data_A1J24 # _chem_comp.id A1J24 _chem_comp.name "(E)-N-(4-(9,10-dimethyl-7-(trifluoromethyl)-13,14-dihydro-9H-imidazo[4'',5'':5',6']benzo[1',2':2,3]oxocino[4,5,6-hi]indolizine-2-carbonyl)-2,6-difluorophenyl)-4-(((1r,4r)-4-methoxycyclohexyl)amino)but-2-enamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H38 F5 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-24 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 723.731 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1J24 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 29MF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J24 C1 C1 C 0 1 N N N N N N 5.562 19.281 11.838 15.292 2.464 -1.017 C1 A1J24 1 A1J24 C3 C2 C 0 1 N N N N N N 7.256 18.607 10.258 12.993 2.372 -0.345 C3 A1J24 2 A1J24 C5 C3 C 0 1 N N N N N N 6.867 17.182 9.867 12.064 3.203 0.543 C5 A1J24 3 A1J24 C6 C4 C 0 1 N N N N N N 7.315 16.853 8.451 10.612 2.969 0.121 C6 A1J24 4 A1J24 C7 C5 C 0 1 N N N N N N 8.815 17.083 8.264 10.269 1.486 0.271 C7 A1J24 5 A1J24 C10 C6 C 0 1 N N N N N N 8.763 18.817 10.092 12.650 0.889 -0.195 C10 A1J24 6 A1J24 C14 C7 C 0 1 N N N N N N 10.071 15.645 6.584 8.324 0.065 0.516 C14 A1J24 7 A1J24 C15 C8 C 0 1 N N N N N N 11.457 16.066 6.099 6.874 -0.134 0.070 C15 A1J24 8 A1J24 C16 C9 C 0 1 N N N N N N 12.554 15.768 7.118 6.299 -1.380 0.747 C16 A1J24 9 A1J24 C21 C10 C 0 1 Y N N N N N 13.595 11.401 7.859 2.020 -1.635 0.244 C21 A1J24 10 A1J24 C23 C11 C 0 1 Y N N N N N 14.403 10.295 7.936 0.692 -1.775 -0.104 C23 A1J24 11 A1J24 C24 C12 C 0 1 Y N N N N N 15.258 9.995 6.879 0.144 -3.049 -0.265 C24 A1J24 12 A1J24 C25 C13 C 0 1 Y N N N N N 15.275 10.825 5.765 0.942 -4.180 -0.074 C25 A1J24 13 A1J24 C26 C14 C 0 1 Y N N N N N 14.459 11.918 5.717 2.269 -4.035 0.273 C26 A1J24 14 A1J24 C28 C15 C 0 1 N N N N N N 16.166 8.818 6.886 -1.278 -3.201 -0.637 C28 A1J24 15 A1J24 C31 C16 C 0 1 Y N N N N N 18.190 10.339 6.717 -2.005 -1.238 0.725 C31 A1J24 16 A1J24 C36 C17 C 0 1 Y N N N N N 22.508 9.808 5.159 -5.363 1.751 -0.227 C36 A1J24 17 A1J24 C37 C18 C 0 1 Y N N N N N 22.379 8.646 6.053 -6.091 0.565 -0.127 C37 A1J24 18 A1J24 C38 C19 C 0 1 Y N N N N N 23.468 8.174 6.725 -7.440 0.549 0.219 C38 A1J24 19 A1J24 C39 C20 C 0 1 Y N N N N N 24.747 8.823 6.548 -8.172 1.712 0.276 C39 A1J24 20 A1J24 C40 C21 C 0 1 Y N N N N N 24.856 9.873 5.736 -7.516 2.896 -0.054 C40 A1J24 21 A1J24 C42 C22 C 0 1 N N N N N N 27.290 10.519 5.871 -9.316 4.668 0.058 C42 A1J24 22 A1J24 C43 C23 C 0 1 Y N N N N N 25.448 11.595 4.516 -6.868 4.951 -0.502 C43 A1J24 23 A1J24 N11 N1 N 0 1 N N N N N N 9.190 16.827 6.828 8.875 1.262 -0.134 N11 A1J24 24 A1J24 C9 C24 C 0 1 N N N N N N 9.215 18.501 8.674 11.198 0.655 -0.617 C9 A1J24 25 A1J24 O2 O1 O 0 1 N N N N N N 6.904 18.823 11.635 14.349 2.590 0.049 O2 A1J24 26 A1J24 C17 C25 C 0 1 N N N N N N 12.602 14.332 7.591 4.871 -1.577 0.308 C17 A1J24 27 A1J24 O18 O2 O 0 1 N N N N N N 12.484 14.065 8.783 4.363 -0.798 -0.470 O18 A1J24 28 A1J24 N19 N2 N 0 1 N N N N N N 12.779 13.390 6.638 4.159 -2.620 0.780 N19 A1J24 29 A1J24 C20 C26 C 0 1 Y N N N N N 13.604 12.232 6.753 2.814 -2.764 0.428 C20 A1J24 30 A1J24 F27 F1 F 0 1 N N N N N N 14.481 12.720 4.630 3.041 -5.128 0.458 F27 A1J24 31 A1J24 F22 F2 F 0 1 N N N N N N 12.764 11.690 8.887 2.551 -0.403 0.400 F22 A1J24 32 A1J24 O29 O3 O 0 1 N N N N N N 15.747 7.674 7.027 -1.629 -4.138 -1.334 O29 A1J24 33 A1J24 C30 C27 C 0 1 Y N N N N N 17.604 9.097 6.714 -2.231 -2.261 -0.184 C30 A1J24 34 A1J24 C32 C28 C 0 1 Y N N N N N 19.558 10.148 6.524 -3.191 -0.539 0.863 C32 A1J24 35 A1J24 C33 C29 C 0 1 N N N N N N 20.489 11.316 6.474 -3.369 0.531 1.933 C33 A1J24 36 A1J24 C34 C30 C 0 1 N N N N N N 21.030 11.586 5.065 -3.823 1.849 1.327 C34 A1J24 37 A1J24 O35 O4 O 0 1 N N N N N N 21.478 10.370 4.433 -4.023 1.834 -0.084 O35 A1J24 38 A1J24 N41 N3 N 0 1 Y N N N N N 25.915 10.658 5.392 -7.948 4.189 -0.159 N41 A1J24 39 A1J24 C44 C31 C 0 1 N N N N N N 26.287 12.647 3.898 -6.901 6.440 -0.735 C44 A1J24 40 A1J24 N45 N4 N 0 1 Y N N N N N 24.164 11.435 4.299 -5.804 4.202 -0.600 N45 A1J24 41 A1J24 C46 C32 C 0 1 Y N N N N N 23.761 10.385 5.033 -6.126 2.926 -0.336 C46 A1J24 42 A1J24 C47 C33 C 0 1 N N N N N N 23.497 6.984 7.687 -8.108 -0.764 0.535 C47 A1J24 43 A1J24 F48 F3 F 0 1 N N N N N N 22.372 6.870 8.383 -8.493 -1.390 -0.655 F48 A1J24 44 A1J24 F49 F4 F 0 1 N N N N N N 23.688 5.825 7.063 -7.214 -1.587 1.227 F49 A1J24 45 A1J24 F50 F5 F 0 1 N N N N N N 24.468 7.093 8.587 -9.238 -0.533 1.328 F50 A1J24 46 A1J24 C51 C34 C 0 1 Y N N N N N 21.007 8.013 6.194 -5.399 -0.688 -0.544 C51 A1J24 47 A1J24 C52 C35 C 0 1 Y N N N N N 20.889 6.663 6.122 -6.033 -1.525 -1.446 C52 A1J24 48 A1J24 C53 C36 C 0 1 Y N N N N N 19.626 6.028 6.248 -5.435 -2.719 -1.857 C53 A1J24 49 A1J24 C54 C37 C 0 1 Y N N N N N 18.520 6.773 6.443 -4.201 -3.052 -1.400 C54 A1J24 50 A1J24 N55 N5 N 0 1 Y N N N N N 18.599 8.153 6.521 -3.545 -2.194 -0.565 N55 A1J24 51 A1J24 C56 C38 C 0 1 Y N N N N N 19.826 8.815 6.402 -4.132 -1.051 -0.015 C56 A1J24 52 A1J24 H58 H1 H 0 1 N N N N N N 5.380 19.419 12.914 15.236 1.459 -1.435 H58 A1J24 53 A1J24 H59 H2 H 0 1 N N N N N N 5.419 20.239 11.316 15.061 3.194 -1.793 H59 A1J24 54 A1J24 H57 H3 H 0 1 N N N N N N 4.857 18.537 11.439 16.297 2.644 -0.636 H57 A1J24 55 A1J24 H4 H4 H 0 1 N N N N N N 6.721 19.317 9.610 12.864 2.671 -1.385 H4 A1J24 56 A1J24 H61 H5 H 0 1 N N N N N N 5.774 17.080 9.929 12.192 2.904 1.584 H61 A1J24 57 A1J24 H60 H6 H 0 1 N N N N N N 7.342 16.477 10.565 12.308 4.260 0.436 H60 A1J24 58 A1J24 H62 H7 H 0 1 N N N N N N 6.766 17.494 7.745 9.950 3.561 0.754 H62 A1J24 59 A1J24 H63 H8 H 0 1 N N N N N N 7.087 15.797 8.241 10.483 3.269 -0.919 H63 A1J24 60 A1J24 H8 H9 H 0 1 N N N N N N 9.358 16.371 8.903 10.398 1.187 1.311 H8 A1J24 61 A1J24 H66 H10 H 0 1 N N N N N N 9.296 18.157 10.793 13.312 0.297 -0.827 H66 A1J24 62 A1J24 H67 H11 H 0 1 N N N N N N 9.005 19.866 10.320 12.779 0.590 0.845 H67 A1J24 63 A1J24 H68 H12 H 0 1 N N N N N N 9.605 15.004 5.821 8.357 0.192 1.598 H68 A1J24 64 A1J24 H69 H13 H 0 1 N N N N N N 10.178 15.080 7.522 8.914 -0.806 0.234 H69 A1J24 65 A1J24 H70 H14 H 0 1 N N N N N N 11.684 15.524 5.169 6.283 0.737 0.352 H70 A1J24 66 A1J24 H1 H15 H 0 1 N N N N N N 11.446 17.148 5.900 6.840 -0.261 -1.012 H1 A1J24 67 A1J24 H71 H16 H 0 1 N N N N N N 13.524 16.010 6.659 6.890 -2.252 0.465 H71 A1J24 68 A1J24 H90 H17 H 0 1 N N N N N N 12.392 16.413 7.995 6.333 -1.254 1.829 H90 A1J24 69 A1J24 H73 H18 H 0 1 N N N N N N 14.376 9.662 8.810 0.077 -0.899 -0.250 H73 A1J24 70 A1J24 H74 H19 H 0 1 N N N N N N 15.933 10.605 4.938 0.520 -5.166 -0.198 H74 A1J24 71 A1J24 H75 H20 H 0 1 N N N N N N 17.686 11.286 6.845 -1.077 -1.030 1.235 H75 A1J24 72 A1J24 H80 H21 H 0 1 N N N N N N 25.615 8.456 7.075 -9.212 1.707 0.566 H80 A1J24 73 A1J24 H81 H22 H 0 1 N N N N N N 27.352 9.670 6.568 -9.865 4.637 -0.882 H81 A1J24 74 A1J24 H82 H23 H 0 1 N N N N N N 27.960 10.341 5.017 -9.812 4.031 0.790 H82 A1J24 75 A1J24 H83 H24 H 0 1 N N N N N N 27.593 11.441 6.389 -9.287 5.693 0.428 H83 A1J24 76 A1J24 H12 H25 H 0 1 N N N N N N 9.664 17.638 6.486 8.797 1.197 -1.138 H12 A1J24 77 A1J24 H65 H27 H 0 1 N N N N N N 10.310 18.594 8.618 10.954 -0.401 -0.510 H65 A1J24 78 A1J24 H64 H28 H 0 1 N N N N N N 8.750 19.218 7.982 11.070 0.955 -1.657 H64 A1J24 79 A1J24 H72 H29 H 0 1 N N N N N N 12.288 13.516 5.776 4.580 -3.270 1.364 H72 A1J24 80 A1J24 H76 H30 H 0 1 N N N N N N 21.338 11.117 7.144 -4.115 0.194 2.654 H76 A1J24 81 A1J24 H77 H31 H 0 1 N N N N N N 19.950 12.210 6.821 -2.420 0.683 2.447 H77 A1J24 82 A1J24 H79 H32 H 0 1 N N N N N N 21.876 12.286 5.134 -4.760 2.141 1.802 H79 A1J24 83 A1J24 H78 H33 H 0 1 N N N N N N 20.232 12.034 4.455 -3.074 2.608 1.556 H78 A1J24 84 A1J24 H84 H34 H 0 1 N N N N N N 25.668 13.268 3.234 -6.705 6.959 0.204 H84 A1J24 85 A1J24 H85 H35 H 0 1 N N N N N N 26.724 13.277 4.686 -6.138 6.710 -1.465 H85 A1J24 86 A1J24 H86 H36 H 0 1 N N N N N N 27.093 12.178 3.315 -7.882 6.727 -1.111 H86 A1J24 87 A1J24 H87 H37 H 0 1 N N N N N N 21.772 6.061 5.966 -7.002 -1.252 -1.836 H87 A1J24 88 A1J24 H88 H38 H 0 1 N N N N N N 19.552 4.952 6.188 -5.956 -3.378 -2.535 H88 A1J24 89 A1J24 H89 H39 H 0 1 N N N N N N 17.560 6.287 6.540 -3.742 -3.983 -1.698 H89 A1J24 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1J24 C44 C43 SING N N 1 A1J24 N45 C43 DOUB Y N 2 A1J24 N45 C46 SING Y N 3 A1J24 O35 C34 SING N N 4 A1J24 O35 C36 SING N N 5 A1J24 C43 N41 SING Y N 6 A1J24 F27 C26 SING N N 7 A1J24 C46 C36 DOUB Y N 8 A1J24 C46 C40 SING Y N 9 A1J24 C34 C33 SING N N 10 A1J24 C36 C37 SING Y N 11 A1J24 N41 C40 SING Y N 12 A1J24 N41 C42 SING N N 13 A1J24 C26 C25 DOUB Y N 14 A1J24 C26 C20 SING Y N 15 A1J24 C40 C39 DOUB Y N 16 A1J24 C25 C24 SING Y N 17 A1J24 C37 C51 SING N N 18 A1J24 C37 C38 DOUB Y N 19 A1J24 C15 C14 SING N N 20 A1J24 C15 C16 SING N N 21 A1J24 C52 C51 DOUB Y N 22 A1J24 C52 C53 SING Y N 23 A1J24 C51 C56 SING Y N 24 A1J24 C53 C54 DOUB Y N 25 A1J24 C56 N55 SING Y N 26 A1J24 C56 C32 DOUB Y N 27 A1J24 C54 N55 SING Y N 28 A1J24 C33 C32 SING N N 29 A1J24 N55 C30 SING Y N 30 A1J24 C32 C31 SING Y N 31 A1J24 C39 C38 SING Y N 32 A1J24 C14 N11 SING N N 33 A1J24 N19 C20 SING N N 34 A1J24 N19 C17 SING N N 35 A1J24 C30 C31 DOUB Y N 36 A1J24 C30 C28 SING N N 37 A1J24 C38 C47 SING N N 38 A1J24 C20 C21 DOUB Y N 39 A1J24 N11 C7 SING N N 40 A1J24 C24 C28 SING N N 41 A1J24 C24 C23 DOUB Y N 42 A1J24 C28 O29 DOUB N N 43 A1J24 F49 C47 SING N N 44 A1J24 C16 C17 SING N N 45 A1J24 C17 O18 DOUB N N 46 A1J24 C47 F48 SING N N 47 A1J24 C47 F50 SING N N 48 A1J24 C21 C23 SING Y N 49 A1J24 C21 F22 SING N N 50 A1J24 C7 C6 SING N N 51 A1J24 C7 C9 SING N N 52 A1J24 C6 C5 SING N N 53 A1J24 C9 C10 SING N N 54 A1J24 C5 C3 SING N N 55 A1J24 C10 C3 SING N N 56 A1J24 C3 O2 SING N N 57 A1J24 O2 C1 SING N N 58 A1J24 C1 H58 SING N N 59 A1J24 C1 H59 SING N N 60 A1J24 C1 H57 SING N N 61 A1J24 C3 H4 SING N N 62 A1J24 C5 H61 SING N N 63 A1J24 C5 H60 SING N N 64 A1J24 C6 H62 SING N N 65 A1J24 C6 H63 SING N N 66 A1J24 C7 H8 SING N N 67 A1J24 C10 H66 SING N N 68 A1J24 C10 H67 SING N N 69 A1J24 C14 H68 SING N N 70 A1J24 C14 H69 SING N N 71 A1J24 C15 H70 SING N N 72 A1J24 C15 H1 SING N N 73 A1J24 C16 H71 SING N N 74 A1J24 C16 H90 SING N N 75 A1J24 C23 H73 SING N N 76 A1J24 C25 H74 SING N N 77 A1J24 C31 H75 SING N N 78 A1J24 C39 H80 SING N N 79 A1J24 C42 H81 SING N N 80 A1J24 C42 H82 SING N N 81 A1J24 C42 H83 SING N N 82 A1J24 N11 H12 SING N N 83 A1J24 C9 H65 SING N N 84 A1J24 C9 H64 SING N N 85 A1J24 N19 H72 SING N N 86 A1J24 C33 H76 SING N N 87 A1J24 C33 H77 SING N N 88 A1J24 C34 H79 SING N N 89 A1J24 C34 H78 SING N N 90 A1J24 C44 H84 SING N N 91 A1J24 C44 H85 SING N N 92 A1J24 C44 H86 SING N N 93 A1J24 C52 H87 SING N N 94 A1J24 C53 H88 SING N N 95 A1J24 C54 H89 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J24 InChI InChI 1.06 "InChI=1S/C38H38F5N5O4/c1-20-45-34-29(47(20)2)19-26(38(41,42)43)32-25-6-5-14-48-30(18-21(35(25)48)12-15-52-37(32)34)36(50)22-16-27(39)33(28(40)17-22)46-31(49)7-4-13-44-23-8-10-24(51-3)11-9-23/h5-6,14,16-19,23-24,44H,4,7-13,15H2,1-3H3,(H,46,49)/t23-,24-" A1J24 InChIKey InChI 1.06 XCYJZALAALHMDH-RQNOJGIXSA-N A1J24 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1CC[C@H](CC1)NCCCC(=O)Nc2c(F)cc(cc2F)C(=O)c3cc4CCOc5c6nc(C)n(C)c6cc(c5c7cccn3c47)C(F)(F)F" A1J24 SMILES CACTVS 3.385 "CO[CH]1CC[CH](CC1)NCCCC(=O)Nc2c(F)cc(cc2F)C(=O)c3cc4CCOc5c6nc(C)n(C)c6cc(c5c7cccn3c47)C(F)(F)F" A1J24 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc2c(n1C)cc(c-3c2OCCc4cc(n5c4c3ccc5)C(=O)c6cc(c(c(c6)F)NC(=O)CCCNC7CCC(CC7)OC)F)C(F)(F)F" A1J24 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc2c(n1C)cc(c-3c2OCCc4cc(n5c4c3ccc5)C(=O)c6cc(c(c(c6)F)NC(=O)CCCNC7CCC(CC7)OC)F)C(F)(F)F" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J24 "Create component" 2026-03-24 PDBE A1J24 "Modify PCM" 2026-03-24 PDBE A1J24 "Initial release" 2026-11-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1J24 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #