data_A1IYL # _chem_comp.id A1IYL _chem_comp.name "~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]quinoline-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-14 _chem_comp.pdbx_modified_date 2025-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.493 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IYL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9GF7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IYL C1 C1 C 0 1 N N N N N N -16.535 1.273 10.057 5.958 -1.297 -1.210 C1 A1IYL 1 A1IYL C2 C2 C 0 1 N N S N N N -17.556 0.436 10.806 4.792 -1.026 -0.286 C2 A1IYL 2 A1IYL C3 C3 C 0 1 N N N N N N -17.067 -0.998 10.848 4.980 0.310 0.436 C3 A1IYL 3 A1IYL C4 C4 C 0 1 N N S N N N -18.032 -1.925 11.592 3.736 0.618 1.271 C4 A1IYL 4 A1IYL C5 C5 C 0 1 N N N N N N -19.325 -1.291 13.591 1.340 0.563 0.828 C5 A1IYL 5 A1IYL C6 C6 C 0 1 N N S N N N -19.276 -0.416 14.838 0.159 0.763 -0.086 C6 A1IYL 6 A1IYL C7 C7 C 0 1 N N N N N N -19.227 1.824 14.247 -2.168 0.039 -0.057 C7 A1IYL 7 A1IYL N1 N1 N 0 1 N N N N N N -18.157 -1.471 12.967 2.587 0.812 0.382 N1 A1IYL 8 A1IYL O1 O1 O 0 1 N N N N N N -15.320 1.261 10.266 6.452 -0.484 -1.963 O1 A1IYL 9 A1IYL C8 C8 C 0 1 Y N N N N N -19.838 3.193 14.249 -3.409 -0.299 0.664 C8 A1IYL 10 A1IYL C9 C9 C 0 1 Y N N N N N -20.233 3.728 13.051 -3.461 -0.215 2.047 C9 A1IYL 11 A1IYL C10 C10 C 0 1 Y N N N N N -20.784 5.019 12.974 -4.626 -0.531 2.734 C10 A1IYL 12 A1IYL C11 C11 C 0 1 Y N N N N N -20.932 5.773 14.095 -5.748 -0.932 2.070 C11 A1IYL 13 A1IYL C12 C12 C 0 1 Y N N N N N -20.521 5.271 15.349 -5.738 -1.031 0.669 C12 A1IYL 14 A1IYL C13 C13 C 0 1 Y N N N N N -19.966 3.967 15.431 -4.563 -0.708 -0.052 C13 A1IYL 15 A1IYL C14 C14 C 0 1 Y N N N N N -19.679 4.184 17.689 -5.618 -1.173 -2.050 C14 A1IYL 16 A1IYL N2 N2 N 0 1 N N N N N N -19.967 0.835 14.733 -1.075 0.427 0.630 N2 A1IYL 17 A1IYL O2 O2 O 0 1 N N N N N N -18.093 1.655 13.809 -2.130 -0.032 -1.270 O2 A1IYL 18 A1IYL C15 C15 C 0 1 Y N N N N N -20.216 5.480 17.698 -6.803 -1.515 -1.404 C15 A1IYL 19 A1IYL C16 C16 C 0 1 Y N N N N N -20.648 6.022 16.534 -6.882 -1.441 -0.042 C16 A1IYL 20 A1IYL C17 C17 C 0 1 N N N N N N -19.702 -1.169 16.086 0.105 2.223 -0.537 C17 A1IYL 21 A1IYL O3 O3 O 0 1 N N N N N N -20.385 -1.795 13.221 1.169 0.178 1.966 O3 A1IYL 22 A1IYL C19 C18 C 0 1 N N N N N N -19.994 0.239 18.100 -1.154 3.880 -1.920 C19 A1IYL 23 A1IYL C21 C19 C 0 1 N N N N N N -17.368 -3.290 11.540 3.967 1.872 2.074 C21 A1IYL 24 A1IYL C22 C20 C 0 1 N N N N N N -18.877 0.725 10.094 4.827 -2.197 0.723 C22 A1IYL 25 A1IYL C23 C21 C 0 1 N N N N N N -18.620 2.034 9.379 5.556 -3.290 -0.089 C23 A1IYL 26 A1IYL C18 C22 C 0 1 N N N N N N -19.038 -0.654 17.348 -1.018 2.399 -1.561 C18 A1IYL 27 A1IYL N3 N3 N 0 1 Y N N N N N -19.547 3.434 16.616 -4.553 -0.795 -1.382 N3 A1IYL 28 A1IYL C20 C23 C 0 1 N N N N N N -18.528 -1.781 18.212 -0.689 1.598 -2.822 C20 A1IYL 29 A1IYL N4 N4 N 0 1 N N N N N N -17.182 2.007 9.165 6.372 -2.568 -1.071 N4 A1IYL 30 A1IYL O4 O4 O 0 1 N N N N N N -17.676 -4.128 10.697 3.247 2.829 1.919 O4 A1IYL 31 A1IYL H1 H1 H 0 1 N N N N N N -17.628 0.812 11.837 3.855 -1.028 -0.844 H1 A1IYL 32 A1IYL H2 H2 H 0 1 N N N N N N -16.953 -1.362 9.816 5.850 0.250 1.090 H2 A1IYL 33 A1IYL H3 H3 H 0 1 N N N N N N -16.092 -1.023 11.356 5.131 1.102 -0.298 H3 A1IYL 34 A1IYL H4 H4 H 0 1 N N N N N N -19.008 -1.950 11.085 3.536 -0.214 1.946 H4 A1IYL 35 A1IYL H5 H5 H 0 1 N N N N N N -18.213 -0.175 14.987 0.261 0.116 -0.957 H5 A1IYL 36 A1IYL H6 H6 H 0 1 N N N N N N -17.318 -1.282 13.477 2.724 1.120 -0.527 H6 A1IYL 37 A1IYL H7 H7 H 0 1 N N N N N N -20.119 3.146 12.148 -2.586 0.099 2.597 H7 A1IYL 38 A1IYL H8 H8 H 0 1 N N N N N N -21.092 5.414 12.017 -4.644 -0.459 3.811 H8 A1IYL 39 A1IYL H9 H9 H 0 1 N N N N N N -21.366 6.760 14.026 -6.644 -1.174 2.622 H9 A1IYL 40 A1IYL H10 H10 H 0 1 N N N N N N -19.350 3.772 18.631 -5.568 -1.236 -3.127 H10 A1IYL 41 A1IYL H11 H11 H 0 1 N N N N N N -20.923 0.953 15.002 -1.105 0.483 1.598 H11 A1IYL 42 A1IYL H12 H12 H 0 1 N N N N N N -20.284 6.038 18.620 -7.658 -1.837 -1.979 H12 A1IYL 43 A1IYL H13 H13 H 0 1 N N N N N N -21.081 7.011 16.515 -7.797 -1.692 0.475 H13 A1IYL 44 A1IYL H14 H14 H 0 1 N N N N N N -20.792 -1.071 16.199 -0.086 2.863 0.324 H14 A1IYL 45 A1IYL H15 H15 H 0 1 N N N N N N -19.440 -2.230 15.961 1.057 2.499 -0.991 H15 A1IYL 46 A1IYL H16 H16 H 0 1 N N N N N N -19.508 0.610 19.014 -0.217 4.239 -2.344 H16 A1IYL 47 A1IYL H17 H17 H 0 1 N N N N N N -20.277 1.091 17.464 -1.954 4.006 -2.650 H17 A1IYL 48 A1IYL H18 H18 H 0 1 N N N N N N -20.894 -0.333 18.370 -1.389 4.451 -1.022 H18 A1IYL 49 A1IYL H19 H19 H 0 1 N N N N N N -16.604 -3.530 12.264 4.777 1.915 2.787 H19 A1IYL 50 A1IYL H20 H20 H 0 1 N N N N N N -19.699 0.828 10.818 5.397 -1.927 1.613 H20 A1IYL 51 A1IYL H21 H21 H 0 1 N N N N N N -19.119 -0.073 9.377 3.819 -2.513 0.989 H21 A1IYL 52 A1IYL H22 H22 H 0 1 N N N N N N -18.912 2.891 10.004 6.194 -3.884 0.565 H22 A1IYL 53 A1IYL H23 H23 H 0 1 N N N N N N -19.162 2.076 8.423 4.832 -3.932 -0.591 H23 A1IYL 54 A1IYL H24 H24 H 0 1 N N N N N N -18.174 -0.044 17.047 -1.956 2.040 -1.138 H24 A1IYL 55 A1IYL H25 H25 H 0 1 N N N N N N -18.055 -1.367 19.114 -1.488 1.723 -3.552 H25 A1IYL 56 A1IYL H26 H26 H 0 1 N N N N N N -19.368 -2.429 18.503 0.249 1.957 -3.246 H26 A1IYL 57 A1IYL H27 H27 H 0 1 N N N N N N -17.789 -2.370 17.648 -0.592 0.543 -2.567 H27 A1IYL 58 A1IYL H28 H28 H 0 1 N N N N N N -16.727 2.494 8.419 7.112 -2.960 -1.562 H28 A1IYL 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IYL N4 C23 SING N N 1 A1IYL N4 C1 SING N N 2 A1IYL C23 C22 SING N N 3 A1IYL C1 O1 DOUB N N 4 A1IYL C1 C2 SING N N 5 A1IYL C22 C2 SING N N 6 A1IYL O4 C21 DOUB N N 7 A1IYL C2 C3 SING N N 8 A1IYL C3 C4 SING N N 9 A1IYL C21 C4 SING N N 10 A1IYL C4 N1 SING N N 11 A1IYL N1 C5 SING N N 12 A1IYL C10 C9 DOUB Y N 13 A1IYL C10 C11 SING Y N 14 A1IYL C9 C8 SING Y N 15 A1IYL O3 C5 DOUB N N 16 A1IYL C5 C6 SING N N 17 A1IYL O2 C7 DOUB N N 18 A1IYL C11 C12 DOUB Y N 19 A1IYL C7 C8 SING N N 20 A1IYL C7 N2 SING N N 21 A1IYL C8 C13 DOUB Y N 22 A1IYL N2 C6 SING N N 23 A1IYL C6 C17 SING N N 24 A1IYL C12 C13 SING Y N 25 A1IYL C12 C16 SING Y N 26 A1IYL C13 N3 SING Y N 27 A1IYL C17 C18 SING N N 28 A1IYL C16 C15 DOUB Y N 29 A1IYL N3 C14 DOUB Y N 30 A1IYL C18 C19 SING N N 31 A1IYL C18 C20 SING N N 32 A1IYL C14 C15 SING Y N 33 A1IYL C2 H1 SING N N 34 A1IYL C3 H2 SING N N 35 A1IYL C3 H3 SING N N 36 A1IYL C4 H4 SING N N 37 A1IYL C6 H5 SING N N 38 A1IYL N1 H6 SING N N 39 A1IYL C9 H7 SING N N 40 A1IYL C10 H8 SING N N 41 A1IYL C11 H9 SING N N 42 A1IYL C14 H10 SING N N 43 A1IYL N2 H11 SING N N 44 A1IYL C15 H12 SING N N 45 A1IYL C16 H13 SING N N 46 A1IYL C17 H14 SING N N 47 A1IYL C17 H15 SING N N 48 A1IYL C19 H16 SING N N 49 A1IYL C19 H17 SING N N 50 A1IYL C19 H18 SING N N 51 A1IYL C21 H19 SING N N 52 A1IYL C22 H20 SING N N 53 A1IYL C22 H21 SING N N 54 A1IYL C23 H22 SING N N 55 A1IYL C23 H23 SING N N 56 A1IYL C18 H24 SING N N 57 A1IYL C20 H25 SING N N 58 A1IYL C20 H26 SING N N 59 A1IYL C20 H27 SING N N 60 A1IYL N4 H28 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IYL InChI InChI 1.06 "InChI=1S/C23H28N4O4/c1-14(2)11-19(23(31)26-17(13-28)12-16-8-10-25-21(16)29)27-22(30)18-7-3-5-15-6-4-9-24-20(15)18/h3-7,9,13-14,16-17,19H,8,10-12H2,1-2H3,(H,25,29)(H,26,31)(H,27,30)/t16-,17-,19-/m0/s1" A1IYL InChIKey InChI 1.06 BECRDGNKPCGVAA-LNLFQRSKSA-N A1IYL SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)c1cccc2cccnc12)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=O" A1IYL SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)c1cccc2cccnc12)C(=O)N[CH](C[CH]3CCNC3=O)C=O" A1IYL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=O)NC(=O)c2cccc3c2nccc3" A1IYL SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=O)NC(=O)c2cccc3c2nccc3" # _pdbx_chem_comp_identifier.comp_id A1IYL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]quinoline-8-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IYL "Create component" 2025-01-14 PDBE A1IYL "Modify PCM" 2025-01-14 PDBE A1IYL "Initial release" 2025-04-23 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IYL _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C21 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #