data_A1J46 # _chem_comp.id A1J46 _chem_comp.name "3,7-dimethyl-9,11-bis(2-methylphenyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 N2 O4 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date 2026-04-14 _chem_comp.pdbx_modified_date 2026-09-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 543.521 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details MetalCoord _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 29MY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type "metal-containing ligand" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J46 RU1 RU1 RU ? 0 N N N N N N -40.079 -7.756 -20.268 -0.897 -0.534 1.896 RU1 A1J46 1 A1J46 RU2 RU2 RU ? 0 N N N N N N -39.658 -9.497 -18.823 1.738 0.616 1.715 RU2 A1J46 2 A1J46 O1 O1 O -1 1 N N N N N N -42.060 -8.238 -20.393 -1.085 1.032 3.331 O1 A1J46 3 A1J46 O2 O2 O 0 1 N N N N N N -41.656 -9.911 -19.012 0.560 2.125 2.376 O2 A1J46 4 A1J46 O3 O3 O 0 1 N N N N N N -39.799 -9.064 -21.833 0.335 -2.053 2.350 O3 A1J46 5 A1J46 O4 O4 O -1 1 N N N N N N -39.392 -10.731 -20.445 1.950 -0.910 3.293 O4 A1J46 6 A1J46 N2 N1 N -1 1 N N N N N N -39.941 -8.188 -17.283 1.245 0.094 -0.405 N2 A1J46 7 A1J46 N1 N2 N 0 1 N N N N N N -40.384 -6.450 -18.735 -1.106 -0.079 -0.221 N1 A1J46 8 A1J46 C1 C1 C 0 1 N N N N N N -42.434 -9.233 -19.743 -0.019 1.679 3.387 C1 A1J46 9 A1J46 C7 C2 C 0 1 N N N N N N -40.158 -6.906 -17.539 0.003 0.400 -0.812 C7 A1J46 10 A1J46 C3 C3 C 0 1 N N N N N N -39.525 -10.260 -21.606 0.960 -1.665 3.356 C3 A1J46 11 A1J46 C2 C4 C 0 1 N N N N N N -43.869 -9.608 -19.846 0.611 1.922 4.731 C2 A1J46 12 A1J46 C20 C5 C 0 1 Y N N N N N -40.376 -7.602 -14.997 3.595 -0.394 -0.700 C20 A1J46 13 A1J46 C9 C6 C 0 1 Y N N N N N -41.319 -4.504 -19.847 -3.425 -0.798 -0.210 C9 A1J46 14 A1J46 C10 C7 C 0 1 Y N N N N N -41.448 -3.148 -19.992 -4.754 -0.570 -0.570 C10 A1J46 15 A1J46 C15 C8 C 0 1 Y N N N N N -39.608 -8.301 -15.924 2.486 0.397 -1.038 C15 A1J46 16 A1J46 C8 C9 C 0 1 Y N N N N N -40.530 -5.015 -18.884 -2.462 0.148 -0.603 C8 A1J46 17 A1J46 C13 C10 C 0 1 Y N N N N N -39.808 -4.161 -17.994 -2.878 1.299 -1.273 C13 A1J46 18 A1J46 C16 C11 C 0 1 Y N N N N N -38.501 -9.039 -15.502 2.663 1.484 -1.894 C16 A1J46 19 A1J46 C17 C12 C 0 1 Y N N N N N -38.201 -9.097 -14.171 3.892 1.752 -2.458 C17 A1J46 20 A1J46 C11 C13 C 0 1 Y N N N N N -40.771 -2.302 -19.144 -5.139 0.560 -1.252 C11 A1J46 21 A1J46 C12 C14 C 0 1 Y N N N N N -39.943 -2.814 -18.141 -4.202 1.491 -1.603 C12 A1J46 22 A1J46 C4 C15 C 0 1 N N N N N N -39.334 -11.203 -22.745 0.497 -2.111 4.716 C4 A1J46 23 A1J46 C18 C16 C 0 1 Y N N N N N -38.960 -8.429 -13.232 4.971 0.961 -2.158 C18 A1J46 24 A1J46 C19 C17 C 0 1 Y N N N N N -40.050 -7.679 -13.625 4.821 -0.100 -1.296 C19 A1J46 25 A1J46 C14 C18 C 0 1 N N N N N N -42.022 -5.388 -20.713 -3.051 -2.062 0.520 C14 A1J46 26 A1J46 C21 C19 C 0 1 N N N N N N -41.503 -6.830 -15.457 3.464 -1.574 0.226 C21 A1J46 27 A1J46 H2 H2 H 0 1 N N N N N N -40.147 -6.207 -16.715 -0.096 0.964 -1.562 H2 A1J46 28 A1J46 H5 H5 H 0 1 N N N N N N -44.063 -10.492 -19.221 0.048 1.554 5.428 H5 A1J46 29 A1J46 H6 H6 H 0 1 N N N N N N -44.492 -8.771 -19.500 0.717 2.874 4.874 H6 A1J46 30 A1J46 H7 H7 H 0 1 N N N N N N -44.113 -9.838 -20.893 1.481 1.495 4.765 H7 A1J46 31 A1J46 H8 H8 H 0 1 N N N N N N -42.079 -2.744 -20.770 -5.408 -1.209 -0.333 H8 A1J46 32 A1J46 H9 H9 H 0 1 N N N N N N -39.172 -4.573 -17.225 -2.244 1.947 -1.522 H9 A1J46 33 A1J46 H10 H10 H 0 1 N N N N N N -37.887 -9.560 -16.222 1.930 2.033 -2.108 H10 A1J46 34 A1J46 H11 H11 H 0 1 N N N N N N -37.351 -9.679 -13.846 3.988 2.481 -3.048 H11 A1J46 35 A1J46 H12 H12 H 0 1 N N N N N N -40.880 -1.233 -19.254 -6.046 0.692 -1.475 H12 A1J46 36 A1J46 H13 H13 H 0 1 N N N N N N -39.411 -2.142 -17.484 -4.460 2.269 -2.070 H13 A1J46 37 A1J46 H14 H14 H 0 1 N N N N N N -39.473 -10.665 -23.694 -0.314 -2.633 4.631 H14 A1J46 38 A1J46 H15 H15 H 0 1 N N N N N N -38.318 -11.622 -22.707 0.322 -1.335 5.271 H15 A1J46 39 A1J46 H16 H16 H 0 1 N N N N N N -40.070 -12.018 -22.674 1.184 -2.653 5.132 H16 A1J46 40 A1J46 H17 H17 H 0 1 N N N N N N -38.700 -8.493 -12.186 5.814 1.143 -2.542 H17 A1J46 41 A1J46 H18 H18 H 0 1 N N N N N N -40.647 -7.157 -12.892 5.569 -0.639 -1.096 H18 A1J46 42 A1J46 H19 H19 H 0 1 N N N N N N -41.401 -5.611 -21.593 -2.241 -2.438 0.137 H19 A1J46 43 A1J46 H20 H20 H 0 1 N N N N N N -42.249 -6.322 -20.178 -3.767 -2.715 0.444 H20 A1J46 44 A1J46 H21 H21 H 0 1 N N N N N N -42.960 -4.914 -21.037 -2.901 -1.863 1.459 H21 A1J46 45 A1J46 H22 H22 H 0 1 N N N N N N -42.402 -7.463 -15.467 4.247 -2.146 0.149 H22 A1J46 46 A1J46 H23 H23 H 0 1 N N N N N N -41.663 -5.977 -14.781 2.675 -2.092 -0.007 H23 A1J46 47 A1J46 H24 H24 H 0 1 N N N N N N -41.304 -6.460 -16.474 3.388 -1.261 1.141 H24 A1J46 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_metal_coordination_flag _chem_comp_bond.pdbx_metal_pi_flag A1J46 RU1 RU2 SING N N 1 Y N A1J46 RU1 O1 SING N N 2 Y N A1J46 RU2 O2 SING N N 3 Y N A1J46 RU1 O3 SING N N 4 Y N A1J46 RU2 O4 SING N N 5 Y N A1J46 RU2 N2 SING N N 6 Y N A1J46 RU1 N1 SING N N 7 Y N A1J46 N2 C7 SING N N 8 N N A1J46 N1 C7 DOUB N N 9 N N A1J46 O3 C3 DOUB N N 10 N N A1J46 O4 C3 SING N N 11 N N A1J46 O1 C1 SING N N 12 N N A1J46 O2 C1 DOUB N N 13 N N A1J46 C9 C10 SING Y N 14 N N A1J46 N2 C15 SING N N 15 N N A1J46 C1 C2 SING N N 16 N N A1J46 C20 C15 SING Y N 17 N N A1J46 N1 C8 SING N N 18 N N A1J46 C9 C8 DOUB Y N 19 N N A1J46 C8 C13 SING Y N 20 N N A1J46 C15 C16 DOUB Y N 21 N N A1J46 C16 C17 SING Y N 22 N N A1J46 C10 C11 DOUB Y N 23 N N A1J46 C9 C14 SING N N 24 N N A1J46 C13 C12 DOUB Y N 25 N N A1J46 C11 C12 SING Y N 26 N N A1J46 C3 C4 SING N N 27 N N A1J46 C17 C18 DOUB Y N 28 N N A1J46 C20 C19 DOUB Y N 29 N N A1J46 C18 C19 SING Y N 30 N N A1J46 C20 C21 SING N N 31 N N A1J46 C7 H2 SING N N 32 N N A1J46 C2 H5 SING N N 33 N N A1J46 C2 H6 SING N N 34 N N A1J46 C2 H7 SING N N 35 N N A1J46 C10 H8 SING N N 36 N N A1J46 C13 H9 SING N N 37 N N A1J46 C16 H10 SING N N 38 N N A1J46 C17 H11 SING N N 39 N N A1J46 C11 H12 SING N N 40 N N A1J46 C12 H13 SING N N 41 N N A1J46 C4 H14 SING N N 42 N N A1J46 C4 H15 SING N N 43 N N A1J46 C4 H16 SING N N 44 N N A1J46 C18 H17 SING N N 45 N N A1J46 C19 H18 SING N N 46 N N A1J46 C14 H19 SING N N 47 N N A1J46 C14 H20 SING N N 48 N N A1J46 C14 H21 SING N N 49 N N A1J46 C21 H22 SING N N 50 N N A1J46 C21 H23 SING N N 51 N N A1J46 C21 H24 SING N N 52 N N # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J46 SMILES ACDLabs 14.52 "Cc1ccccc1N1=CN(c2ccccc2C)[Ru+2]23[O-]C(C)=O[Ru+2]13[O-]C(C)=O2" A1J46 InChI InChI 1.06 "InChI=1S/C15H15N2.2C2H4O2.2Ru/c1-12-7-3-5-9-14(12)16-11-17-15-10-6-4-8-13(15)2;2*1-2(3)4;;/h3-11H,1-2H3;2*1H3,(H,3,4);;/q-1;;;+2;+3/p-2" A1J46 InChIKey InChI 1.06 QIHNMEWOGLLIPX-UHFFFAOYSA-L A1J46 SMILES_CANONICAL CACTVS 3.385 "[Ru++].CC(=O)[O-].CC(=O)[O-].Cc1ccccc1N=CN([Ru++])c2ccccc2C" A1J46 SMILES CACTVS 3.385 "[Ru++].CC(=O)[O-].CC(=O)[O-].Cc1ccccc1N=CN([Ru++])c2ccccc2C" A1J46 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccccc1[N]2=CN([Ru+2]34[Ru+2]2([O-]C(=O3)C)O=C([O-]4)C)c5ccccc5C" A1J46 SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1ccccc1[N]2=CN([Ru+2]34[Ru+2]2([O-]C(=O3)C)O=C([O-]4)C)c5ccccc5C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1J46 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3,7-dimethyl-9,11-bis(2-methylphenyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" A1J46 "SYSTEMATIC NAME" ACDLabs 14.52 "(mu-acetato-kappaO:kappaO')(mu-acetato-kappaO':kappaO)-{mu-[2-methyl-N-({[(1P)-2-methylphenyl]imino-kappaN}methyl)benzen-1-aminido-kappaN]}diruthenium(2+)(Ru-Ru)" # loop_ _pdbx_chem_comp_atom_coordination.geometry_id _pdbx_chem_comp_atom_coordination.comp_id _pdbx_chem_comp_atom_coordination.atom_id _pdbx_chem_comp_atom_coordination.number _pdbx_chem_comp_atom_coordination.geometry_calculated _pdbx_chem_comp_atom_coordination.geometry_generic _pdbx_chem_comp_atom_coordination.geometry_abbr _pdbx_chem_comp_atom_coordination.provenance _pdbx_chem_comp_atom_coordination.representative_entry_id 1 A1J46 RU1 4 "square plane" "square planar" SPL FindGeo 29MY 2 A1J46 RU1 5 square-pyramid "square pyramidal" SQP MetalCoord 29MY 3 A1J46 RU2 4 square-planar "square planar" SPL MetalCoord 29MY # loop_ _pdbx_chem_comp_atom_coordination_sphere.id _pdbx_chem_comp_atom_coordination_sphere.geometry_id _pdbx_chem_comp_atom_coordination_sphere.comp_id _pdbx_chem_comp_atom_coordination_sphere.atom_id _pdbx_chem_comp_atom_coordination_sphere.descriptor _pdbx_chem_comp_atom_coordination_sphere.provenance _pdbx_chem_comp_atom_coordination_sphere.representative_entry_id 1 2 A1J46 RU1 "@SQP{Ru,N,O,O,O,C}" MetalCoord 29MY 2 3 A1J46 RU2 "@SPL{Ru,N,O,O,O}" MetalCoord 29MY # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession _pdbx_chem_comp_pcm.position 1 A1J46 ASP None "Metal coordination" "Any position" RU1 OD1 ? ? "Amino-acid side chain" 2 A1J46 ASP None "Metal coordination" "Any position" RU2 OD1 ? ? "Amino-acid side chain" 3 A1J46 ASP None "Metal coordination" "Any position" RU1 OD2 ? ? "Amino-acid side chain" 4 A1J46 ASP None "Metal coordination" "Any position" RU2 OD2 ? ? "Amino-acid side chain" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J46 "Create component" 2026-04-14 PDBE A1J46 "Other modification" 2026-07-28 RCSB A1J46 "Other modification" 2026-07-31 RCSB A1J46 "Initial release" 2026-09-02 RCSB A1J46 "Other modification" 2026-09-01 RCSB #