data_A1J17 # _chem_comp.id A1J17 _chem_comp.name "[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-[4-[[2,4-bis(oxidanyl)phenyl]methyl]piperazin-1-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H25 N7 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-10 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.467 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1J17 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 29GE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J17 C15 C1 C 0 1 Y N N N N N -2.694 17.483 -14.799 6.040 0.082 0.808 C15 A1J17 1 A1J17 C17 C2 C 0 1 Y N N N N N -0.927 17.037 -16.796 6.683 -2.193 1.187 C17 A1J17 2 A1J17 C20 C3 C 0 1 Y N N N N N -2.252 15.031 -15.664 7.580 -0.992 -0.689 C20 A1J17 3 A1J17 C21 C4 C 0 1 Y N N N N N -2.998 16.001 -14.699 6.852 0.127 -0.317 C21 A1J17 4 A1J17 C24 C5 C 0 1 N N N N N N -2.130 21.211 -11.868 1.975 0.292 -0.366 C24 A1J17 5 A1J17 C26 C6 C 0 1 N N S N N N -0.726 23.076 -9.011 -1.072 -0.222 -1.280 C26 A1J17 6 A1J17 C28 C7 C 0 1 N N R N N N 0.423 22.888 -8.004 -2.528 -0.730 -1.182 C28 A1J17 7 A1J17 C02 C8 C 0 1 Y N N N N N 2.206 20.461 -2.964 -7.901 -0.385 0.315 C02 A1J17 8 A1J17 C03 C9 C 0 1 Y N N N N N 1.744 20.651 -4.456 -6.629 0.194 0.169 C03 A1J17 9 A1J17 C04 C10 C 0 1 Y N N N N N 0.878 21.646 -4.788 -5.503 -0.631 0.328 C04 A1J17 10 A1J17 C06 C11 C 0 1 N N R N N N -0.182 22.407 -6.902 -3.007 -0.232 0.200 C06 A1J17 11 A1J17 C08 C12 C 0 1 N N S N N N -1.637 21.784 -8.733 -0.843 0.522 0.054 C08 A1J17 12 A1J17 C09 C13 C 0 1 N N N N N N -0.995 20.641 -9.536 0.009 1.745 -0.168 C09 A1J17 13 A1J17 C11 C14 C 0 1 N N N N N N -0.647 19.368 -11.767 2.204 2.805 -0.439 C11 A1J17 14 A1J17 C12 C15 C 0 1 N N N N N N -1.678 18.465 -12.482 3.356 2.674 0.576 C12 A1J17 15 A1J17 C14 C16 C 0 1 N N N N N N -3.413 18.483 -13.860 5.243 1.296 1.211 C14 A1J17 16 A1J17 C16 C17 C 0 1 Y N N N N N -1.665 18.014 -15.845 5.957 -1.077 1.556 C16 A1J17 17 A1J17 C18 C18 C 0 1 Y N N N N N -1.226 15.553 -16.696 7.495 -2.154 0.063 C18 A1J17 18 A1J17 C23 C19 C 0 1 N N N N N N -3.143 20.310 -12.602 3.128 0.261 0.643 C23 A1J17 19 A1J17 C30 C20 C 0 1 Y N N N N N 1.379 20.552 -6.609 -4.874 1.433 -0.127 C30 A1J17 20 A1J17 C33 C21 C 0 1 Y N N N N N 0.789 22.405 -2.289 -6.891 -2.417 0.736 C33 A1J17 21 A1J17 N01 N1 N 0 1 N N N N N N 3.148 19.385 -2.637 -9.047 0.376 0.164 N01 A1J17 22 A1J17 N05 N2 N 0 1 Y N N N N N 0.659 21.580 -6.142 -4.412 0.178 0.135 N05 A1J17 23 A1J17 N10 N3 N 0 1 N N N N N N -1.253 20.426 -11.029 1.343 1.619 -0.318 N10 A1J17 24 A1J17 N13 N4 N 0 1 N N N N N N -2.540 19.229 -13.285 4.035 1.386 0.380 N13 A1J17 25 A1J17 N31 N5 N 0 1 Y N N N N N 2.059 19.971 -5.570 -6.176 1.440 -0.107 N31 A1J17 26 A1J17 N32 N6 N 0 1 Y N N N N N 0.357 22.580 -3.705 -5.679 -1.918 0.608 N32 A1J17 27 A1J17 N34 N7 N 0 1 Y N N N N N 1.717 21.336 -1.944 -7.978 -1.682 0.595 N34 A1J17 28 A1J17 O07 O1 O 0 1 N N N N N N -1.476 21.516 -7.471 -2.164 0.904 0.495 O07 A1J17 29 A1J17 O19 O2 O 0 1 N N N N N N -0.576 14.633 -17.549 8.208 -3.253 -0.300 O19 A1J17 30 A1J17 O22 O3 O 0 1 N N N N N N -3.911 15.491 -13.770 6.932 1.267 -1.052 O22 A1J17 31 A1J17 O25 O4 O 0 1 N N N N N N -0.239 19.898 -8.956 -0.504 2.843 -0.210 O25 A1J17 32 A1J17 O27 O5 O 0 1 N N N N N N -1.384 24.220 -8.825 -0.166 -1.321 -1.402 O27 A1J17 33 A1J17 O29 O6 O 0 1 N N N N N N 1.079 24.183 -7.762 -2.565 -2.157 -1.240 O29 A1J17 34 A1J17 H171 H1 H 0 0 N N N N N N -0.213 17.406 -17.517 6.617 -3.098 1.773 H171 A1J17 35 A1J17 H201 H2 H 0 0 N N N N N N -2.456 13.972 -15.611 8.212 -0.959 -1.564 H201 A1J17 36 A1J17 H241 H3 H 0 0 N N N N N N -2.677 21.932 -11.242 2.360 0.105 -1.368 H241 A1J17 37 A1J17 H242 H4 H 0 0 N N N N N N -1.527 21.754 -12.611 1.242 -0.472 -0.107 H242 A1J17 38 A1J17 H261 H5 H 0 0 N N N N N N -0.322 22.996 -10.031 -0.961 0.459 -2.124 H261 A1J17 39 A1J17 H281 H6 H 0 0 N N N N N N 1.148 22.172 -8.418 -3.137 -0.300 -1.977 H281 A1J17 40 A1J17 H061 H7 H 0 0 N N N N N N -0.593 23.217 -6.281 -2.871 -1.010 0.951 H061 A1J17 41 A1J17 H081 H8 H 0 0 N N N N N N -2.674 21.967 -9.052 -0.374 -0.139 0.782 H081 A1J17 42 A1J17 H111 H9 H 0 0 N N N N N N 0.021 19.806 -12.524 1.627 3.704 -0.225 H111 A1J17 43 A1J17 H112 H10 H 0 0 N N N N N N -0.059 18.748 -11.074 2.611 2.863 -1.449 H112 A1J17 44 A1J17 H121 H11 H 0 0 N N N N N N -1.145 17.740 -13.114 4.068 3.486 0.425 H121 A1J17 45 A1J17 H122 H12 H 0 0 N N N N N N -2.271 17.927 -11.727 2.956 2.724 1.588 H122 A1J17 46 A1J17 H141 H13 H 0 0 N N N N N N -3.981 17.928 -13.099 4.958 1.212 2.259 H141 A1J17 47 A1J17 H142 H14 H 0 0 N N N N N N -4.101 19.109 -14.447 5.848 2.191 1.069 H142 A1J17 48 A1J17 H161 H15 H 0 0 N N N N N N -1.465 19.073 -15.907 5.325 -1.110 2.431 H161 A1J17 49 A1J17 H231 H16 H 0 0 N N N N N N -3.690 20.923 -13.333 2.729 0.344 1.654 H231 A1J17 50 A1J17 H232 H17 H 0 0 N N N N N N -3.849 19.905 -11.862 3.673 -0.678 0.543 H232 A1J17 51 A1J17 H301 H18 H 0 0 N N N N N N 1.418 20.232 -7.640 -4.253 2.294 -0.323 H301 A1J17 52 A1J17 H331 H19 H 0 0 N N N N N N 0.416 23.068 -1.522 -6.999 -3.467 0.964 H331 A1J17 53 A1J17 H011 H20 H 0 0 N N N N N N 3.346 19.401 -1.657 -8.978 1.321 -0.044 H011 A1J17 54 A1J17 H012 H21 H 0 0 N N N N N N 2.744 18.503 -2.881 -9.920 -0.035 0.267 H012 A1J17 55 A1J17 H191 H23 H 0 0 N N N N N N -0.877 13.753 -17.354 7.738 -3.844 -0.903 H191 A1J17 56 A1J17 H221 H24 H 0 0 N N N N N N -3.964 14.547 -13.862 7.631 1.871 -0.766 H221 A1J17 57 A1J17 H271 H25 H 0 0 N N N N N N -0.804 24.952 -9.001 -0.305 -1.859 -2.194 H271 A1J17 58 A1J17 H291 H26 H 0 0 N N N N N N 1.491 24.484 -8.563 -2.219 -2.527 -2.064 H291 A1J17 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1J17 N01 C02 SING N N 1 A1J17 C02 C03 DOUB Y N 2 A1J17 C02 N34 SING Y N 3 A1J17 C03 C04 SING Y N 4 A1J17 C03 N31 SING Y N 5 A1J17 C04 N05 SING Y N 6 A1J17 C04 N32 DOUB Y N 7 A1J17 N05 C06 SING N N 8 A1J17 N05 C30 SING Y N 9 A1J17 C06 O07 SING N N 10 A1J17 C06 C28 SING N N 11 A1J17 O07 C08 SING N N 12 A1J17 C08 C09 SING N N 13 A1J17 C08 C26 SING N N 14 A1J17 C09 N10 SING N N 15 A1J17 C09 O25 DOUB N N 16 A1J17 N10 C11 SING N N 17 A1J17 N10 C24 SING N N 18 A1J17 C11 C12 SING N N 19 A1J17 C12 N13 SING N N 20 A1J17 N13 C14 SING N N 21 A1J17 N13 C23 SING N N 22 A1J17 C14 C15 SING N N 23 A1J17 C15 C16 DOUB Y N 24 A1J17 C15 C21 SING Y N 25 A1J17 C16 C17 SING Y N 26 A1J17 C17 C18 DOUB Y N 27 A1J17 C18 O19 SING N N 28 A1J17 C18 C20 SING Y N 29 A1J17 C20 C21 DOUB Y N 30 A1J17 C21 O22 SING N N 31 A1J17 C23 C24 SING N N 32 A1J17 C26 O27 SING N N 33 A1J17 C26 C28 SING N N 34 A1J17 C28 O29 SING N N 35 A1J17 C30 N31 DOUB Y N 36 A1J17 N32 C33 SING Y N 37 A1J17 C33 N34 DOUB Y N 38 A1J17 C17 H171 SING N N 39 A1J17 C20 H201 SING N N 40 A1J17 C24 H241 SING N N 41 A1J17 C24 H242 SING N N 42 A1J17 C26 H261 SING N N 43 A1J17 C28 H281 SING N N 44 A1J17 C06 H061 SING N N 45 A1J17 C08 H081 SING N N 46 A1J17 C11 H111 SING N N 47 A1J17 C11 H112 SING N N 48 A1J17 C12 H121 SING N N 49 A1J17 C12 H122 SING N N 50 A1J17 C14 H141 SING N N 51 A1J17 C14 H142 SING N N 52 A1J17 C16 H161 SING N N 53 A1J17 C23 H231 SING N N 54 A1J17 C23 H232 SING N N 55 A1J17 C30 H301 SING N N 56 A1J17 C33 H331 SING N N 57 A1J17 N01 H011 SING N N 58 A1J17 N01 H012 SING N N 59 A1J17 O19 H191 SING N N 60 A1J17 O22 H221 SING N N 61 A1J17 O27 H271 SING N N 62 A1J17 O29 H291 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J17 InChI InChI 1.06 "InChI=1S/C21H25N7O6/c22-18-14-19(24-9-23-18)28(10-25-14)21-16(32)15(31)17(34-21)20(33)27-5-3-26(4-6-27)8-11-1-2-12(29)7-13(11)30/h1-2,7,9-10,15-17,21,29-32H,3-6,8H2,(H2,22,23,24)/t15-,16+,17-,21+/m0/s1" A1J17 InChIKey InChI 1.06 UGVPJJVNJLFZQL-GRXQJBFDSA-N A1J17 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)C(=O)N4CCN(CC4)Cc5ccc(O)cc5O" A1J17 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]([CH](O)[CH]3O)C(=O)N4CCN(CC4)Cc5ccc(O)cc5O" A1J17 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1O)O)CN2CCN(CC2)C(=O)[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" A1J17 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1O)O)CN2CCN(CC2)C(=O)C3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id A1J17 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-[4-[[2,4-bis(oxidanyl)phenyl]methyl]piperazin-1-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J17 "Create component" 2026-03-10 PDBE A1J17 "Initial release" 2026-08-26 RCSB #