data_A1J25 # _chem_comp.id A1J25 _chem_comp.name "N-[4-[8-[4-chloranyl-1,2-dimethyl-6-(trifluoromethyl)benzimidazol-5-yl]indolizin-3-yl]carbonyl-2,6-bis(fluoranyl)phenyl]-4-[(4-methoxycyclohexyl)amino]butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H35 Cl F5 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-03-23 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 716.140 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1J25 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 29MH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J25 C1 C1 C 0 1 N N N N N N -11.566 11.851 -22.228 -14.121 3.584 1.890 C1 A1J25 1 A1J25 C3 C2 C 0 1 N N N N N N -9.438 11.275 -21.241 -13.640 1.876 0.278 C3 A1J25 2 A1J25 C5 C3 C 0 1 N N N N N N -8.613 12.509 -20.883 -13.542 0.349 0.277 C5 A1J25 3 A1J25 C6 C4 C 0 1 N N N N N N -7.814 12.276 -19.611 -12.155 -0.074 0.764 C6 A1J25 4 A1J25 C7 C5 C 0 1 N N N N N N -6.906 11.043 -19.715 -11.089 0.506 -0.168 C7 A1J25 5 A1J25 C10 C6 C 0 1 N N N N N N -8.503 10.091 -21.454 -12.574 2.456 -0.654 C10 A1J25 6 A1J25 C14 C7 C 0 1 N N N N N N -4.488 10.581 -20.284 -8.789 0.100 -0.806 C14 A1J25 7 A1J25 C15 C8 C 0 1 N N N N N N -3.584 11.425 -19.379 -7.416 -0.327 -0.281 C15 A1J25 8 A1J25 C16 C9 C 0 1 N N N N N N -2.731 12.413 -20.178 -6.408 -0.328 -1.432 C16 A1J25 9 A1J25 C21 C10 C 0 1 Y N N N N N -0.247 15.743 -17.910 -2.715 -2.260 -0.309 C21 A1J25 10 A1J25 C23 C11 C 0 1 Y N N N N N 0.843 16.344 -17.337 -1.496 -2.711 0.150 C23 A1J25 11 A1J25 C24 C12 C 0 1 Y N N N N N 1.847 15.564 -16.769 -0.314 -2.180 -0.372 C24 A1J25 12 A1J25 C25 C13 C 0 1 Y N N N N N 1.719 14.178 -16.799 -0.371 -1.193 -1.360 C25 A1J25 13 A1J25 C26 C14 C 0 1 Y N N N N N 0.616 13.607 -17.380 -1.593 -0.746 -1.816 C26 A1J25 14 A1J25 C28 C15 C 0 1 N N N N N N 3.043 16.190 -16.139 0.994 -2.661 0.118 C28 A1J25 15 A1J25 C31 C16 C 0 1 Y N N N N N 4.666 15.446 -17.974 2.108 -0.454 -0.247 C31 A1J25 16 A1J25 C35 C17 C 0 1 Y N N N N N 8.197 16.714 -15.315 6.134 -2.370 0.874 C35 A1J25 17 A1J25 C36 C18 C 0 1 Y N N N N N 7.145 17.044 -14.478 5.285 -3.474 1.012 C36 A1J25 18 A1J25 C37 C19 C 0 1 Y N N N N N 5.862 16.828 -14.879 3.959 -3.353 0.778 C37 A1J25 19 A1J25 C39 C20 C 0 1 Y N N N N N 9.128 15.811 -17.462 6.476 0.035 0.331 C39 A1J25 20 A1J25 C40 C21 C 0 1 Y N N N N N 9.484 14.447 -17.621 7.069 0.303 -0.898 C40 A1J25 21 A1J25 C42 C22 C 0 1 Y N N N N N 10.565 14.097 -18.443 7.891 1.423 -1.035 C42 A1J25 22 A1J25 N11 N1 N 0 1 N N N N N N -5.748 11.308 -20.638 -9.757 0.100 0.299 N11 A1J25 23 A1J25 C9 C23 C 0 1 N N N N N N -7.683 9.810 -20.200 -11.186 2.033 -0.167 C9 A1J25 24 A1J25 O2 O1 O 0 1 N N N N N N -10.191 11.508 -22.447 -13.431 2.366 1.604 O2 A1J25 25 A1J25 C17 C24 C 0 1 N N N N N N -1.432 12.810 -19.512 -5.056 -0.748 -0.915 C17 A1J25 26 A1J25 O18 O2 O 0 1 N N N N N N -0.373 12.294 -19.855 -4.913 -1.021 0.258 O18 A1J25 27 A1J25 N19 N2 N 0 1 N N N N N N -1.510 13.747 -18.539 -4.006 -0.822 -1.757 N19 A1J25 28 A1J25 C20 C25 C 0 1 Y N N N N N -0.382 14.371 -17.943 -2.769 -1.277 -1.293 C20 A1J25 29 A1J25 F27 F1 F 0 1 N N N N N N 0.485 12.261 -17.413 -1.649 0.209 -2.770 F27 A1J25 30 A1J25 F22 F2 F 0 1 N N N N N N -1.224 16.500 -18.462 -3.859 -2.778 0.191 F22 A1J25 31 A1J25 O29 O3 O 0 1 N N N N N N 2.906 16.876 -15.133 1.104 -3.797 0.547 O29 A1J25 32 A1J25 C30 C26 C 0 1 Y N N N N N 4.364 15.974 -16.734 2.118 -1.805 0.090 C30 A1J25 33 A1J25 C32 C27 C 0 1 Y N N N N N 6.040 15.421 -18.133 3.405 0.010 -0.154 C32 A1J25 34 A1J25 C33 C28 C 0 1 Y N N N N N 6.633 15.933 -16.997 4.210 -1.057 0.240 C33 A1J25 35 A1J25 C34 C29 C 0 1 Y N N N N N 7.967 16.159 -16.577 5.602 -1.151 0.486 C34 A1J25 36 A1J25 N38 N3 N 0 1 Y N N N N N 5.590 16.282 -16.115 3.416 -2.162 0.393 N38 A1J25 37 A1J25 CL41 CL1 CL 0 0 N N N N N N 8.586 13.229 -16.803 6.792 -0.749 -2.251 CL41 A1J25 38 A1J25 N43 N4 N 0 1 Y N N N N N 11.101 12.855 -18.755 8.597 1.944 -2.072 N43 A1J25 39 A1J25 C44 C30 C 0 1 Y N N N N N 12.108 13.096 -19.573 9.214 3.022 -1.683 C44 A1J25 40 A1J25 C45 C31 C 0 1 N N N N N N 12.985 12.063 -20.173 10.095 3.876 -2.558 C45 A1J25 41 A1J25 N46 N5 N 0 1 Y N N N N N 12.245 14.442 -19.801 8.946 3.266 -0.371 N46 A1J25 42 A1J25 C47 C32 C 0 1 N N N N N N 13.245 15.088 -20.649 9.457 4.385 0.425 C47 A1J25 43 A1J25 C48 C33 C 0 1 Y N N N N N 11.262 15.066 -19.080 8.106 2.264 0.071 C48 A1J25 44 A1J25 C49 C34 C 0 1 Y N N N N N 10.937 16.422 -18.945 7.504 1.980 1.291 C49 A1J25 45 A1J25 C50 C35 C 0 1 Y N N N N N 9.865 16.807 -18.133 6.705 0.880 1.422 C50 A1J25 46 A1J25 C51 C36 C 0 1 N N N N N N 9.547 18.302 -18.015 6.056 0.580 2.749 C51 A1J25 47 A1J25 F52 F3 F 0 1 N N N N N N 10.328 19.056 -18.789 4.666 0.574 2.598 F52 A1J25 48 A1J25 F53 F4 F 0 1 N N N N N N 8.295 18.580 -18.370 6.482 -0.672 3.204 F53 A1J25 49 A1J25 F54 F5 F 0 1 N N N N N N 9.705 18.755 -16.772 6.420 1.562 3.678 F54 A1J25 50 A1J25 H57 H1 H 0 1 N N N N N N -12.063 12.011 -23.196 -15.194 3.430 1.769 H57 A1J25 51 A1J25 H55 H2 H 0 1 N N N N N N -12.067 11.033 -21.689 -13.911 3.889 2.915 H55 A1J25 52 A1J25 H56 H3 H 0 1 N N N N N N -11.623 12.773 -21.630 -13.786 4.361 1.203 H56 A1J25 53 A1J25 H4 H4 H 0 1 N N N N N N -10.119 11.047 -20.408 -14.628 2.177 -0.068 H4 A1J25 54 A1J25 H58 H5 H 0 1 N N N N N N -7.920 12.731 -21.708 -14.302 -0.064 0.942 H58 A1J25 55 A1J25 H59 H6 H 0 1 N N N N N N -9.289 13.363 -20.732 -13.702 -0.024 -0.734 H59 A1J25 56 A1J25 H61 H7 H 0 1 N N N N N N -7.189 13.161 -19.418 -11.995 0.300 1.776 H61 A1J25 57 A1J25 H60 H8 H 0 1 N N N N N N -8.514 12.131 -18.775 -12.085 -1.161 0.764 H60 A1J25 58 A1J25 H8 H9 H 0 1 N N N N N N -6.510 10.825 -18.712 -11.249 0.132 -1.179 H8 A1J25 59 A1J25 H65 H10 H 0 1 N N N N N N -9.100 9.201 -21.700 -12.734 2.082 -1.665 H65 A1J25 60 A1J25 H64 H11 H 0 1 N N N N N N -7.821 10.317 -22.287 -12.643 3.543 -0.653 H64 A1J25 61 A1J25 H67 H12 H 0 1 N N N N N N -4.749 9.650 -19.760 -8.720 1.102 -1.229 H67 A1J25 62 A1J25 H66 H13 H 0 1 N N N N N N -3.943 10.341 -21.209 -9.117 -0.599 -1.576 H66 A1J25 63 A1J25 H1 H14 H 0 1 N N N N N N -4.214 11.989 -18.675 -7.088 0.371 0.489 H1 A1J25 64 A1J25 H68 H15 H 0 1 N N N N N N -2.917 10.754 -18.818 -7.485 -1.329 0.142 H68 A1J25 65 A1J25 H85 H16 H 0 1 N N N N N N -3.325 13.324 -20.341 -6.736 -1.026 -2.202 H85 A1J25 66 A1J25 H69 H17 H 0 1 N N N N N N -2.492 11.953 -21.148 -6.340 0.674 -1.856 H69 A1J25 67 A1J25 H71 H18 H 0 1 N N N N N N 0.923 17.421 -17.326 -1.454 -3.474 0.914 H71 A1J25 68 A1J25 H72 H19 H 0 1 N N N N N N 2.487 13.554 -16.366 0.541 -0.781 -1.765 H72 A1J25 69 A1J25 H73 H20 H 0 1 N N N N N N 3.945 15.107 -18.703 1.242 0.125 -0.533 H73 A1J25 70 A1J25 H75 H21 H 0 1 N N N N N N 9.211 16.888 -14.988 7.193 -2.468 1.062 H75 A1J25 71 A1J25 H76 H22 H 0 1 N N N N N N 7.342 17.473 -13.507 5.693 -4.430 1.308 H76 A1J25 72 A1J25 H77 H23 H 0 1 N N N N N N 5.047 17.088 -14.220 3.320 -4.216 0.890 H77 A1J25 73 A1J25 H12 H24 H 0 1 N N N N N N -5.556 12.289 -20.624 -9.791 -0.802 0.751 H12 A1J25 74 A1J25 H62 H26 H 0 1 N N N N N N -8.364 9.485 -19.399 -11.027 2.407 0.844 H62 A1J25 75 A1J25 H63 H27 H 0 1 N N N N N N -6.966 9.006 -20.421 -10.427 2.446 -0.831 H63 A1J25 76 A1J25 H70 H28 H 0 1 N N N N N N -2.418 14.017 -18.220 -4.109 -0.559 -2.685 H70 A1J25 77 A1J25 H74 H29 H 0 1 N N N N N N 6.564 15.059 -19.005 3.736 1.019 -0.352 H74 A1J25 78 A1J25 H78 H30 H 0 1 N N N N N N 12.666 11.067 -19.831 9.492 4.645 -3.039 H78 A1J25 79 A1J25 H79 H31 H 0 1 N N N N N N 12.914 12.114 -21.270 10.866 4.346 -1.947 H79 A1J25 80 A1J25 H80 H32 H 0 1 N N N N N N 14.026 12.241 -19.864 10.564 3.252 -3.319 H80 A1J25 81 A1J25 H83 H33 H 0 1 N N N N N N 13.096 16.178 -20.628 8.769 5.227 0.351 H83 A1J25 82 A1J25 H81 H34 H 0 1 N N N N N N 14.252 14.849 -20.276 9.546 4.079 1.467 H81 A1J25 83 A1J25 H82 H35 H 0 1 N N N N N N 13.140 14.724 -21.682 10.436 4.682 0.049 H82 A1J25 84 A1J25 H84 H36 H 0 1 N N N N N N 11.514 17.170 -19.468 7.671 2.628 2.138 H84 A1J25 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1J25 O2 C1 SING N N 1 A1J25 O2 C3 SING N N 2 A1J25 C10 C3 SING N N 3 A1J25 C10 C9 SING N N 4 A1J25 C3 C5 SING N N 5 A1J25 C5 C6 SING N N 6 A1J25 C47 N46 SING N N 7 A1J25 N11 C14 SING N N 8 A1J25 N11 C7 SING N N 9 A1J25 C14 C15 SING N N 10 A1J25 C9 C7 SING N N 11 A1J25 C16 C17 SING N N 12 A1J25 C16 C15 SING N N 13 A1J25 C45 C44 SING N N 14 A1J25 O18 C17 DOUB N N 15 A1J25 N46 C44 SING Y N 16 A1J25 N46 C48 SING Y N 17 A1J25 C7 C6 SING N N 18 A1J25 C44 N43 DOUB Y N 19 A1J25 C17 N19 SING N N 20 A1J25 C48 C49 DOUB Y N 21 A1J25 C48 C42 SING Y N 22 A1J25 C49 C50 SING Y N 23 A1J25 F52 C51 SING N N 24 A1J25 N43 C42 SING Y N 25 A1J25 N19 C20 SING N N 26 A1J25 F22 C21 SING N N 27 A1J25 C42 C40 DOUB Y N 28 A1J25 F53 C51 SING N N 29 A1J25 C50 C51 SING N N 30 A1J25 C50 C39 DOUB Y N 31 A1J25 C32 C31 SING Y N 32 A1J25 C32 C33 DOUB Y N 33 A1J25 C51 F54 SING N N 34 A1J25 C31 C30 DOUB Y N 35 A1J25 C20 C21 DOUB Y N 36 A1J25 C20 C26 SING Y N 37 A1J25 C21 C23 SING Y N 38 A1J25 C40 C39 SING Y N 39 A1J25 C40 CL41 SING N N 40 A1J25 C39 C34 SING N N 41 A1J25 F27 C26 SING N N 42 A1J25 C26 C25 DOUB Y N 43 A1J25 C23 C24 DOUB Y N 44 A1J25 C33 C34 SING Y N 45 A1J25 C33 N38 SING Y N 46 A1J25 C25 C24 SING Y N 47 A1J25 C24 C28 SING N N 48 A1J25 C30 C28 SING N N 49 A1J25 C30 N38 SING Y N 50 A1J25 C34 C35 DOUB Y N 51 A1J25 C28 O29 DOUB N N 52 A1J25 N38 C37 SING Y N 53 A1J25 C35 C36 SING Y N 54 A1J25 C37 C36 DOUB Y N 55 A1J25 C1 H57 SING N N 56 A1J25 C1 H55 SING N N 57 A1J25 C1 H56 SING N N 58 A1J25 C3 H4 SING N N 59 A1J25 C5 H58 SING N N 60 A1J25 C5 H59 SING N N 61 A1J25 C6 H61 SING N N 62 A1J25 C6 H60 SING N N 63 A1J25 C7 H8 SING N N 64 A1J25 C10 H65 SING N N 65 A1J25 C10 H64 SING N N 66 A1J25 C14 H67 SING N N 67 A1J25 C14 H66 SING N N 68 A1J25 C15 H1 SING N N 69 A1J25 C15 H68 SING N N 70 A1J25 C16 H85 SING N N 71 A1J25 C16 H69 SING N N 72 A1J25 C23 H71 SING N N 73 A1J25 C25 H72 SING N N 74 A1J25 C31 H73 SING N N 75 A1J25 C35 H75 SING N N 76 A1J25 C36 H76 SING N N 77 A1J25 C37 H77 SING N N 78 A1J25 N11 H12 SING N N 79 A1J25 C9 H62 SING N N 80 A1J25 C9 H63 SING N N 81 A1J25 N19 H70 SING N N 82 A1J25 C32 H74 SING N N 83 A1J25 C45 H78 SING N N 84 A1J25 C45 H79 SING N N 85 A1J25 C45 H80 SING N N 86 A1J25 C47 H83 SING N N 87 A1J25 C47 H81 SING N N 88 A1J25 C47 H82 SING N N 89 A1J25 C49 H84 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J25 InChI InChI 1.06 "InChI=1S/C36H35ClF5N5O3/c1-19-44-34-29(46(19)2)18-24(36(40,41)42)31(32(34)37)23-6-5-15-47-27(23)12-13-28(47)35(49)20-16-25(38)33(26(39)17-20)45-30(48)7-4-14-43-21-8-10-22(50-3)11-9-21/h5-6,12-13,15-18,21-22,43H,4,7-11,14H2,1-3H3,(H,45,48)/t21-,22+" A1J25 InChIKey InChI 1.06 QRQLCFJKMUXTHW-SZPZYZBQSA-N A1J25 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1CC[C@@H](CC1)NCCCC(=O)Nc2c(F)cc(cc2F)C(=O)c3ccc4n3cccc4c5c(Cl)c6nc(C)n(C)c6cc5C(F)(F)F" A1J25 SMILES CACTVS 3.385 "CO[CH]1CC[CH](CC1)NCCCC(=O)Nc2c(F)cc(cc2F)C(=O)c3ccc4n3cccc4c5c(Cl)c6nc(C)n(C)c6cc5C(F)(F)F" A1J25 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nc2c(n1C)cc(c(c2Cl)c3cccn4c3ccc4C(=O)c5cc(c(c(c5)F)NC(=O)CCCNC6CCC(CC6)OC)F)C(F)(F)F" A1J25 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nc2c(n1C)cc(c(c2Cl)c3cccn4c3ccc4C(=O)c5cc(c(c(c5)F)NC(=O)CCCNC6CCC(CC6)OC)F)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1J25 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[4-[8-[4-chloranyl-1,2-dimethyl-6-(trifluoromethyl)benzimidazol-5-yl]indolizin-3-yl]carbonyl-2,6-bis(fluoranyl)phenyl]-4-[(4-methoxycyclohexyl)amino]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J25 "Create component" 2026-03-23 PDBE A1J25 "Modify PCM" 2026-03-23 PDBE A1J25 "Initial release" 2026-11-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1J25 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #