data_A1IZK # _chem_comp.id A1IZK _chem_comp.name "1-[4-(3-methyl-4-phenyl-phenyl)carbonyl-1,4-diazepan-1-yl]ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-22 _chem_comp.pdbx_modified_date 2025-05-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.427 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IZK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I0T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IZK C4 C1 C 0 1 N N N N N N -8.420 28.890 -24.781 2.313 0.990 -1.539 C4 A1IZK 1 A1IZK C14 C2 C 0 1 Y N N N N N -3.414 33.623 -17.977 -6.738 0.810 0.015 C14 A1IZK 2 A1IZK C5 C3 C 0 1 N N N N N N -9.070 30.229 -24.437 1.788 -0.369 -1.745 C5 A1IZK 3 A1IZK C6 C4 C 0 1 N N N N N N -10.281 30.394 -22.276 1.406 -1.605 0.337 C6 A1IZK 4 A1IZK C11 C5 C 0 1 Y N N N N N -5.600 32.529 -19.411 -4.087 0.020 0.126 C11 A1IZK 5 A1IZK C7 C6 C 0 1 Y N N N N N -9.042 30.933 -21.549 -0.009 -1.187 0.282 C7 A1IZK 6 A1IZK C8 C7 C 0 1 Y N N N N N -8.829 32.444 -21.464 -1.020 -2.098 0.599 C8 A1IZK 7 A1IZK C9 C8 C 0 1 Y N N N N N -7.784 32.908 -20.823 -2.339 -1.706 0.548 C9 A1IZK 8 A1IZK C10 C9 C 0 1 Y N N N N N -6.798 31.953 -20.160 -2.666 -0.401 0.181 C10 A1IZK 9 A1IZK C12 C10 C 0 1 Y N N N N N -5.736 32.831 -18.132 -5.019 -0.753 -0.566 C12 A1IZK 10 A1IZK C13 C11 C 0 1 Y N N N N N -4.560 33.415 -17.358 -6.340 -0.356 -0.613 C13 A1IZK 11 A1IZK N1 N1 N 0 1 N N N N N N -10.363 27.436 -24.230 4.253 0.554 -0.186 N1 A1IZK 12 A1IZK N2 N2 N 0 1 N N N N N N -10.301 30.056 -23.693 2.247 -1.269 -0.661 N2 A1IZK 13 A1IZK C3 C12 C 0 1 N N N N N N -9.400 27.820 -25.246 3.850 1.007 -1.486 C3 A1IZK 14 A1IZK C1 C13 C 0 1 N N N N N N -10.911 25.799 -22.319 3.903 2.874 0.597 C1 A1IZK 15 A1IZK C15 C14 C 0 1 Y N N N N N -3.257 33.279 -19.456 -5.816 1.586 0.694 C15 A1IZK 16 A1IZK C16 C15 C 0 1 Y N N N N N -4.274 32.780 -20.128 -4.493 1.197 0.752 C16 A1IZK 17 A1IZK C17 C16 C 0 1 Y N N N N N -6.990 30.652 -20.218 -1.658 0.509 -0.136 C17 A1IZK 18 A1IZK C18 C17 C 0 1 N N N N N N -5.997 29.709 -19.554 -2.012 1.919 -0.533 C18 A1IZK 19 A1IZK C19 C18 C 0 1 Y N N N N N -8.202 30.103 -20.965 -0.338 0.122 -0.080 C19 A1IZK 20 A1IZK C2 C19 C 0 1 N N N N N N -9.967 26.313 -23.414 4.339 1.449 0.819 C2 A1IZK 21 A1IZK C20 C20 C 0 1 N N N N N N -11.577 29.551 -24.165 3.588 -1.784 -0.673 C20 A1IZK 22 A1IZK C21 C21 C 0 1 N N N N N N -11.650 28.041 -23.933 4.580 -0.871 0.090 C21 A1IZK 23 A1IZK O1 O1 O 0 1 N N N N N N -8.921 25.792 -23.641 4.766 1.107 1.901 O1 A1IZK 24 A1IZK O2 O2 O 0 1 N N N N N N -11.272 30.261 -21.631 1.813 -2.253 1.282 O2 A1IZK 25 A1IZK H7 H1 H 0 1 N N N N N N -7.903 28.518 -23.885 1.979 1.628 -2.357 H7 A1IZK 26 A1IZK H6 H2 H 0 1 N N N N N N -7.687 29.059 -25.584 1.922 1.383 -0.600 H6 A1IZK 27 A1IZK H14 H3 H 0 1 N N N N N N -2.580 34.040 -17.433 -7.772 1.118 -0.029 H14 A1IZK 28 A1IZK H9 H4 H 0 1 N N N N N N -8.368 30.820 -23.831 0.698 -0.338 -1.750 H9 A1IZK 29 A1IZK H8 H5 H 0 1 N N N N N N -9.291 30.767 -25.370 2.140 -0.750 -2.704 H8 A1IZK 30 A1IZK H10 H6 H 0 1 N N N N N N -9.531 33.122 -21.927 -0.768 -3.109 0.882 H10 A1IZK 31 A1IZK H11 H7 H 0 1 N N N N N N -7.620 33.974 -20.764 -3.121 -2.410 0.793 H11 A1IZK 32 A1IZK H12 H8 H 0 1 N N N N N N -6.680 32.664 -17.635 -4.710 -1.665 -1.053 H12 A1IZK 33 A1IZK H13 H9 H 0 1 N N N N N N -4.664 33.657 -16.311 -7.065 -0.958 -1.142 H13 A1IZK 34 A1IZK H4 H10 H 0 1 N N N N N N -9.949 28.206 -26.118 4.253 0.341 -2.249 H4 A1IZK 35 A1IZK H5 H11 H 0 1 N N N N N N -8.828 26.927 -25.539 4.213 2.021 -1.652 H5 A1IZK 36 A1IZK H2 H12 H 0 1 N N N N N N -10.461 24.924 -21.828 2.827 2.954 0.751 H2 A1IZK 37 A1IZK H1 H13 H 0 1 N N N N N N -11.076 26.592 -21.575 4.420 3.526 1.302 H1 A1IZK 38 A1IZK H3 H14 H 0 1 N N N N N N -11.873 25.513 -22.769 4.147 3.175 -0.422 H3 A1IZK 39 A1IZK H15 H15 H 0 1 N N N N N N -2.312 33.445 -19.951 -6.131 2.498 1.178 H15 A1IZK 40 A1IZK H16 H16 H 0 1 N N N N N N -4.172 32.550 -21.178 -3.775 1.799 1.290 H16 A1IZK 41 A1IZK H19 H17 H 0 1 N N N N N N -6.309 29.519 -18.516 -2.050 2.549 0.356 H19 A1IZK 42 A1IZK H18 H18 H 0 1 N N N N N N -5.967 28.759 -20.108 -1.258 2.304 -1.219 H18 A1IZK 43 A1IZK H17 H19 H 0 1 N N N N N N -4.997 30.167 -19.558 -2.986 1.924 -1.024 H17 A1IZK 44 A1IZK H20 H20 H 0 1 N N N N N N -8.371 29.037 -21.015 0.443 0.826 -0.325 H20 A1IZK 45 A1IZK H21 H21 H 0 1 N N N N N N -11.679 29.761 -25.240 3.592 -2.771 -0.211 H21 A1IZK 46 A1IZK H22 H22 H 0 1 N N N N N N -12.392 30.045 -23.616 3.921 -1.879 -1.707 H22 A1IZK 47 A1IZK H24 H23 H 0 1 N N N N N N -11.912 27.845 -22.883 5.597 -1.081 -0.242 H24 A1IZK 48 A1IZK H23 H24 H 0 1 N N N N N N -12.418 27.607 -24.590 4.500 -1.061 1.160 H23 A1IZK 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IZK C1 C2 SING N N 1 A1IZK C10 C11 SING N N 2 A1IZK C10 C17 DOUB Y N 3 A1IZK C10 C9 SING Y N 4 A1IZK C11 C12 DOUB Y N 5 A1IZK C11 C16 SING Y N 6 A1IZK C12 C13 SING Y N 7 A1IZK C13 C14 DOUB Y N 8 A1IZK C14 C15 SING Y N 9 A1IZK C15 C16 DOUB Y N 10 A1IZK C17 C18 SING N N 11 A1IZK C17 C19 SING Y N 12 A1IZK C19 C7 DOUB Y N 13 A1IZK C2 N1 SING N N 14 A1IZK C2 O1 DOUB N N 15 A1IZK C20 C21 SING N N 16 A1IZK C20 N2 SING N N 17 A1IZK C21 N1 SING N N 18 A1IZK C3 C4 SING N N 19 A1IZK C3 N1 SING N N 20 A1IZK C4 C5 SING N N 21 A1IZK C5 N2 SING N N 22 A1IZK C6 C7 SING N N 23 A1IZK C6 N2 SING N N 24 A1IZK C6 O2 DOUB N N 25 A1IZK C7 C8 SING Y N 26 A1IZK C8 C9 DOUB Y N 27 A1IZK C4 H7 SING N N 28 A1IZK C4 H6 SING N N 29 A1IZK C14 H14 SING N N 30 A1IZK C5 H9 SING N N 31 A1IZK C5 H8 SING N N 32 A1IZK C8 H10 SING N N 33 A1IZK C9 H11 SING N N 34 A1IZK C12 H12 SING N N 35 A1IZK C13 H13 SING N N 36 A1IZK C3 H4 SING N N 37 A1IZK C3 H5 SING N N 38 A1IZK C1 H2 SING N N 39 A1IZK C1 H1 SING N N 40 A1IZK C1 H3 SING N N 41 A1IZK C15 H15 SING N N 42 A1IZK C16 H16 SING N N 43 A1IZK C18 H19 SING N N 44 A1IZK C18 H18 SING N N 45 A1IZK C18 H17 SING N N 46 A1IZK C19 H20 SING N N 47 A1IZK C20 H21 SING N N 48 A1IZK C20 H22 SING N N 49 A1IZK C21 H24 SING N N 50 A1IZK C21 H23 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IZK InChI InChI 1.06 "InChI=1S/C21H24N2O2/c1-16-15-19(9-10-20(16)18-7-4-3-5-8-18)21(25)23-12-6-11-22(13-14-23)17(2)24/h3-5,7-10,15H,6,11-14H2,1-2H3" A1IZK InChIKey InChI 1.06 FIBAYMYQCFMKFA-UHFFFAOYSA-N A1IZK SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CCCN(CC1)C(=O)c2ccc(c(C)c2)c3ccccc3" A1IZK SMILES CACTVS 3.385 "CC(=O)N1CCCN(CC1)C(=O)c2ccc(c(C)c2)c3ccccc3" A1IZK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1c2ccccc2)C(=O)N3CCCN(CC3)C(=O)C" A1IZK SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1c2ccccc2)C(=O)N3CCCN(CC3)C(=O)C" # _pdbx_chem_comp_identifier.comp_id A1IZK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[4-(3-methyl-4-phenyl-phenyl)carbonyl-1,4-diazepan-1-yl]ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IZK "Create component" 2025-01-22 PDBE A1IZK "Modify PCM" 2025-01-23 PDBE A1IZK "Initial release" 2025-05-21 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1IZK _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #