data_A1IZJ # _chem_comp.id A1IZJ _chem_comp.name "(5~{S})-5-[[[5-[2-chloranyl-3-[2-chloranyl-3-[6-methoxy-5-[[[(2~{S})-5-oxidanylidenepyrrolidin-2-yl]methylamino]methyl]pyrazin-2-yl]phenyl]phenyl]-3-methoxy-pyrazin-2-yl]methylamino]methyl]pyrrolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H36 Cl2 N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-22 _chem_comp.pdbx_modified_date 2025-06-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 691.607 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IZJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I0U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IZJ C15 C1 C 0 1 N N S N N N -5.558 20.622 22.097 7.171 -3.991 0.948 C15 A1IZJ 1 A1IZJ C16 C2 C 0 1 N N N N N N -4.461 20.863 21.059 7.986 -5.245 0.561 C16 A1IZJ 2 A1IZJ C17 C3 C 0 1 N N N N N N -3.227 21.135 21.854 6.927 -6.091 -0.182 C17 A1IZJ 3 A1IZJ C18 C4 C 0 1 N N N N N N -3.519 20.539 23.200 5.607 -5.610 0.378 C18 A1IZJ 4 A1IZJ C19 C5 C 0 1 Y N N N N N -6.932 11.930 21.086 1.631 3.460 -0.120 C19 A1IZJ 5 A1IZJ C20 C6 C 0 1 Y N N N N N -4.918 9.379 20.751 -1.026 5.504 -1.224 C20 A1IZJ 6 A1IZJ C21 C7 C 0 1 Y N N N N N -4.005 8.506 20.166 -2.310 5.508 -1.732 C21 A1IZJ 7 A1IZJ C22 C8 C 0 1 Y N N N N N -4.262 7.921 18.939 -3.205 4.522 -1.369 C22 A1IZJ 8 A1IZJ C23 C9 C 0 1 Y N N N N N -5.418 8.276 18.237 -2.817 3.514 -0.486 C23 A1IZJ 9 A1IZJ C24 C10 C 0 1 Y N N N N N -5.618 7.611 16.919 -3.781 2.458 -0.093 C24 A1IZJ 10 A1IZJ C25 C11 C 0 1 Y N N N N N -6.104 8.341 15.865 -5.076 2.468 -0.608 C25 A1IZJ 11 A1IZJ C26 C12 C 0 1 Y N N N N N -5.328 5.769 15.370 -4.274 0.556 1.096 C26 A1IZJ 12 A1IZJ C27 C13 C 0 1 N N N N N N -6.137 3.600 14.776 -2.557 -0.384 2.442 C27 A1IZJ 13 A1IZJ C28 C14 C 0 1 Y N N N N N -5.914 6.573 14.363 -5.567 0.574 0.581 C28 A1IZJ 14 A1IZJ CL1 CL1 CL 0 0 N N N N N N -7.777 9.669 18.101 -1.031 2.254 1.127 CL1 A1IZJ 15 A1IZJ CL2 CL2 CL 0 0 N N N N N N -5.526 12.595 20.393 1.107 2.164 -1.148 CL2 A1IZJ 16 A1IZJ C1 C15 C 0 1 Y N N N N N -6.317 9.179 18.845 -1.523 3.505 0.029 C1 A1IZJ 17 A1IZJ N1 N1 N 0 1 Y N N N N N -6.715 16.261 22.085 5.986 1.383 0.289 N1 A1IZJ 18 A1IZJ O1 O1 O 0 1 N N N N N N -8.941 15.906 24.949 3.903 -0.635 -1.815 O1 A1IZJ 19 A1IZJ C2 C16 C 0 1 Y N N N N N -6.110 9.725 20.112 -0.623 4.500 -0.346 C2 A1IZJ 20 A1IZJ N2 N2 N 0 1 Y N N N N N -8.356 14.455 23.278 3.464 1.365 -0.721 N2 A1IZJ 21 A1IZJ O2 O2 O 0 1 N N N N N N -2.705 20.325 24.099 4.551 -6.198 0.273 O2 A1IZJ 22 A1IZJ C3 C17 C 0 1 Y N N N N N -7.118 10.597 20.820 0.757 4.497 0.198 C3 A1IZJ 23 A1IZJ N3 N3 N 0 1 N N N N N N -7.351 19.168 22.851 6.418 -1.792 0.177 N3 A1IZJ 24 A1IZJ O3 O3 O 0 1 N N N N N N -5.020 4.503 14.937 -3.899 -0.427 1.953 O3 A1IZJ 25 A1IZJ C4 C18 C 0 1 Y N N N N N -8.273 10.025 21.337 1.182 5.533 1.029 C4 A1IZJ 26 A1IZJ N4 N4 N 0 1 N N N N N N -4.823 20.302 23.303 5.774 -4.435 1.010 N4 A1IZJ 27 A1IZJ O4 O4 O 0 1 N N N N N N -9.505 7.437 10.402 -4.814 -6.331 -0.670 O4 A1IZJ 28 A1IZJ C5 C19 C 0 1 Y N N N N N -9.196 10.733 22.069 2.467 5.532 1.537 C5 A1IZJ 29 A1IZJ N5 N5 N 0 1 Y N N N N N -6.265 7.825 14.641 -5.933 1.526 -0.258 N5 A1IZJ 30 A1IZJ C6 C20 C 0 1 Y N N N N N -8.976 12.057 22.339 3.338 4.506 1.225 C6 A1IZJ 31 A1IZJ N6 N6 N 0 1 Y N N N N N -5.176 6.331 16.689 -3.410 1.497 0.748 N6 A1IZJ 32 A1IZJ C7 C21 C 0 1 Y N N N N N -7.868 12.693 21.805 2.925 3.465 0.396 C7 A1IZJ 33 A1IZJ N7 N7 N 0 1 N N N N N N -5.843 5.075 12.245 -6.450 -1.624 0.040 N7 A1IZJ 34 A1IZJ C8 C22 C 0 1 Y N N N N N -7.684 14.099 22.179 3.860 2.362 0.067 C8 A1IZJ 35 A1IZJ N8 N8 N 0 1 N N N N N N -8.751 5.587 11.491 -5.879 -4.328 -0.635 N8 A1IZJ 36 A1IZJ C9 C23 C 0 1 Y N N N N N -6.815 15.004 21.617 5.155 2.367 0.582 C9 A1IZJ 37 A1IZJ C10 C24 C 0 1 Y N N N N N -8.238 15.697 23.795 4.303 0.382 -1.011 C10 A1IZJ 38 A1IZJ C11 C25 C 0 1 N N N N N N -10.259 15.259 25.113 2.564 -0.582 -2.312 C11 A1IZJ 39 A1IZJ C12 C26 C 0 1 Y N N N N N -7.459 16.639 23.124 5.594 0.394 -0.493 C12 A1IZJ 40 A1IZJ C13 C27 C 0 1 N N N N N N -7.134 18.010 23.666 6.547 -0.725 -0.825 C13 A1IZJ 41 A1IZJ C14 C28 C 0 1 N N N N N N -6.388 19.410 21.768 7.334 -2.902 -0.114 C14 A1IZJ 42 A1IZJ C29 C29 C 0 1 N N N N N N -6.245 6.309 12.908 -6.550 -0.497 0.978 C29 A1IZJ 43 A1IZJ C30 C30 C 0 1 N N N N N N -6.524 4.396 11.129 -7.396 -2.690 0.396 C30 A1IZJ 44 A1IZJ C31 C31 C 0 1 N N S N N N -8.051 4.336 11.210 -7.264 -3.843 -0.600 C31 A1IZJ 45 A1IZJ C32 C32 C 0 1 N N N N N N -8.537 4.079 9.776 -8.111 -5.049 -0.138 C32 A1IZJ 46 A1IZJ C33 C33 C 0 1 N N N N N N -8.646 5.488 9.191 -7.232 -6.241 -0.582 C33 A1IZJ 47 A1IZJ C34 C34 C 0 1 N N N N N N -8.959 6.330 10.402 -5.832 -5.671 -0.637 C34 A1IZJ 48 A1IZJ H1 H1 H 0 1 N N N N N N -6.187 21.516 22.219 7.492 -3.618 1.921 H1 A1IZJ 49 A1IZJ H2 H2 H 0 1 N N N N N N -4.711 21.727 20.426 8.812 -4.984 -0.101 H2 A1IZJ 50 A1IZJ H3 H3 H 0 1 N N N N N N -4.325 19.973 20.427 8.348 -5.764 1.449 H3 A1IZJ 51 A1IZJ H4 H4 H 0 1 N N N N N N -2.352 20.652 21.395 6.976 -5.907 -1.255 H4 A1IZJ 52 A1IZJ H5 H5 H 0 1 N N N N N N -3.047 22.217 21.937 7.068 -7.151 0.031 H5 A1IZJ 53 A1IZJ H6 H6 H 0 1 N N N N N N -4.699 9.798 21.722 -0.330 6.279 -1.512 H6 A1IZJ 54 A1IZJ H7 H7 H 0 1 N N N N N N -3.081 8.282 20.678 -2.616 6.286 -2.416 H7 A1IZJ 55 A1IZJ H8 H8 H 0 1 N N N N N N -3.576 7.196 18.527 -4.209 4.530 -1.768 H8 A1IZJ 56 A1IZJ H9 H9 H 0 1 N N N N N N -6.368 9.375 16.030 -5.378 3.245 -1.294 H9 A1IZJ 57 A1IZJ H10 H10 H 0 1 N N N N N N -5.772 2.623 14.428 -1.863 -0.447 1.603 H10 A1IZJ 58 A1IZJ H11 H11 H 0 1 N N N N N N -6.651 3.477 15.741 -2.395 0.550 2.978 H11 A1IZJ 59 A1IZJ H12 H12 H 0 1 N N N N N N -6.839 4.014 14.037 -2.389 -1.224 3.116 H12 A1IZJ 60 A1IZJ H13 H13 H 0 1 N N N N N N -7.337 19.967 23.452 5.465 -2.116 0.239 H13 A1IZJ 61 A1IZJ H15 H15 H 0 1 N N N N N N -8.454 8.976 21.156 0.506 6.338 1.276 H15 A1IZJ 62 A1IZJ H16 H16 H 0 1 N N N N N N -5.253 19.939 24.130 5.062 -3.944 1.450 H16 A1IZJ 63 A1IZJ H17 H17 H 0 1 N N N N N N -10.091 10.247 22.430 2.791 6.337 2.180 H17 A1IZJ 64 A1IZJ H18 H18 H 0 1 N N N N N N -9.664 12.604 22.966 4.341 4.512 1.625 H18 A1IZJ 65 A1IZJ H19 H19 H 0 1 N N N N N N -5.806 4.393 12.975 -5.506 -1.977 -0.002 H19 A1IZJ 66 A1IZJ H21 H21 H 0 1 N N N N N N -9.045 5.859 12.407 -5.098 -3.753 -0.657 H21 A1IZJ 67 A1IZJ H22 H22 H 0 1 N N N N N N -6.200 14.699 20.783 5.478 3.175 1.221 H22 A1IZJ 68 A1IZJ H23 H23 H 0 1 N N N N N N -10.683 15.532 26.091 2.431 0.326 -2.901 H23 A1IZJ 69 A1IZJ H24 H24 H 0 1 N N N N N N -10.935 15.597 24.314 2.375 -1.453 -2.939 H24 A1IZJ 70 A1IZJ H25 H25 H 0 1 N N N N N N -10.141 14.167 25.056 1.866 -0.578 -1.475 H25 A1IZJ 71 A1IZJ H26 H26 H 0 1 N N N N N N -6.066 18.003 23.931 7.569 -0.345 -0.821 H26 A1IZJ 72 A1IZJ H27 H27 H 0 1 N N N N N N -7.737 18.144 24.576 6.311 -1.124 -1.811 H27 A1IZJ 73 A1IZJ H28 H28 H 0 1 N N N N N N -6.930 19.581 20.826 8.362 -2.537 -0.106 H28 A1IZJ 74 A1IZJ H29 H29 H 0 1 N N N N N N -5.731 18.534 21.659 7.104 -3.315 -1.096 H29 A1IZJ 75 A1IZJ H30 H30 H 0 1 N N N N N N -5.793 7.131 12.333 -6.323 -0.843 1.986 H30 A1IZJ 76 A1IZJ H31 H31 H 0 1 N N N N N N -7.341 6.363 12.825 -7.561 -0.091 0.951 H31 A1IZJ 77 A1IZJ H32 H32 H 0 1 N N N N N N -6.149 3.363 11.085 -7.175 -3.051 1.401 H32 A1IZJ 78 A1IZJ H33 H33 H 0 1 N N N N N N -6.257 4.923 10.201 -8.413 -2.299 0.366 H33 A1IZJ 79 A1IZJ H34 H34 H 0 1 N N N N N N -8.375 3.527 11.881 -7.575 -3.520 -1.594 H34 A1IZJ 80 A1IZJ H35 H35 H 0 1 N N N N N N -9.514 3.574 9.774 -8.241 -5.043 0.944 H35 A1IZJ 81 A1IZJ H36 H36 H 0 1 N N N N N N -7.810 3.473 9.215 -9.076 -5.065 -0.645 H36 A1IZJ 82 A1IZJ H37 H37 H 0 1 N N N N N N -7.698 5.799 8.727 -7.290 -7.050 0.146 H37 A1IZJ 83 A1IZJ H38 H38 H 0 1 N N N N N N -9.455 5.547 8.448 -7.536 -6.592 -1.569 H38 A1IZJ 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IZJ C33 C32 SING N N 1 A1IZJ C33 C34 SING N N 2 A1IZJ C32 C31 SING N N 3 A1IZJ C34 O4 DOUB N N 4 A1IZJ C34 N8 SING N N 5 A1IZJ C30 C31 SING N N 6 A1IZJ C30 N7 SING N N 7 A1IZJ C31 N8 SING N N 8 A1IZJ N7 C29 SING N N 9 A1IZJ C29 C28 SING N N 10 A1IZJ C28 N5 DOUB Y N 11 A1IZJ C28 C26 SING Y N 12 A1IZJ N5 C25 SING Y N 13 A1IZJ C27 O3 SING N N 14 A1IZJ O3 C26 SING N N 15 A1IZJ C26 N6 DOUB Y N 16 A1IZJ C25 C24 DOUB Y N 17 A1IZJ N6 C24 SING Y N 18 A1IZJ C24 C23 SING N N 19 A1IZJ CL1 C1 SING N N 20 A1IZJ C23 C1 DOUB Y N 21 A1IZJ C23 C22 SING Y N 22 A1IZJ C1 C2 SING Y N 23 A1IZJ C22 C21 DOUB Y N 24 A1IZJ C2 C20 DOUB Y N 25 A1IZJ C2 C3 SING N N 26 A1IZJ C21 C20 SING Y N 27 A1IZJ CL2 C19 SING N N 28 A1IZJ C3 C19 DOUB Y N 29 A1IZJ C3 C4 SING Y N 30 A1IZJ C16 C17 SING N N 31 A1IZJ C16 C15 SING N N 32 A1IZJ C19 C7 SING Y N 33 A1IZJ C4 C5 DOUB Y N 34 A1IZJ C9 N1 DOUB Y N 35 A1IZJ C9 C8 SING Y N 36 A1IZJ C14 C15 SING N N 37 A1IZJ C14 N3 SING N N 38 A1IZJ C7 C8 SING N N 39 A1IZJ C7 C6 DOUB Y N 40 A1IZJ C17 C18 SING N N 41 A1IZJ C5 C6 SING Y N 42 A1IZJ N1 C12 SING Y N 43 A1IZJ C15 N4 SING N N 44 A1IZJ C8 N2 DOUB Y N 45 A1IZJ N3 C13 SING N N 46 A1IZJ C12 C13 SING N N 47 A1IZJ C12 C10 DOUB Y N 48 A1IZJ C18 N4 SING N N 49 A1IZJ C18 O2 DOUB N N 50 A1IZJ N2 C10 SING Y N 51 A1IZJ C10 O1 SING N N 52 A1IZJ O1 C11 SING N N 53 A1IZJ C15 H1 SING N N 54 A1IZJ C16 H2 SING N N 55 A1IZJ C16 H3 SING N N 56 A1IZJ C17 H4 SING N N 57 A1IZJ C17 H5 SING N N 58 A1IZJ C20 H6 SING N N 59 A1IZJ C21 H7 SING N N 60 A1IZJ C22 H8 SING N N 61 A1IZJ C25 H9 SING N N 62 A1IZJ C27 H10 SING N N 63 A1IZJ C27 H11 SING N N 64 A1IZJ C27 H12 SING N N 65 A1IZJ N3 H13 SING N N 66 A1IZJ C4 H15 SING N N 67 A1IZJ N4 H16 SING N N 68 A1IZJ C5 H17 SING N N 69 A1IZJ C6 H18 SING N N 70 A1IZJ N7 H19 SING N N 71 A1IZJ N8 H21 SING N N 72 A1IZJ C9 H22 SING N N 73 A1IZJ C11 H23 SING N N 74 A1IZJ C11 H24 SING N N 75 A1IZJ C11 H25 SING N N 76 A1IZJ C13 H26 SING N N 77 A1IZJ C13 H27 SING N N 78 A1IZJ C14 H28 SING N N 79 A1IZJ C14 H29 SING N N 80 A1IZJ C29 H30 SING N N 81 A1IZJ C29 H31 SING N N 82 A1IZJ C30 H32 SING N N 83 A1IZJ C30 H33 SING N N 84 A1IZJ C31 H34 SING N N 85 A1IZJ C32 H35 SING N N 86 A1IZJ C32 H36 SING N N 87 A1IZJ C33 H37 SING N N 88 A1IZJ C33 H38 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IZJ InChI InChI 1.06 "InChI=1S/C34H36Cl2N8O4/c1-47-33-27(15-37-13-19-9-11-29(45)41-19)39-17-25(43-33)23-7-3-5-21(31(23)35)22-6-4-8-24(32(22)36)26-18-40-28(34(44-26)48-2)16-38-14-20-10-12-30(46)42-20/h3-8,17-20,37-38H,9-16H2,1-2H3,(H,41,45)(H,42,46)/t19-,20-/m0/s1" A1IZJ InChIKey InChI 1.06 OIIOPWHTJZYKIL-PMACEKPBSA-N A1IZJ SMILES_CANONICAL CACTVS 3.385 "COc1nc(cnc1CNC[C@@H]2CCC(=O)N2)c3cccc(c3Cl)c4cccc(c4Cl)c5cnc(CNC[C@@H]6CCC(=O)N6)c(OC)n5" A1IZJ SMILES CACTVS 3.385 "COc1nc(cnc1CNC[CH]2CCC(=O)N2)c3cccc(c3Cl)c4cccc(c4Cl)c5cnc(CNC[CH]6CCC(=O)N6)c(OC)n5" A1IZJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1c(ncc(n1)c2cccc(c2Cl)c3cccc(c3Cl)c4cnc(c(n4)OC)CNC[C@@H]5CCC(=O)N5)CNC[C@@H]6CCC(=O)N6" A1IZJ SMILES "OpenEye OEToolkits" 2.0.7 "COc1c(ncc(n1)c2cccc(c2Cl)c3cccc(c3Cl)c4cnc(c(n4)OC)CNCC5CCC(=O)N5)CNCC6CCC(=O)N6" # _pdbx_chem_comp_identifier.comp_id A1IZJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{S})-5-[[[5-[2-chloranyl-3-[2-chloranyl-3-[6-methoxy-5-[[[(2~{S})-5-oxidanylidenepyrrolidin-2-yl]methylamino]methyl]pyrazin-2-yl]phenyl]phenyl]-3-methoxy-pyrazin-2-yl]methylamino]methyl]pyrrolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IZJ "Create component" 2025-01-22 PDBE A1IZJ "Initial release" 2025-06-18 RCSB #