.177 -1.491 -3.262 H31 A1IY0 72 A1IY0 H32 H32 H 0 1 N N N N N N 135.009 153.532 84.225 -5.913 -0.574 4.461 H32 A1IY0 73 A1IY0 H33 H33 H 0 1 N N N N N N 134.415 150.487 82.977 -7.789 -0.245 3.223 H33 A1IY0 74 A1IY0 H34 H34 H 0 1 N N N N N N 139.418 153.473 85.956 -2.173 -3.436 -1.724 H34 A1IY0 75 A1IY0 H35 H35 H 0 1 N N N N N N 140.218 157.456 82.172 1.301 -3.320 -2.902 H35 A1IY0 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IY0 N07 C20 SING N N 1 A1IY0 N06 C20 DOUB Y N 2 A1IY0 N06 C19 SING Y N 3 A1IY0 C20 C17 SING Y N 4 A1IY0 C19 N05 DOUB Y N 5 A1IY0 C17 C18 DOUB Y N 6 A1IY0 C17 N04 SING Y N 7 A1IY0 N05 C18 SING Y N 8 A1IY0 C18 N03 SING Y N 9 A1IY0 N04 C16 DOUB Y N 10 A1IY0 N03 C16 SING Y N 11 A1IY0 N03 C15 SING N N 12 A1IY0 C15 O09 SING N N 13 A1IY0 C15 C14 SING N N 14 A1IY0 O09 C12 SING N N 15 A1IY0 C14 O08 SING N N 16 A1IY0 C14 C13 SING N N 17 A1IY0 O13 P01 DOUB N N 18 A1IY0 C12 C11 SING N N 19 A1IY0 C12 C13 SING N N 20 A1IY0 C11 O06 SING N N 21 A1IY0 C13 O07 SING N N 22 A1IY0 O12 P01 SING N N 23 A1IY0 O06 P02 SING N N 24 A1IY0 P01 O05 SING N N 25 A1IY0 P01 O04 SING N N 26 A1IY0 O05 P02 SING N N 27 A1IY0 P02 O11 DOUB N N 28 A1IY0 P02 O10 SING N N 29 A1IY0 C10 O04 SING N N 30 A1IY0 C10 C09 SING N N 31 A1IY0 C02 C01 SING N N 32 A1IY0 C02 C08 SING N N 33 A1IY0 C02 O02 SING N N 34 A1IY0 C01 C09 SING N N 35 A1IY0 C01 O01 SING N N 36 A1IY0 C09 O03 SING N N 37 A1IY0 C08 O03 SING N N 38 A1IY0 C08 S01 SING N N 39 A1IY0 O02 C03 SING N N 40 A1IY0 N02 C03 SING N N 41 A1IY0 N02 C07 SING N N 42 A1IY0 C03 S01 SING N N 43 A1IY0 C03 N01 SING N N 44 A1IY0 C04 N01 SING N N 45 A1IY0 C04 C05 SING N N 46 A1IY0 C06 C05 SING N N 47 A1IY0 C10 H1 SING N N 48 A1IY0 C10 H2 SING N N 49 A1IY0 C13 H3 SING N N 50 A1IY0 C15 H4 SING N N 51 A1IY0 C01 H5 SING N N 52 A1IY0 C02 H6 SING N N 53 A1IY0 C04 H7 SING N N 54 A1IY0 C04 H8 SING N N 55 A1IY0 C05 H9 SING N N 56 A1IY0 C05 H10 SING N N 57 A1IY0 C06 H11 SING N N 58 A1IY0 C06 H12 SING N N 59 A1IY0 C06 H13 SING N N 60 A1IY0 C07 H14 SING N N 61 A1IY0 C07 H15 SING N N 62 A1IY0 C07 H16 SING N N 63 A1IY0 C08 H17 SING N N 64 A1IY0 C09 H18 SING N N 65 A1IY0 C11 H19 SING N N 66 A1IY0 C11 H20 SING N N 67 A1IY0 C12 H21 SING N N 68 A1IY0 C14 H22 SING N N 69 A1IY0 C16 H23 SING N N 70 A1IY0 C19 H24 SING N N 71 A1IY0 N01 H25 SING N N 72 A1IY0 N02 H27 SING N N 73 A1IY0 N07 H29 SING N N 74 A1IY0 N07 H30 SING N N 75 A1IY0 O01 H31 SING N N 76 A1IY0 O07 H32 SING N N 77 A1IY0 O08 H33 SING N N 78 A1IY0 O10 H34 SING N N 79 A1IY0 O12 H35 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IY0 InChI InChI 1.06 "InChI=1S/C20H33N7O13P2S/c1-3-4-26-20(22-2)39-15-13(29)10(38-19(15)43-20)6-36-42(33,34)40-41(31,32)35-5-9-12(28)14(30)18(37-9)27-8-25-11-16(21)23-7-24-17(11)27/h7-10,12-15,18-19,22,26,28-30H,3-6H2,1-2H3,(H,31,32)(H,33,34)(H2,21,23,24)/t9-,10-,12-,13-,14-,15-,18-,19-,20-/m1/s1" A1IY0 InChIKey InChI 1.06 RTLOVKKJOOOFSD-SUAKPWHCSA-N A1IY0 SMILES_CANONICAL CACTVS 3.385 "CCCN[C@]1(NC)O[C@@H]2[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)O[C@@H]2S1" A1IY0 SMILES CACTVS 3.385 "CCCN[C]1(NC)O[CH]2[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)O[CH]2S1" A1IY0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCN[C@@]1(O[C@@H]2[C@@H]([C@H](O[C@@H]2S1)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)NC" A1IY0 SMILES "OpenEye OEToolkits" 2.0.7 "CCCNC1(OC2C(C(OC2S1)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)NC" # _pdbx_chem_comp_identifier.comp_id A1IY0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2-(methylamino)-6-oxidanyl-2-(propylamino)-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IY0 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C06 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom CB _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IY0 "Create component" 2025-01-17 PDBE A1IY0 "Modify PCM" 2025-01-21 PDBE A1IY0 "Initial release" 2025-01-29 RCSB #