data_A1J23 # _chem_comp.id A1J23 _chem_comp.name "N-[4-[8-[1,2-dimethyl-6-(trifluoromethyl)benzimidazol-5-yl]indolizin-3-yl]carbonyl-2,6-bis(fluoranyl)phenyl]-4-[(4-methoxycyclohexyl)amino]butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H36 F5 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-23 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 681.695 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1J23 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 29MA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J23 C1 C1 C 0 1 N N N N N N 4.698 21.931 7.612 15.008 -3.220 1.601 C1 A1J23 1 A1J23 C3 C2 C 0 1 N N N N N N 5.828 19.812 7.536 13.255 -1.665 1.095 C3 A1J23 2 A1J23 C5 C3 C 0 1 N N N N N N 5.566 18.341 7.851 13.157 -0.174 0.768 C5 A1J23 3 A1J23 C6 C4 C 0 1 N N N N N N 6.834 17.511 7.742 11.752 0.330 1.105 C6 A1J23 4 A1J23 C7 C5 C 0 1 N N N N N N 7.473 17.666 6.369 10.721 -0.441 0.278 C7 A1J23 5 A1J23 C10 C6 C 0 1 N N N N N N 6.468 19.967 6.156 12.225 -2.437 0.268 C10 A1J23 6 A1J23 C14 C7 C 0 1 N N N N N N 9.339 16.732 4.965 8.446 -0.198 -0.513 C14 A1J23 7 A1J23 C15 C8 C 0 1 N N N N N N 10.352 15.610 4.917 7.055 0.318 -0.140 C15 A1J23 8 A1J23 C16 C9 C 0 1 N N N N N N 11.426 15.751 5.984 6.090 0.068 -1.300 C16 A1J23 9 A1J23 C21 C10 C 0 1 Y N N N N N 13.958 12.272 4.694 2.357 2.163 -0.744 C21 A1J23 10 A1J23 C23 C11 C 0 1 Y N N N N N 14.867 11.253 4.624 1.121 2.690 -0.434 C23 A1J23 11 A1J23 C24 C12 C 0 1 Y N N N N N 14.906 10.291 5.629 -0.041 2.051 -0.875 C24 A1J23 12 A1J23 C25 C13 C 0 1 Y N N N N N 14.017 10.376 6.692 0.053 0.878 -1.629 C25 A1J23 13 A1J23 C26 C14 C 0 1 Y N N N N N 13.122 11.400 6.736 1.292 0.355 -1.936 C26 A1J23 14 A1J23 C28 C15 C 0 1 N N N N N N 15.880 9.176 5.579 -1.366 2.613 -0.544 C28 A1J23 15 A1J23 C31 C16 C 0 1 Y N N N N N 17.895 10.709 5.233 -2.464 0.370 -0.475 C31 A1J23 16 A1J23 C35 C17 C 0 1 Y N N N N N 20.527 6.998 4.767 -6.530 2.444 0.073 C35 A1J23 17 A1J23 C36 C18 C 0 1 Y N N N N N 19.310 6.383 4.977 -5.688 3.560 0.005 C36 A1J23 18 A1J23 C37 C19 C 0 1 Y N N N N N 18.200 7.138 5.172 -4.354 3.404 -0.153 C37 A1J23 19 A1J23 C39 C20 C 0 1 Y N N N N N 21.959 9.009 4.521 -6.850 -0.024 0.038 C39 A1J23 20 A1J23 C40 C21 C 0 1 Y N N N N N 22.035 9.825 3.377 -7.147 -0.730 -1.122 C40 A1J23 21 A1J23 C43 C22 C 0 1 Y N N N N N 24.856 11.622 2.196 -9.167 -3.636 -1.391 C43 A1J23 22 A1J23 N11 N1 N 0 1 N N N N N N 8.745 16.864 6.328 9.373 0.043 0.601 N11 A1J23 23 A1J23 C9 C23 C 0 1 N N N N N N 7.742 19.136 6.043 10.820 -1.933 0.604 C9 A1J23 24 A1J23 O2 O1 O 0 1 N N N N N N 4.565 20.508 7.567 14.567 -2.136 0.780 O2 A1J23 25 A1J23 C17 C24 C 0 1 N N N N N N 12.522 14.721 5.870 4.720 0.577 -0.933 C17 A1J23 26 A1J23 O18 O2 O 0 1 N N N N N N 13.701 15.065 5.844 4.533 1.089 0.150 O18 A1J23 27 A1J23 N19 N2 N 0 1 N N N N N N 12.136 13.430 5.801 3.701 0.462 -1.808 N19 A1J23 28 A1J23 C20 C25 C 0 1 Y N N N N N 13.070 12.365 5.747 2.448 0.994 -1.495 C20 A1J23 29 A1J23 F27 F1 F 0 1 N N N N N N 12.261 11.477 7.774 1.384 -0.778 -2.665 F27 A1J23 30 A1J23 F22 F2 F 0 1 N N N N N N 13.920 13.213 3.711 3.480 2.783 -0.322 F22 A1J23 31 A1J23 O29 O3 O 0 1 N N N N N N 15.487 8.029 5.740 -1.493 3.813 -0.368 O29 A1J23 32 A1J23 C30 C26 C 0 1 Y N N N N N 17.281 9.478 5.338 -2.488 1.761 -0.431 C30 A1J23 33 A1J23 C32 C27 C 0 1 Y N N N N N 19.237 10.518 5.000 -3.763 -0.076 -0.333 C32 A1J23 34 A1J23 C33 C28 C 0 1 Y N N N N N 19.493 9.168 4.952 -4.584 1.043 -0.201 C33 A1J23 35 A1J23 C34 C29 C 0 1 Y N N N N N 20.631 8.384 4.753 -5.984 1.176 -0.030 C34 A1J23 36 A1J23 N38 N3 N 0 1 Y N N N N N 18.273 8.510 5.163 -3.797 2.162 -0.257 N38 A1J23 37 A1J23 C41 C30 C 0 1 Y N N N N N 23.247 10.469 3.054 -7.963 -1.859 -1.049 C41 A1J23 38 A1J23 N42 N4 N 0 1 Y N N N N N 23.586 11.310 2.009 -8.426 -2.740 -1.974 N42 A1J23 39 A1J23 C44 C31 C 0 1 N N N N N N 25.647 12.509 1.310 -9.855 -4.778 -2.094 C44 A1J23 40 A1J23 N45 N5 N 0 1 Y N N N N N 25.360 11.017 3.327 -9.232 -3.393 -0.054 N45 A1J23 41 A1J23 C46 C32 C 0 1 N N N N N N 26.715 11.117 3.865 -9.968 -4.181 0.937 C46 A1J23 42 A1J23 C47 C33 C 0 1 Y N N N N N 24.348 10.289 3.871 -8.474 -2.266 0.196 C47 A1J23 43 A1J23 C48 C34 C 0 1 Y N N N N N 24.292 9.480 5.014 -8.166 -1.547 1.345 C48 A1J23 44 A1J23 C49 C35 C 0 1 Y N N N N N 23.089 8.832 5.347 -7.371 -0.440 1.268 C49 A1J23 45 A1J23 C50 C36 C 0 1 N N N N N N 23.066 7.954 6.606 -7.047 0.337 2.518 C50 A1J23 46 A1J23 F51 F3 F 0 1 N N N N N N 21.972 8.150 7.350 -7.674 -0.263 3.615 F51 A1J23 47 A1J23 F52 F4 F 0 1 N N N N N N 23.109 6.644 6.320 -5.662 0.342 2.718 F52 A1J23 48 A1J23 F53 F5 F 0 1 N N N N N N 24.103 8.189 7.400 -7.503 1.652 2.381 F53 A1J23 49 A1J23 H55 H1 H 0 1 N N N N N N 3.700 22.393 7.634 15.021 -2.904 2.644 H55 A1J23 50 A1J23 H56 H2 H 0 1 N N N N N N 5.255 22.219 8.516 14.327 -4.063 1.485 H56 A1J23 51 A1J23 H54 H3 H 0 1 N N N N N N 5.242 22.277 6.721 16.012 -3.519 1.299 H54 A1J23 52 A1J23 H4 H4 H 0 1 N N N N N N 6.508 20.226 8.295 13.058 -1.819 2.156 H4 A1J23 53 A1J23 H57 H5 H 0 1 N N N N N N 5.173 18.260 8.875 13.891 0.376 1.357 H57 A1J23 54 A1J23 H58 H6 H 0 1 N N N N N N 4.822 17.951 7.141 13.353 -0.020 -0.292 H58 A1J23 55 A1J23 H59 H7 H 0 1 N N N N N N 6.586 16.452 7.905 11.555 0.177 2.166 H59 A1J23 56 A1J23 H60 H8 H 0 1 N N N N N N 7.548 17.843 8.510 11.682 1.393 0.873 H60 A1J23 57 A1J23 H8 H9 H 0 1 N N N N N N 6.779 17.265 5.615 10.918 -0.288 -0.783 H8 A1J23 58 A1J23 H63 H10 H 0 1 N N N N N N 6.715 21.026 5.992 12.421 -2.283 -0.793 H63 A1J23 59 A1J23 H64 H11 H 0 1 N N N N N N 5.753 19.634 5.389 12.295 -3.500 0.500 H64 A1J23 60 A1J23 H65 H12 H 0 1 N N N N N N 9.836 17.676 4.697 8.394 -1.267 -0.718 H65 A1J23 61 A1J23 H66 H13 H 0 1 N N N N N N 8.537 16.522 4.243 8.802 0.326 -1.400 H66 A1J23 62 A1J23 H1 H14 H 0 1 N N N N N N 9.828 14.655 5.068 6.699 -0.205 0.748 H1 A1J23 63 A1J23 H67 H15 H 0 1 N N N N N N 10.834 15.612 3.928 7.107 1.388 0.065 H67 A1J23 64 A1J23 H68 H16 H 0 1 N N N N N N 11.876 16.751 5.896 6.446 0.591 -2.188 H68 A1J23 65 A1J23 H85 H17 H 0 1 N N N N N N 10.952 15.648 6.971 6.038 -1.001 -1.505 H85 A1J23 66 A1J23 H70 H18 H 0 1 N N N N N N 15.553 11.195 3.791 1.051 3.596 0.150 H70 A1J23 67 A1J23 H71 H19 H 0 1 N N N N N N 14.036 9.635 7.478 -0.843 0.382 -1.970 H71 A1J23 68 A1J23 H72 H20 H 0 1 N N N N N N 17.402 11.666 5.320 -1.588 -0.249 -0.602 H72 A1J23 69 A1J23 H74 H21 H 0 1 N N N N N N 21.410 6.395 4.612 -7.595 2.571 0.199 H74 A1J23 70 A1J23 H75 H22 H 0 1 N N N N N N 19.241 5.305 4.986 -6.106 4.553 0.079 H75 A1J23 71 A1J23 H76 H23 H 0 1 N N N N N N 17.248 6.655 5.336 -3.720 4.276 -0.203 H76 A1J23 72 A1J23 H77 H24 H 0 1 N N N N N N 21.167 9.958 2.748 -6.748 -0.407 -2.072 H77 A1J23 73 A1J23 H12 H25 H 0 1 N N N N N N 8.549 15.947 6.675 9.390 1.020 0.853 H12 A1J23 74 A1J23 H61 H27 H 0 1 N N N N N N 8.130 19.211 5.016 10.623 -2.087 1.666 H61 A1J23 75 A1J23 H62 H28 H 0 1 N N N N N N 8.490 19.529 6.747 10.086 -2.483 0.015 H62 A1J23 76 A1J23 H69 H29 H 0 1 N N N N N N 11.159 13.217 5.788 3.839 0.011 -2.656 H69 A1J23 77 A1J23 H73 H30 H 0 1 N N N N N N 19.970 11.301 4.875 -4.086 -1.107 -0.325 H73 A1J23 78 A1J23 H80 H31 H 0 1 N N N N N N 25.014 12.861 0.482 -10.849 -4.464 -2.411 H80 A1J23 79 A1J23 H78 H32 H 0 1 N N N N N N 26.011 13.373 1.886 -9.271 -5.071 -2.967 H78 A1J23 80 A1J23 H79 H33 H 0 1 N N N N N N 26.504 11.952 0.904 -9.941 -5.625 -1.414 H79 A1J23 81 A1J23 H82 H34 H 0 1 N N N N N N 26.792 10.512 4.781 -9.322 -4.967 1.329 H82 A1J23 82 A1J23 H83 H35 H 0 1 N N N N N N 27.434 10.746 3.119 -10.288 -3.533 1.753 H83 A1J23 83 A1J23 H81 H36 H 0 1 N N N N N N 26.939 12.168 4.100 -10.842 -4.631 0.467 H81 A1J23 84 A1J23 H84 H37 H 0 1 N N N N N N 25.167 9.355 5.635 -8.560 -1.863 2.299 H84 A1J23 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1J23 C44 C43 SING N N 1 A1J23 N42 C43 DOUB Y N 2 A1J23 N42 C41 SING Y N 3 A1J23 C43 N45 SING Y N 4 A1J23 C41 C40 DOUB Y N 5 A1J23 C41 C47 SING Y N 6 A1J23 N45 C46 SING N N 7 A1J23 N45 C47 SING Y N 8 A1J23 C40 C39 SING Y N 9 A1J23 F22 C21 SING N N 10 A1J23 C47 C48 DOUB Y N 11 A1J23 C39 C34 SING N N 12 A1J23 C39 C49 DOUB Y N 13 A1J23 C23 C21 DOUB Y N 14 A1J23 C23 C24 SING Y N 15 A1J23 C21 C20 SING Y N 16 A1J23 C34 C35 DOUB Y N 17 A1J23 C34 C33 SING Y N 18 A1J23 C35 C36 SING Y N 19 A1J23 C15 C14 SING N N 20 A1J23 C15 C16 SING N N 21 A1J23 C33 C32 DOUB Y N 22 A1J23 C33 N38 SING Y N 23 A1J23 C14 N11 SING N N 24 A1J23 C36 C37 DOUB Y N 25 A1J23 C32 C31 SING Y N 26 A1J23 C48 C49 SING Y N 27 A1J23 N38 C37 SING Y N 28 A1J23 N38 C30 SING Y N 29 A1J23 C31 C30 DOUB Y N 30 A1J23 C30 C28 SING N N 31 A1J23 C49 C50 SING N N 32 A1J23 C28 C24 SING N N 33 A1J23 C28 O29 DOUB N N 34 A1J23 C24 C25 DOUB Y N 35 A1J23 C20 N19 SING N N 36 A1J23 C20 C26 DOUB Y N 37 A1J23 N19 C17 SING N N 38 A1J23 O18 C17 DOUB N N 39 A1J23 C17 C16 SING N N 40 A1J23 C9 C10 SING N N 41 A1J23 C9 C7 SING N N 42 A1J23 C10 C3 SING N N 43 A1J23 F52 C50 SING N N 44 A1J23 N11 C7 SING N N 45 A1J23 C7 C6 SING N N 46 A1J23 C50 F51 SING N N 47 A1J23 C50 F53 SING N N 48 A1J23 C25 C26 SING Y N 49 A1J23 C26 F27 SING N N 50 A1J23 C3 O2 SING N N 51 A1J23 C3 C5 SING N N 52 A1J23 O2 C1 SING N N 53 A1J23 C6 C5 SING N N 54 A1J23 C1 H55 SING N N 55 A1J23 C1 H56 SING N N 56 A1J23 C1 H54 SING N N 57 A1J23 C3 H4 SING N N 58 A1J23 C5 H57 SING N N 59 A1J23 C5 H58 SING N N 60 A1J23 C6 H59 SING N N 61 A1J23 C6 H60 SING N N 62 A1J23 C7 H8 SING N N 63 A1J23 C10 H63 SING N N 64 A1J23 C10 H64 SING N N 65 A1J23 C14 H65 SING N N 66 A1J23 C14 H66 SING N N 67 A1J23 C15 H1 SING N N 68 A1J23 C15 H67 SING N N 69 A1J23 C16 H68 SING N N 70 A1J23 C16 H85 SING N N 71 A1J23 C23 H70 SING N N 72 A1J23 C25 H71 SING N N 73 A1J23 C31 H72 SING N N 74 A1J23 C35 H74 SING N N 75 A1J23 C36 H75 SING N N 76 A1J23 C37 H76 SING N N 77 A1J23 C40 H77 SING N N 78 A1J23 N11 H12 SING N N 79 A1J23 C9 H61 SING N N 80 A1J23 C9 H62 SING N N 81 A1J23 N19 H69 SING N N 82 A1J23 C32 H73 SING N N 83 A1J23 C44 H80 SING N N 84 A1J23 C44 H78 SING N N 85 A1J23 C44 H79 SING N N 86 A1J23 C46 H82 SING N N 87 A1J23 C46 H83 SING N N 88 A1J23 C46 H81 SING N N 89 A1J23 C48 H84 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J23 InChI InChI 1.06 "InChI=1S/C36H36F5N5O3/c1-20-43-29-18-25(26(36(39,40)41)19-32(29)45(20)2)24-6-5-15-46-30(24)12-13-31(46)35(48)21-16-27(37)34(28(38)17-21)44-33(47)7-4-14-42-22-8-10-23(49-3)11-9-22/h5-6,12-13,15-19,22-23,42H,4,7-11,14H2,1-3H3,(H,44,47)/t22-,23-" A1J23 InChIKey InChI 1.06 MEHXOCAOHCFMPM-YHBQERECSA-N A1J23 SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1CC[C@@H](CC1)NCCCC(=O)Nc2c(F)cc(cc2F)C(=O)c3ccc4n3cccc4c5cc6nc(C)n(C)c6cc5C(F)(F)F" A1J23 SMILES CACTVS 3.385 "CO[CH]1CC[CH](CC1)NCCCC(=O)Nc2c(F)cc(cc2F)C(=O)c3ccc4n3cccc4c5cc6nc(C)n(C)c6cc5C(F)(F)F" A1J23 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc2cc(c(cc2n1C)C(F)(F)F)c3cccn4c3ccc4C(=O)c5cc(c(c(c5)F)NC(=O)CCCNC6CCC(CC6)OC)F" A1J23 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc2cc(c(cc2n1C)C(F)(F)F)c3cccn4c3ccc4C(=O)c5cc(c(c(c5)F)NC(=O)CCCNC6CCC(CC6)OC)F" # _pdbx_chem_comp_identifier.comp_id A1J23 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[4-[8-[1,2-dimethyl-6-(trifluoromethyl)benzimidazol-5-yl]indolizin-3-yl]carbonyl-2,6-bis(fluoranyl)phenyl]-4-[(4-methoxycyclohexyl)amino]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J23 "Create component" 2026-03-23 PDBE A1J23 "Modify PCM" 2026-03-23 PDBE A1J23 "Initial release" 2026-11-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1J23 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #