data_A1IZP # _chem_comp.id A1IZP _chem_comp.name "(3~{R})-1-[[7-(iminomethyl)-2-[2-methyl-3-[2-methyl-3-[[3-[[(3~{R})-3-oxidanylpyrrolidin-1-yl]methyl]-1,7-naphthyridin-8-yl]amino]phenyl]phenyl]-1,3-benzoxazol-5-yl]methyl]pyrrolidine-3-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C41 H41 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-23 _chem_comp.pdbx_modified_date 2025-06-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 695.809 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1IZP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9I0W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1IZP C15 C1 C 0 1 Y N N N N N -20.126 14.953 5.539 -7.192 1.004 0.133 C15 A1IZP 1 A1IZP C16 C2 C 0 1 Y N N N N N -19.728 14.957 4.166 -5.804 0.944 -0.141 C16 A1IZP 2 A1IZP C17 C3 C 0 1 Y N N N N N -18.023 16.436 4.533 -6.062 -1.107 -1.159 C17 A1IZP 3 A1IZP C18 C4 C 0 1 Y N N N N N -18.349 16.523 5.920 -7.435 -1.109 -0.925 C18 A1IZP 4 A1IZP C19 C5 C 0 1 N N N N N N -17.579 17.365 6.893 -8.277 -2.271 -1.385 C19 A1IZP 5 A1IZP C20 C6 C 0 1 N N N N N N -15.110 17.152 6.966 -7.035 -3.946 -0.138 C20 A1IZP 6 A1IZP C21 C7 C 0 1 N N N N N N -14.074 16.427 7.837 -7.385 -5.401 0.263 C21 A1IZP 7 A1IZP C22 C8 C 0 1 N N R N N N -14.891 15.332 8.534 -8.639 -5.674 -0.608 C22 A1IZP 8 A1IZP C23 C9 C 0 1 N N N N N N -16.227 15.308 7.826 -9.355 -4.307 -0.625 C23 A1IZP 9 A1IZP C24 C10 C 0 1 Y N N N N N -19.387 15.767 6.415 -8.018 -0.055 -0.278 C24 A1IZP 10 A1IZP C25 C11 C 0 1 Y N N N N N -21.995 13.131 0.856 -3.251 3.761 1.645 C25 A1IZP 11 A1IZP C26 C12 C 0 1 Y N N N N N -22.500 12.383 -0.241 -2.441 4.742 2.183 C26 A1IZP 12 A1IZP C27 C13 C 0 1 Y N N N N N -21.695 12.129 -1.357 -1.187 4.975 1.654 C27 A1IZP 13 A1IZP C28 C14 C 0 1 N N N N N N -18.351 13.674 -0.196 -1.067 2.409 -1.137 C28 A1IZP 14 A1IZP N1 N1 N 0 1 N N N N N N -18.784 9.073 -9.075 7.650 3.188 -2.103 N1 A1IZP 15 A1IZP C1 C15 C 0 1 N N N N N N -19.078 10.018 -9.657 8.059 2.066 -1.603 C1 A1IZP 16 A1IZP C2 C16 C 0 1 Y N N N N N -19.368 11.408 -9.789 7.164 1.274 -0.740 C2 A1IZP 17 A1IZP C3 C17 C 0 1 Y N N N N N -19.360 11.797 -8.404 5.871 1.731 -0.459 C3 A1IZP 18 A1IZP C4 C18 C 0 1 Y N N N N N -19.638 13.115 -8.118 5.028 0.967 0.363 C4 A1IZP 19 A1IZP N2 N2 N 0 1 Y N N N N N -19.627 13.283 -6.734 3.856 1.648 0.458 N2 A1IZP 20 A1IZP C5 C19 C 0 1 Y N N N N N -19.252 12.155 -6.260 3.951 2.747 -0.245 C5 A1IZP 21 A1IZP C6 C20 C 0 1 Y N N N N N -19.102 11.785 -4.883 2.879 3.755 -0.391 C6 A1IZP 22 A1IZP C7 C21 C 0 1 Y N N N N N -19.795 12.453 -3.861 1.616 3.514 0.146 C7 A1IZP 23 A1IZP C8 C22 C 0 1 Y N N N N N -19.568 12.026 -2.528 0.613 4.468 0.004 C8 A1IZP 24 A1IZP C9 C23 C 0 1 Y N N N N N -20.340 12.539 -1.353 -0.735 4.219 0.574 C9 A1IZP 25 A1IZP C10 C24 C 0 1 Y N N N N N -19.791 13.237 -0.225 -1.550 3.230 0.031 C10 A1IZP 26 A1IZP C11 C25 C 0 1 Y N N N N N -20.650 13.569 0.856 -2.806 2.998 0.571 C11 A1IZP 27 A1IZP N3 N3 N 0 1 N N N N N N -20.072 14.267 1.956 -3.628 2.006 0.030 N3 A1IZP 28 A1IZP C12 C26 C 0 1 Y N N N N N -20.482 14.206 3.250 -4.992 2.025 0.278 C12 A1IZP 29 A1IZP N4 N4 N 0 1 Y N N N N N -21.505 13.443 3.697 -5.536 3.049 0.904 N4 A1IZP 30 A1IZP C13 C27 C 0 1 Y N N N N N -21.867 13.451 5.031 -6.834 3.122 1.167 C13 A1IZP 31 A1IZP C14 C28 C 0 1 Y N N N N N -21.227 14.185 5.976 -7.696 2.133 0.806 C14 A1IZP 32 A1IZP N5 N5 N 0 1 Y N N N N N -18.678 15.676 3.669 -5.297 -0.112 -0.776 N5 A1IZP 33 A1IZP N6 N6 N 0 1 N N N N N N -16.409 16.735 7.534 -8.343 -3.280 -0.319 N6 A1IZP 34 A1IZP O1 O1 O 0 1 N N N N N N -15.127 15.933 9.776 -9.466 -6.671 -0.005 O1 A1IZP 35 A1IZP C29 C29 C 0 1 Y N N N N N -18.733 10.929 -2.275 0.876 5.658 -0.673 C29 A1IZP 36 A1IZP C30 C30 C 0 1 Y N N N N N -18.066 10.280 -3.298 2.130 5.892 -1.204 C30 A1IZP 37 A1IZP C31 C31 C 0 1 Y N N N N N -18.265 10.689 -4.603 3.132 4.953 -1.063 C31 A1IZP 38 A1IZP C32 C32 C 0 1 N N N N N N -20.661 13.671 -4.118 1.337 2.226 0.877 C32 A1IZP 39 A1IZP O2 O2 O 0 1 Y N N N N N -19.123 11.125 -7.201 5.168 2.826 -0.816 O2 A1IZP 40 A1IZP C33 C33 C 0 1 Y N N N N N -19.887 14.046 -9.121 5.486 -0.241 0.894 C33 A1IZP 41 A1IZP C34 C34 C 0 1 Y N N N N N -19.890 13.661 -10.456 6.762 -0.681 0.610 C34 A1IZP 42 A1IZP C35 C35 C 0 1 N N N N N N -20.211 14.806 -11.372 7.247 -1.986 1.187 C35 A1IZP 43 A1IZP N7 N7 N 0 1 N N N N N N -20.820 14.422 -12.637 6.926 -3.080 0.261 N7 A1IZP 44 A1IZP C36 C36 C 0 1 N N N N N N -22.172 13.863 -12.598 7.589 -4.332 0.671 C36 A1IZP 45 A1IZP C37 C37 C 0 1 N N R N N N -22.940 15.143 -12.895 6.486 -5.395 0.854 C37 A1IZP 46 A1IZP C38 C38 C 0 1 N N N N N N -22.209 15.724 -14.069 5.322 -4.843 -0.011 C38 A1IZP 47 A1IZP C39 C39 C 0 1 N N N N N N -20.777 15.563 -13.569 5.468 -3.316 0.206 C39 A1IZP 48 A1IZP C40 C40 C 0 1 N N N N N N -24.410 14.906 -13.106 6.947 -6.735 0.341 C40 A1IZP 49 A1IZP O3 O3 O 0 1 N N N N N N -25.157 15.912 -13.011 6.130 -7.797 0.409 O3 A1IZP 50 A1IZP O4 O4 O 0 1 N N N N N N -24.775 13.717 -13.299 8.053 -6.853 -0.131 O4 A1IZP 51 A1IZP C41 C41 C 0 1 Y N N N N N -19.617 12.340 -10.813 7.598 0.061 -0.204 C41 A1IZP 52 A1IZP H1 H1 H 0 1 N N N N N N -17.194 17.024 4.167 -5.615 -1.946 -1.671 H1 A1IZP 53 A1IZP H2 H2 H 0 1 N N N N N N -17.224 18.256 6.355 -9.283 -1.922 -1.617 H2 A1IZP 54 A1IZP H3 H3 H 0 1 N N N N N N -18.272 17.670 7.691 -7.831 -2.713 -2.276 H3 A1IZP 55 A1IZP H4 H4 H 0 1 N N N N N N -15.024 16.839 5.915 -6.468 -3.460 0.655 H4 A1IZP 56 A1IZP H5 H5 H 0 1 N N N N N N -14.985 18.243 7.036 -6.472 -3.935 -1.071 H5 A1IZP 57 A1IZP H6 H6 H 0 1 N N N N N N -13.278 15.989 7.217 -6.574 -6.083 0.006 H6 A1IZP 58 A1IZP H7 H7 H 0 1 N N N N N N -13.630 17.114 8.573 -7.625 -5.466 1.325 H7 A1IZP 59 A1IZP H8 H8 H 0 1 N N N N N N -14.384 14.356 8.561 -8.350 -5.973 -1.616 H8 A1IZP 60 A1IZP H9 H9 H 0 1 N N N N N N -17.024 14.923 8.479 -9.782 -4.124 -1.611 H9 A1IZP 61 A1IZP H10 H10 H 0 1 N N N N N N -16.186 14.708 6.905 -10.142 -4.292 0.129 H10 A1IZP 62 A1IZP H11 H11 H 0 1 N N N N N N -19.631 15.799 7.466 -9.081 -0.038 -0.089 H11 A1IZP 63 A1IZP H12 H12 H 0 1 N N N N N N -22.639 13.366 1.691 -4.231 3.582 2.063 H12 A1IZP 64 A1IZP H13 H13 H 0 1 N N N N N N -23.512 12.008 -0.213 -2.790 5.329 3.020 H13 A1IZP 65 A1IZP H14 H14 H 0 1 N N N N N N -22.106 11.622 -2.218 -0.557 5.743 2.077 H14 A1IZP 66 A1IZP H15 H15 H 0 1 N N N N N N -18.262 14.675 -0.644 -0.553 1.521 -0.769 H15 A1IZP 67 A1IZP H16 H16 H 0 1 N N N N N N -17.998 13.706 0.845 -1.918 2.110 -1.748 H16 A1IZP 68 A1IZP H17 H17 H 0 1 N N N N N N -17.740 12.961 -0.769 -0.379 3.003 -1.739 H17 A1IZP 69 A1IZP H18 H18 H 0 1 N N N N N N -18.629 9.263 -8.105 6.755 3.507 -1.910 H18 A1IZP 70 A1IZP H19 H19 H 0 1 N N N N N N -19.206 9.649 -10.664 9.056 1.710 -1.818 H19 A1IZP 71 A1IZP H20 H20 H 0 1 N N N N N N -19.290 14.858 1.756 -3.245 1.305 -0.520 H20 A1IZP 72 A1IZP H21 H21 H 0 1 N N N N N N -22.704 12.841 5.337 -7.217 3.989 1.684 H21 A1IZP 73 A1IZP H22 H22 H 0 1 N N N N N N -21.543 14.182 7.009 -8.750 2.215 1.027 H22 A1IZP 74 A1IZP H24 H24 H 0 1 N N N N N N -14.315 15.975 10.268 -9.035 -7.530 0.099 H24 A1IZP 75 A1IZP H25 H25 H 0 1 N N N N N N -18.608 10.583 -1.260 0.098 6.398 -0.783 H25 A1IZP 76 A1IZP H26 H26 H 0 1 N N N N N N -17.396 9.462 -3.079 2.328 6.815 -1.728 H26 A1IZP 77 A1IZP H27 H27 H 0 1 N N N N N N -17.776 10.165 -5.411 4.111 5.143 -1.476 H27 A1IZP 78 A1IZP H28 H28 H 0 1 N N N N N N -21.702 13.354 -4.280 1.689 2.308 1.905 H28 A1IZP 79 A1IZP H29 H29 H 0 1 N N N N N N -20.614 14.344 -3.249 0.264 2.032 0.874 H29 A1IZP 80 A1IZP H30 H30 H 0 1 N N N N N N -20.295 14.199 -5.011 1.856 1.407 0.379 H30 A1IZP 81 A1IZP H31 H31 H 0 1 N N N N N N -20.080 15.076 -8.860 4.841 -0.831 1.528 H31 A1IZP 82 A1IZP H32 H32 H 0 1 N N N N N N -19.276 15.342 -11.591 8.326 -1.939 1.334 H32 A1IZP 83 A1IZP H33 H33 H 0 1 N N N N N N -20.905 15.479 -10.848 6.758 -2.164 2.144 H33 A1IZP 84 A1IZP H35 H35 H 0 1 N N N N N N -22.422 13.447 -11.611 8.288 -4.652 -0.101 H35 A1IZP 85 A1IZP H36 H36 H 0 1 N N N N N N -22.328 13.095 -13.370 8.120 -4.179 1.611 H36 A1IZP 86 A1IZP H37 H37 H 0 1 N N N N N N -22.818 15.822 -12.039 6.188 -5.466 1.900 H37 A1IZP 87 A1IZP H38 H38 H 0 1 N N N N N N -22.471 16.779 -14.235 5.459 -5.103 -1.061 H38 A1IZP 88 A1IZP H39 H39 H 0 1 N N N N N N -22.390 15.152 -14.991 4.360 -5.200 0.356 H39 A1IZP 89 A1IZP H40 H40 H 0 1 N N N N N N -20.097 15.351 -14.407 4.999 -3.020 1.144 H40 A1IZP 90 A1IZP H41 H41 H 0 1 N N N N N N -20.445 16.474 -13.049 5.026 -2.771 -0.629 H41 A1IZP 91 A1IZP H42 H42 H 0 1 N N N N N N -26.063 15.644 -13.108 6.470 -8.636 0.068 H42 A1IZP 92 A1IZP H43 H43 H 0 1 N N N N N N -19.597 12.040 -11.850 8.595 -0.296 -0.419 H43 A1IZP 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1IZP C38 C39 SING N N 1 A1IZP C38 C37 SING N N 2 A1IZP C39 N7 SING N N 3 A1IZP O4 C40 DOUB N N 4 A1IZP C40 O3 SING N N 5 A1IZP C40 C37 SING N N 6 A1IZP C37 C36 SING N N 7 A1IZP N7 C36 SING N N 8 A1IZP N7 C35 SING N N 9 A1IZP C35 C34 SING N N 10 A1IZP C41 C34 DOUB Y N 11 A1IZP C41 C2 SING Y N 12 A1IZP C34 C33 SING Y N 13 A1IZP C2 C1 SING N N 14 A1IZP C2 C3 DOUB Y N 15 A1IZP C1 N1 DOUB N N 16 A1IZP C33 C4 DOUB Y N 17 A1IZP C3 C4 SING Y N 18 A1IZP C3 O2 SING Y N 19 A1IZP C4 N2 SING Y N 20 A1IZP O2 C5 SING Y N 21 A1IZP N2 C5 DOUB Y N 22 A1IZP C5 C6 SING N N 23 A1IZP C6 C31 DOUB Y N 24 A1IZP C6 C7 SING Y N 25 A1IZP C31 C30 SING Y N 26 A1IZP C32 C7 SING N N 27 A1IZP C7 C8 DOUB Y N 28 A1IZP C30 C29 DOUB Y N 29 A1IZP C8 C29 SING Y N 30 A1IZP C8 C9 SING N N 31 A1IZP C27 C9 DOUB Y N 32 A1IZP C27 C26 SING Y N 33 A1IZP C9 C10 SING Y N 34 A1IZP C26 C25 DOUB Y N 35 A1IZP C10 C28 SING N N 36 A1IZP C10 C11 DOUB Y N 37 A1IZP C11 C25 SING Y N 38 A1IZP C11 N3 SING N N 39 A1IZP N3 C12 SING N N 40 A1IZP C12 N4 DOUB Y N 41 A1IZP C12 C16 SING Y N 42 A1IZP N5 C16 SING Y N 43 A1IZP N5 C17 DOUB Y N 44 A1IZP N4 C13 SING Y N 45 A1IZP C16 C15 DOUB Y N 46 A1IZP C17 C18 SING Y N 47 A1IZP C13 C14 DOUB Y N 48 A1IZP C15 C14 SING Y N 49 A1IZP C15 C24 SING Y N 50 A1IZP C18 C24 DOUB Y N 51 A1IZP C18 C19 SING N N 52 A1IZP C19 N6 SING N N 53 A1IZP C20 N6 SING N N 54 A1IZP C20 C21 SING N N 55 A1IZP N6 C23 SING N N 56 A1IZP C23 C22 SING N N 57 A1IZP C21 C22 SING N N 58 A1IZP C22 O1 SING N N 59 A1IZP C17 H1 SING N N 60 A1IZP C19 H2 SING N N 61 A1IZP C19 H3 SING N N 62 A1IZP C20 H4 SING N N 63 A1IZP C20 H5 SING N N 64 A1IZP C21 H6 SING N N 65 A1IZP C21 H7 SING N N 66 A1IZP C22 H8 SING N N 67 A1IZP C23 H9 SING N N 68 A1IZP C23 H10 SING N N 69 A1IZP C24 H11 SING N N 70 A1IZP C25 H12 SING N N 71 A1IZP C26 H13 SING N N 72 A1IZP C27 H14 SING N N 73 A1IZP C28 H15 SING N N 74 A1IZP C28 H16 SING N N 75 A1IZP C28 H17 SING N N 76 A1IZP N1 H18 SING N N 77 A1IZP C1 H19 SING N N 78 A1IZP N3 H20 SING N N 79 A1IZP C13 H21 SING N N 80 A1IZP C14 H22 SING N N 81 A1IZP O1 H24 SING N N 82 A1IZP C29 H25 SING N N 83 A1IZP C30 H26 SING N N 84 A1IZP C31 H27 SING N N 85 A1IZP C32 H28 SING N N 86 A1IZP C32 H29 SING N N 87 A1IZP C32 H30 SING N N 88 A1IZP C33 H31 SING N N 89 A1IZP C35 H32 SING N N 90 A1IZP C35 H33 SING N N 91 A1IZP C36 H35 SING N N 92 A1IZP C36 H36 SING N N 93 A1IZP C37 H37 SING N N 94 A1IZP C38 H38 SING N N 95 A1IZP C38 H39 SING N N 96 A1IZP C39 H40 SING N N 97 A1IZP C39 H41 SING N N 98 A1IZP O3 H42 SING N N 99 A1IZP C41 H43 SING N N 100 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1IZP InChI InChI 1.06 "InChI=1S/C41H41N7O4/c1-24-32(5-3-7-34(24)40-46-36-17-26(15-30(18-42)38(36)52-40)20-47-13-10-29(22-47)41(50)51)33-6-4-8-35(25(33)2)45-39-37-28(9-12-43-39)16-27(19-44-37)21-48-14-11-31(49)23-48/h3-9,12,15-19,29,31,42,49H,10-11,13-14,20-23H2,1-2H3,(H,43,45)(H,50,51)/b42-18+/t29-,31-/m1/s1" A1IZP InChIKey InChI 1.06 QEBUICJDDPRIEV-KXINHMPDSA-N A1IZP SMILES_CANONICAL CACTVS 3.385 "Cc1c(Nc2nccc3cc(CN4CC[C@@H](O)C4)cnc23)cccc1c5cccc(c5C)c6oc7c(C=N)cc(CN8CC[C@H](C8)C(O)=O)cc7n6" A1IZP SMILES CACTVS 3.385 "Cc1c(Nc2nccc3cc(CN4CC[CH](O)C4)cnc23)cccc1c5cccc(c5C)c6oc7c(C=N)cc(CN8CC[CH](C8)C(O)=O)cc7n6" A1IZP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/c1cc(cc2c1oc(n2)c3cccc(c3C)c4cccc(c4C)Nc5c6c(ccn5)cc(cn6)CN7CC[C@H](C7)O)CN8CC[C@H](C8)C(=O)O" A1IZP SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1c2nc3cc(cc(c3o2)C=N)CN4CCC(C4)C(=O)O)c5cccc(c5C)Nc6c7c(ccn6)cc(cn7)CN8CCC(C8)O" # _pdbx_chem_comp_identifier.comp_id A1IZP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R})-1-[[7-(iminomethyl)-2-[2-methyl-3-[2-methyl-3-[[3-[[(3~{R})-3-oxidanylpyrrolidin-1-yl]methyl]-1,7-naphthyridin-8-yl]amino]phenyl]phenyl]-1,3-benzoxazol-5-yl]methyl]pyrrolidine-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1IZP "Create component" 2025-01-23 PDBE A1IZP "Initial release" 2025-06-18 RCSB #