data_A1IZI # _chem_comp.id A1IZI _chem_comp.name "(phenylmethyl) (2S)-5-[[N-[3-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propyl]-N-methyl-carbamimidoyl]amino]-2-(phenylmethoxycarbonylamino)pentanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H43 N9 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-22 _chem_comp.pdbx_modified_date 2026-01-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 689.761 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IZI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I0A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IZI C1 C1 C 0 1 N N N N N N 46.263 25.146 132.905 7.110 -3.283 -1.418 C1 A1IZI 1 A1IZI C21 C2 C 0 1 Y N N N N N 47.029 24.457 134.000 7.288 -4.709 -0.966 C24 A1IZI 2 A1IZI C22 C3 C 0 1 Y N N N N N 46.716 24.659 135.340 6.398 -5.682 -1.382 C3 A1IZI 3 A1IZI C23 C4 C 0 1 Y N N N N N 47.427 24.010 136.337 6.561 -6.991 -0.967 C25 A1IZI 4 A1IZI C24 C5 C 0 1 Y N N N N N 48.459 23.156 136.014 7.614 -7.326 -0.136 C26 A1IZI 5 A1IZI C25 C6 C 0 1 Y N N N N N 48.779 22.947 134.690 8.503 -6.354 0.280 C27 A1IZI 6 A1IZI C26 C7 C 0 1 Y N N N N N 48.073 23.594 133.688 8.344 -5.046 -0.140 C7 A1IZI 7 A1IZI CA C8 C 0 1 N N S N Y N 48.853 26.971 131.004 5.147 -0.485 0.212 CA A1IZI 8 A1IZI C9 C9 C 0 1 N N N N N N 47.522 27.894 129.185 5.961 1.803 0.007 C9 A1IZI 9 A1IZI C10 C10 C 0 1 N N N N N N 47.008 29.224 127.268 6.896 3.996 -0.095 C10 A1IZI 10 A1IZI C12 C11 C 0 1 Y N N N N N 45.058 28.801 125.739 5.853 6.268 0.019 C12 A1IZI 11 A1IZI C15 C12 C 0 1 Y N N N N N 43.423 30.424 127.253 6.778 6.895 -2.511 C15 A1IZI 12 A1IZI CZ C13 C 0 1 N N N N N N 52.675 30.157 131.833 -0.554 -0.731 2.694 CZ A1IZI 13 A1IZI CD C14 C 0 1 N N N N N N 52.583 27.906 130.803 1.538 -1.034 1.436 CD A1IZI 14 A1IZI CG C15 C 0 1 N N N N N N 51.260 27.338 130.358 2.923 -0.391 1.348 CG A1IZI 15 A1IZI CB C16 C 0 1 N N N N N N 50.260 27.288 131.503 3.761 -1.127 0.301 CB A1IZI 16 A1IZI C16 C17 C 0 1 Y N N N N N 44.742 30.232 127.622 7.063 5.661 -1.956 C16 A1IZI 17 A1IZI "C6'" C18 C 0 1 N N N N N N 52.703 33.978 132.247 -3.642 0.253 2.983 C23 A1IZI 18 A1IZI N N1 N 0 1 N N N Y Y N 48.326 28.090 130.243 5.018 0.886 -0.288 N A1IZI 19 A1IZI C C19 C 0 1 N N N N Y Y 47.942 26.636 132.170 6.012 -1.284 -0.728 C A1IZI 20 A1IZI O O1 O 0 1 N N N N Y Y 47.917 27.227 133.214 6.474 -0.762 -1.715 O A1IZI 21 A1IZI C11 C20 C 0 1 Y N N N N N 45.576 29.416 126.871 6.596 5.346 -0.694 C11 A1IZI 22 A1IZI C13 C21 C 0 1 Y N N N N N 43.738 28.995 125.372 5.573 7.504 -0.533 C13 A1IZI 23 A1IZI C14 C22 C 0 1 Y N N N N N 42.919 29.807 126.128 6.035 7.818 -1.798 C14 A1IZI 24 A1IZI CH1 C23 C 0 1 N N N N N N 52.644 32.015 130.253 -0.735 1.064 4.366 C21 A1IZI 25 A1IZI "C7'" C24 C 0 1 N N N N N N 52.760 32.509 132.699 -2.682 -0.498 3.907 C22 A1IZI 26 A1IZI "C5'" C25 C 0 1 N N N N N N 51.339 34.465 131.746 -5.077 -0.194 3.267 "C5'" A1IZI 27 A1IZI "C4'" C26 C 0 1 N N R N N N 50.985 35.893 132.132 -6.038 0.557 2.343 "C4'" A1IZI 28 A1IZI "C1'" C27 C 0 1 N N R N N N 50.392 37.709 130.811 -7.100 0.479 0.309 "C1'" A1IZI 29 A1IZI C8 C28 C 0 1 Y N N N N N 50.562 37.551 128.281 -6.676 -1.512 -1.182 C8 A1IZI 30 A1IZI C5 C29 C 0 1 Y N N N N N 50.771 39.592 127.730 -7.918 -1.052 -2.899 C5 A1IZI 31 A1IZI C6 C30 C 0 1 Y N N N N N 50.919 40.849 127.121 -8.634 -0.985 -4.107 C6 A1IZI 32 A1IZI C2 C31 C 0 1 Y N N N N N 50.846 41.765 129.244 -9.539 1.024 -3.420 C2 A1IZI 33 A1IZI C4 C32 C 0 1 Y N N N N N 50.672 39.568 129.112 -8.075 -0.004 -1.976 C4 A1IZI 34 A1IZI "C2'" C33 C 0 1 N N R N N N 49.120 36.905 131.027 -8.217 0.162 1.328 "C2'" A1IZI 35 A1IZI "C3'" C34 C 0 1 N N S N N N 49.493 36.185 132.323 -7.503 0.214 2.697 "C3'" A1IZI 36 A1IZI NE N2 N 0 1 N N N N N N 52.607 29.360 130.732 0.735 -0.329 2.439 NE A1IZI 37 A1IZI NH2 N3 N 0 1 N N N N N N 52.721 29.670 133.053 -1.063 -1.739 2.044 NH1 A1IZI 38 A1IZI NH1 N4 N 0 1 N N N N N N 52.696 31.523 131.615 -1.307 -0.069 3.635 NH2 A1IZI 39 A1IZI N9 N5 N 0 1 Y N N N N N 50.550 38.248 129.466 -7.276 -0.319 -0.906 N9 A1IZI 40 A1IZI N7 N6 N 0 1 Y N N N N N 50.700 38.303 127.223 -7.055 -1.940 -2.351 N7 A1IZI 41 A1IZI N6 N7 N 0 1 N N N N N N 51.026 41.028 125.800 -8.520 -1.988 -5.054 N6 A1IZI 42 A1IZI N1 N8 N 0 1 Y N N N N N 50.954 41.936 127.923 -9.424 0.062 -4.318 N1 A1IZI 43 A1IZI N3 N9 N 0 1 Y N N N N N 50.701 40.629 129.931 -8.889 1.004 -2.276 N3 A1IZI 44 A1IZI OXT O2 O 0 1 N N N N Y Y 47.179 25.590 131.874 6.269 -2.575 -0.469 OXT A1IZI 45 A1IZI O2 O3 O 0 1 N N N N N N 47.222 26.811 128.731 6.918 1.492 0.689 O2 A1IZI 46 A1IZI O3 O4 O 0 1 N N N N N N 47.073 29.074 128.714 5.843 3.062 -0.452 O3 A1IZI 47 A1IZI "O4'" O5 O 0 1 N N N N N N 51.441 36.800 131.094 -5.874 0.112 0.979 "O4'" A1IZI 48 A1IZI "O2'" O6 O 0 1 N N N N N N 47.980 37.746 131.171 -9.248 1.149 1.263 "O2'" A1IZI 49 A1IZI "O3'" O7 O 0 1 N N N N N N 49.277 37.029 133.447 -8.071 1.235 3.520 "O3'" A1IZI 50 A1IZI H5 H1 H 0 1 N N N N N N 45.732 26.015 133.321 8.084 -2.796 -1.475 H5 A1IZI 51 A1IZI H4 H2 H 0 1 N N N N N N 45.535 24.445 132.471 6.640 -3.269 -2.401 H4 A1IZI 52 A1IZI H6 H3 H 0 1 N N N N N N 45.911 25.328 135.606 5.575 -5.420 -2.030 H6 A1IZI 53 A1IZI H7 H4 H 0 1 N N N N N N 47.171 24.175 137.373 5.865 -7.751 -1.291 H7 A1IZI 54 A1IZI H1 H5 H 0 1 N N N N N N 49.013 22.654 136.793 7.740 -8.349 0.189 H1 A1IZI 55 A1IZI H9 H6 H 0 1 N N N N N N 49.584 22.275 134.432 9.326 -6.616 0.929 H9 A1IZI 56 A1IZI H10 H7 H 0 1 N N N N N N 48.337 23.426 132.654 9.042 -4.287 0.182 H10 A1IZI 57 A1IZI HA H8 H 0 1 N N N N Y N 48.913 26.089 130.350 5.604 -0.469 1.202 HA A1IZI 58 A1IZI H12 H9 H 0 1 N N N N N N 47.409 28.322 126.783 7.850 3.632 -0.478 H12 A1IZI 59 A1IZI H13 H10 H 0 1 N N N N N N 47.599 30.099 126.959 6.951 4.084 0.990 H13 A1IZI 60 A1IZI H14 H11 H 0 1 N N N N N N 45.692 28.165 125.139 5.489 6.022 1.005 H14 A1IZI 61 A1IZI H17 H12 H 0 1 N N N N N N 42.785 31.060 127.849 7.143 7.141 -3.497 H17 A1IZI 62 A1IZI HD3 H13 H 0 1 N N N N N N 52.769 27.599 131.843 1.045 -0.970 0.466 HD3 A1IZI 63 A1IZI HD2 H14 H 0 1 N N N N N N 53.377 27.506 130.155 1.640 -2.080 1.723 HD2 A1IZI 64 A1IZI HG2 H15 H 0 1 N N N N N N 50.852 27.969 129.555 2.821 0.655 1.061 HG2 A1IZI 65 A1IZI HG3 H16 H 0 1 N N N N N N 51.419 26.318 129.978 3.416 -0.455 2.318 HG3 A1IZI 66 A1IZI HB2 H17 H 0 1 N N N N N N 50.571 26.509 132.215 3.268 -1.063 -0.670 HB2 A1IZI 67 A1IZI HB3 H18 H 0 1 N N N N N N 50.248 28.264 132.010 3.864 -2.174 0.587 HB3 A1IZI 68 A1IZI H18 H19 H 0 1 N N N N N N 45.127 30.722 128.504 7.651 4.943 -2.510 H18 A1IZI 69 A1IZI H32 H20 H 0 1 N N N N N N 53.430 34.109 131.432 -3.554 1.325 3.161 H32 A1IZI 70 A1IZI H33 H21 H 0 1 N N N N N N 52.993 34.606 133.102 -3.392 0.035 1.945 H33 A1IZI 71 A1IZI H H22 H 0 1 N N N Y Y N 48.566 29.023 130.511 4.254 1.134 -0.832 H A1IZI 72 A1IZI H15 H23 H 0 1 N N N N N N 43.348 28.509 124.490 4.993 8.225 0.023 H15 A1IZI 73 A1IZI H16 H24 H 0 1 N N N N N N 41.889 29.959 125.840 5.816 8.783 -2.229 H16 A1IZI 74 A1IZI H27 H25 H 0 1 N N N N N N 52.669 33.115 130.259 -0.937 1.987 3.821 H27 A1IZI 75 A1IZI H29 H26 H 0 1 N N N N N N 53.509 31.631 129.691 -1.185 1.122 5.357 H29 A1IZI 76 A1IZI H28 H27 H 0 1 N N N N N N 51.715 31.672 129.775 0.342 0.928 4.463 H28 A1IZI 77 A1IZI H31 H28 H 0 1 N N N N N N 51.912 32.327 133.376 -2.931 -0.280 4.945 H31 A1IZI 78 A1IZI H30 H29 H 0 1 N N N N N N 53.703 32.356 133.244 -2.770 -1.569 3.729 H30 A1IZI 79 A1IZI "H5'" H30 H 0 1 N N N N N N 50.567 33.799 132.158 -5.166 -1.266 3.089 "H5'" A1IZI 80 A1IZI "H5''" H31 H 0 0 N N N N N N 51.335 34.397 130.648 -5.327 0.024 4.305 "H5''" A1IZI 81 A1IZI "H4'" H32 H 0 1 N N N N N N 51.503 36.133 133.072 -5.872 1.631 2.416 "H4'" A1IZI 82 A1IZI "H1'" H33 H 0 1 N N N N N N 50.408 38.535 131.537 -7.097 1.543 0.068 "H1'" A1IZI 83 A1IZI H8 H34 H 0 1 N N N N N N 50.466 36.477 128.230 -5.986 -2.024 -0.528 H8 A1IZI 84 A1IZI H2 H35 H 0 1 N N N N N N 50.881 42.668 129.836 -10.192 1.858 -3.632 H2 A1IZI 85 A1IZI "H2'" H36 H 0 1 N N N N N N 48.987 36.176 130.214 -8.628 -0.831 1.146 "H2'" A1IZI 86 A1IZI "H3'" H37 H 0 1 N N N N N N 48.932 35.243 132.408 -7.559 -0.754 3.194 "H3'" A1IZI 87 A1IZI HE H38 H 0 1 N N N N N N 52.572 29.794 129.832 1.114 0.422 2.923 HE A1IZI 88 A1IZI HH11 H40 H 0 0 N N N N N N 52.770 30.392 133.743 -1.973 -2.023 2.224 HH11 A1IZI 89 A1IZI H61 H41 H 0 1 N N N N N N 51.121 42.004 125.602 -7.940 -2.748 -4.888 H61 A1IZI 90 A1IZI H62 H42 H 0 1 N N N N N N 51.830 40.539 125.462 -9.019 -1.931 -5.883 H62 A1IZI 91 A1IZI "HO2'" H43 H 0 0 N N N N N N 47.206 37.211 131.304 -9.976 0.999 1.883 "HO2'" A1IZI 92 A1IZI "HO3'" H44 H 0 0 N N N N N N 49.514 36.566 134.242 -8.990 1.071 3.772 "HO3'" A1IZI 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IZI C13 C12 DOUB Y N 1 A1IZI C13 C14 SING Y N 2 A1IZI C12 C11 SING Y N 3 A1IZI N6 C6 SING N N 4 A1IZI C14 C15 DOUB Y N 5 A1IZI C11 C10 SING N N 6 A1IZI C11 C16 DOUB Y N 7 A1IZI C6 C5 SING Y N 8 A1IZI C6 N1 DOUB Y N 9 A1IZI N7 C5 SING Y N 10 A1IZI N7 C8 DOUB Y N 11 A1IZI C15 C16 SING Y N 12 A1IZI C10 O3 SING N N 13 A1IZI C5 C4 DOUB Y N 14 A1IZI N1 C2 SING Y N 15 A1IZI C8 N9 SING Y N 16 A1IZI O3 C9 SING N N 17 A1IZI O2 C9 DOUB N N 18 A1IZI C4 N9 SING Y N 19 A1IZI C4 N3 SING Y N 20 A1IZI C9 N SING N N 21 A1IZI C2 N3 DOUB Y N 22 A1IZI N9 "C1'" SING N N 23 A1IZI N CA SING N N 24 A1IZI CH1 NH1 SING N N 25 A1IZI CG CD SING N N 26 A1IZI CG CB SING N N 27 A1IZI NE CD SING N N 28 A1IZI NE CZ SING N N 29 A1IZI "C1'" "C2'" SING N N 30 A1IZI "C1'" "O4'" SING N N 31 A1IZI CA CB SING N N 32 A1IZI CA C SING N N 33 A1IZI "C2'" "O2'" SING N N 34 A1IZI "C2'" "C3'" SING N N 35 A1IZI "O4'" "C4'" SING N N 36 A1IZI NH1 CZ SING N N 37 A1IZI NH1 "C7'" SING N N 38 A1IZI "C5'" "C4'" SING N N 39 A1IZI "C5'" "C6'" SING N N 40 A1IZI CZ NH2 DOUB N N 41 A1IZI OXT C SING N N 42 A1IZI OXT C1 SING N N 43 A1IZI "C4'" "C3'" SING N N 44 A1IZI C O DOUB N N 45 A1IZI "C6'" "C7'" SING N N 46 A1IZI "C3'" "O3'" SING N N 47 A1IZI C1 C21 SING N N 48 A1IZI C26 C21 DOUB Y N 49 A1IZI C26 C25 SING Y N 50 A1IZI C21 C22 SING Y N 51 A1IZI C25 C24 DOUB Y N 52 A1IZI C22 C23 DOUB Y N 53 A1IZI C24 C23 SING Y N 54 A1IZI C1 H5 SING N N 55 A1IZI C1 H4 SING N N 56 A1IZI C22 H6 SING N N 57 A1IZI C23 H7 SING N N 58 A1IZI C24 H1 SING N N 59 A1IZI C25 H9 SING N N 60 A1IZI C26 H10 SING N N 61 A1IZI CA HA SING N N 62 A1IZI C10 H12 SING N N 63 A1IZI C10 H13 SING N N 64 A1IZI C12 H14 SING N N 65 A1IZI C15 H17 SING N N 66 A1IZI CD HD3 SING N N 67 A1IZI CD HD2 SING N N 68 A1IZI CG HG2 SING N N 69 A1IZI CG HG3 SING N N 70 A1IZI CB HB2 SING N N 71 A1IZI CB HB3 SING N N 72 A1IZI C16 H18 SING N N 73 A1IZI "C6'" H32 SING N N 74 A1IZI "C6'" H33 SING N N 75 A1IZI N H SING N N 76 A1IZI C13 H15 SING N N 77 A1IZI C14 H16 SING N N 78 A1IZI CH1 H27 SING N N 79 A1IZI CH1 H29 SING N N 80 A1IZI CH1 H28 SING N N 81 A1IZI "C7'" H31 SING N N 82 A1IZI "C7'" H30 SING N N 83 A1IZI "C5'" "H5'" SING N N 84 A1IZI "C5'" "H5''" SING N N 85 A1IZI "C4'" "H4'" SING N N 86 A1IZI "C1'" "H1'" SING N N 87 A1IZI C8 H8 SING N N 88 A1IZI C2 H2 SING N N 89 A1IZI "C2'" "H2'" SING N N 90 A1IZI "C3'" "H3'" SING N N 91 A1IZI NE HE SING N N 92 A1IZI NH2 HH11 SING N N 93 A1IZI N6 H61 SING N N 94 A1IZI N6 H62 SING N N 95 A1IZI "O2'" "HO2'" SING N N 96 A1IZI "O3'" "HO3'" SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IZI InChI InChI 1.06 "InChI=1S/C34H43N9O7/c1-42(17-9-15-25-27(44)28(45)31(50-25)43-21-40-26-29(35)38-20-39-30(26)43)33(36)37-16-8-14-24(32(46)48-18-22-10-4-2-5-11-22)41-34(47)49-19-23-12-6-3-7-13-23/h2-7,10-13,20-21,24-25,27-28,31,44-45H,8-9,14-19H2,1H3,(H2,36,37)(H,41,47)(H2,35,38,39)/t24-,25+,27+,28+,31+/m0/s1" A1IZI InChIKey InChI 1.06 WECWTWHQPVNAAT-CYZHESPZSA-N A1IZI SMILES_CANONICAL CACTVS 3.385 "CN(CCC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(=N)NCCC[C@H](NC(=O)OCc4ccccc4)C(=O)OCc5ccccc5" A1IZI SMILES CACTVS 3.385 "CN(CCC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(=N)NCCC[CH](NC(=O)OCc4ccccc4)C(=O)OCc5ccccc5" A1IZI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/NCCC[C@@H](C(=O)OCc1ccccc1)NC(=O)OCc2ccccc2)\N(C)CCC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" A1IZI SMILES "OpenEye OEToolkits" 2.0.7 "CN(CCCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)C(=N)NCCCC(C(=O)OCc4ccccc4)NC(=O)OCc5ccccc5" # _pdbx_chem_comp_identifier.comp_id A1IZI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(phenylmethyl) (2~{S})-5-[[~{N}-[3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propyl]-~{N}-methyl-carbamimidoyl]amino]-2-(phenylmethoxycarbonylamino)pentanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IZI "Create component" 2025-01-22 PDBE A1IZI "Modify atom id" 2025-01-28 PDBE A1IZI "Initial release" 2026-01-28 RCSB #