data_A1J4C # _chem_comp.id A1J4C _chem_comp.name "3,7-dimethyl-9,11-bis(4-methylphenyl)-1,5-bis(oxidanyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{5},5$l^{5}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 N2 O6 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date 2026-04-01 _chem_comp.pdbx_modified_date 2026-09-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 605.589 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details MetalCoord _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 29NX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type "metal-containing ligand" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J4C RU1 RU1 RU ? 0 N N N N N N -35.547 -3.653 -21.506 -0.832 -0.100 -1.022 RU1 A1J4C 1 A1J4C RU2 RU2 RU ? 0 N N N N N N -37.540 -2.988 -22.398 1.269 1.103 -1.425 RU2 A1J4C 2 A1J4C O6 O1 O -1 1 N N N N N N -37.359 -1.305 -21.251 0.614 3.106 -1.669 O6 A1J4C 3 A1J4C O1 O2 O -1 1 N N N N N N -35.688 -5.381 -22.593 1.346 -1.246 -1.587 O1 A1J4C 4 A1J4C O2 O3 O -1 1 N N N N N N -37.663 -4.731 -23.448 2.600 0.256 -2.755 O2 A1J4C 5 A1J4C O5 O4 O -1 1 N N N N N N -35.416 -1.970 -20.379 -0.259 1.954 0.030 O5 A1J4C 6 A1J4C O3 O5 O -1 1 N N N N N N -36.673 -4.404 -19.963 -2.218 1.069 -2.302 O3 A1J4C 7 A1J4C O4 O6 O -1 1 N N N N N N -38.560 -3.803 -20.814 -0.319 0.312 -3.035 O4 A1J4C 8 A1J4C N2 N1 N -1 1 N N N N N N -36.426 -2.142 -23.888 1.100 -0.211 0.960 N2 A1J4C 9 A1J4C N1 N2 N 0 1 N N N N N N -34.403 -2.816 -22.982 -1.206 -0.605 0.825 N1 A1J4C 10 A1J4C C1 C1 C 0 1 N N R N N N -36.700 -5.573 -23.356 2.229 -1.107 -2.698 C1 A1J4C 11 A1J4C C7 C2 C 0 1 N N N N N N -35.101 -2.212 -23.902 -0.059 -0.627 1.513 C7 A1J4C 12 A1J4C C5 C3 C 0 1 N N R N N N -36.348 -1.118 -20.461 -0.343 3.199 -0.637 C5 A1J4C 13 A1J4C C2 C4 C 0 1 N N N N N N -36.747 -6.831 -24.148 3.385 -2.005 -2.617 C2 A1J4C 14 A1J4C C20 C5 C 0 1 Y N N N N N -35.774 -1.753 -26.129 3.432 0.285 0.719 C20 A1J4C 15 A1J4C C9 C6 C 0 1 Y N N N N N -32.745 -3.353 -24.649 -2.914 -1.297 2.508 C9 A1J4C 16 A1J4C C10 C7 C 0 1 Y N N N N N -31.469 -3.525 -25.116 -4.232 -1.603 2.795 C10 A1J4C 17 A1J4C C15 C8 C 0 1 Y N N N N N -36.705 -1.517 -25.116 2.410 -0.196 1.528 C15 A1J4C 18 A1J4C C8 C9 C 0 1 Y N N N N N -33.013 -3.017 -23.372 -2.538 -0.934 1.218 C8 A1J4C 19 A1J4C C6 C10 C 0 1 N N N N N N -36.113 0.107 -19.587 -0.134 4.346 0.252 C6 A1J4C 20 A1J4C C13 C11 C 0 1 Y N N N N N -31.912 -2.822 -22.474 -3.519 -0.901 0.236 C13 A1J4C 21 A1J4C C16 C12 C 0 1 Y N N N N N -37.741 -0.617 -25.348 2.739 -0.614 2.815 C16 A1J4C 22 A1J4C C17 C13 C 0 1 Y N N N N N -37.866 -0.037 -26.579 4.046 -0.551 3.262 C17 A1J4C 23 A1J4C C11 C14 C 0 1 Y N N N N N -30.401 -3.355 -24.268 -5.213 -1.566 1.823 C11 A1J4C 24 A1J4C C14 C15 C 0 1 N N N N N N -29.081 -3.549 -24.765 -6.650 -1.907 2.148 C14 A1J4C 25 A1J4C C12 C16 C 0 1 Y N N N N N -30.640 -3.009 -22.934 -4.832 -1.213 0.543 C12 A1J4C 26 A1J4C C18 C17 C 0 1 Y N N N N N -36.965 -0.280 -27.592 5.066 -0.078 2.459 C18 A1J4C 27 A1J4C C19 C18 C 0 1 Y N N N N N -35.900 -1.131 -27.388 4.733 0.339 1.185 C19 A1J4C 28 A1J4C C21 C19 C 0 1 N N N N N N -37.088 0.344 -28.884 6.491 -0.012 2.960 C21 A1J4C 29 A1J4C H3 H3 H 0 1 N N N N N N -36.177 -5.069 -24.182 1.741 -1.328 -3.510 H3 A1J4C 30 A1J4C H4 H4 H 0 1 N N N N N N -34.573 -1.743 -24.719 -0.061 -0.944 2.401 H4 A1J4C 31 A1J4C H6 H6 H 0 1 N N N N N N -36.886 -1.612 -19.639 -1.226 3.278 -1.039 H6 A1J4C 32 A1J4C H7 H7 H 0 1 N N N N N N -37.668 -6.852 -24.749 3.078 -2.925 -2.601 H7 A1J4C 33 A1J4C H8 H8 H 0 1 N N N N N N -35.873 -6.877 -24.814 3.885 -1.814 -1.806 H8 A1J4C 34 A1J4C H9 H9 H 0 1 N N N N N N -36.735 -7.694 -23.466 3.955 -1.866 -3.391 H9 A1J4C 35 A1J4C H10 H10 H 0 1 N N N N N N -34.946 -2.421 -25.946 3.237 0.573 -0.153 H10 A1J4C 36 A1J4C H11 H11 H 0 1 N N N N N N -33.570 -3.492 -25.332 -2.270 -1.328 3.194 H11 A1J4C 37 A1J4C H12 H12 H 0 1 N N N N N N -31.302 -3.794 -26.149 -4.467 -1.842 3.678 H12 A1J4C 38 A1J4C H13 H13 H 0 1 N N N N N N -35.174 -0.016 -19.027 -0.168 5.166 -0.267 H13 A1J4C 39 A1J4C H14 H14 H 0 1 N N N N N N -36.046 1.003 -20.222 0.734 4.268 0.680 H14 A1J4C 40 A1J4C H15 H15 H 0 1 N N N N N N -36.949 0.219 -18.881 -0.831 4.359 0.928 H15 A1J4C 41 A1J4C H16 H16 H 0 1 N N N N N N -32.086 -2.531 -21.449 -3.288 -0.664 -0.643 H16 A1J4C 42 A1J4C H17 H17 H 0 1 N N N N N N -38.441 -0.379 -24.561 2.069 -0.943 3.387 H17 A1J4C 43 A1J4C H18 H18 H 0 1 N N N N N N -38.695 0.631 -26.763 4.247 -0.841 4.138 H18 A1J4C 44 A1J4C H19 H19 H 0 1 N N N N N N -28.690 -2.596 -25.150 -7.247 -1.397 1.575 H19 A1J4C 45 A1J4C H20 H20 H 0 1 N N N N N N -28.433 -3.910 -23.953 -6.839 -1.690 3.078 H20 A1J4C 46 A1J4C H21 H21 H 0 1 N N N N N N -29.100 -4.292 -25.576 -6.800 -2.856 2.004 H21 A1J4C 47 A1J4C H22 H22 H 0 1 N N N N N N -29.806 -2.888 -22.258 -5.483 -1.181 -0.139 H22 A1J4C 48 A1J4C H23 H23 H 0 1 N N N N N N -35.181 -1.316 -28.172 5.412 0.668 0.617 H23 A1J4C 49 A1J4C H24 H24 H 0 1 N N N N N N -36.542 1.299 -28.884 7.108 -0.122 2.216 H24 A1J4C 50 A1J4C H25 H25 H 0 1 N N N N N N -36.666 -0.320 -29.653 6.645 -0.721 3.609 H25 A1J4C 51 A1J4C H26 H26 H 0 1 N N N N N N -38.150 0.530 -29.102 6.648 0.849 3.383 H26 A1J4C 52 A1J4C C3 C3 C 0 1 N N N N N N ? ? ? -1.408 1.104 -3.448 C3 A1J4C 53 A1J4C C4 C4 C 0 1 N N N N N N ? ? ? -2.062 0.618 -4.667 C4 A1J4C 54 A1J4C H28 H28 H 0 1 N N N N N N ? ? ? -2.383 -0.287 -4.521 H28 A1J4C 55 A1J4C H27 H27 H 0 1 N N N N N N ? ? ? -1.423 0.622 -5.398 H27 A1J4C 56 A1J4C H2 H2 H 0 1 N N N N N N ? ? ? -2.810 1.197 -4.884 H2 A1J4C 57 A1J4C H1 H1 H 0 1 N N N N N N ? ? ? -1.102 2.016 -3.596 H1 A1J4C 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_metal_coordination_flag _chem_comp_bond.pdbx_metal_pi_flag A1J4C RU1 RU2 SING N N 1 Y N A1J4C RU2 O6 SING N N 2 Y N A1J4C RU1 O1 SING N N 3 Y N A1J4C RU2 O2 SING N N 4 Y N A1J4C RU1 O5 SING N N 5 Y N A1J4C RU1 O3 SING N N 6 Y N A1J4C RU2 O4 SING N N 7 Y N A1J4C RU2 N2 SING N N 8 Y N A1J4C RU1 N1 SING N N 9 Y N A1J4C N2 C7 SING N N 10 N N A1J4C N1 C7 DOUB N N 11 N N A1J4C O6 C5 SING N N 12 N N A1J4C O5 C5 SING N N 13 N N A1J4C C9 C10 SING Y N 14 N N A1J4C N2 C15 SING N N 15 N N A1J4C C1 C2 SING N N 16 N N A1J4C C20 C15 SING Y N 17 N N A1J4C N1 C8 SING N N 18 N N A1J4C C9 C8 DOUB Y N 19 N N A1J4C C5 C6 SING N N 20 N N A1J4C C8 C13 SING Y N 21 N N A1J4C C15 C16 DOUB Y N 22 N N A1J4C C16 C17 SING Y N 23 N N A1J4C C10 C11 DOUB Y N 24 N N A1J4C C11 C14 SING N N 25 N N A1J4C C13 C12 DOUB Y N 26 N N A1J4C C11 C12 SING Y N 27 N N A1J4C C17 C18 DOUB Y N 28 N N A1J4C C20 C19 DOUB Y N 29 N N A1J4C C18 C19 SING Y N 30 N N A1J4C C18 C21 SING N N 31 N N A1J4C C1 O1 SING N N 32 N N A1J4C C1 O2 SING N N 33 N N A1J4C C1 H3 SING N N 34 N N A1J4C C7 H4 SING N N 35 N N A1J4C C5 H6 SING N N 36 N N A1J4C C2 H7 SING N N 37 N N A1J4C C2 H8 SING N N 38 N N A1J4C C2 H9 SING N N 39 N N A1J4C C20 H10 SING N N 40 N N A1J4C C9 H11 SING N N 41 N N A1J4C C10 H12 SING N N 42 N N A1J4C C6 H13 SING N N 43 N N A1J4C C6 H14 SING N N 44 N N A1J4C C6 H15 SING N N 45 N N A1J4C C13 H16 SING N N 46 N N A1J4C C16 H17 SING N N 47 N N A1J4C C17 H18 SING N N 48 N N A1J4C C14 H19 SING N N 49 N N A1J4C C14 H20 SING N N 50 N N A1J4C C14 H21 SING N N 51 N N A1J4C C12 H22 SING N N 52 N N A1J4C C19 H23 SING N N 53 N N A1J4C C21 H24 SING N N 54 N N A1J4C C21 H25 SING N N 55 N N A1J4C C21 H26 SING N N 56 N N A1J4C O4 C3 SING N N 57 N N A1J4C O3 C3 SING N N 58 N N A1J4C C3 C4 SING N N 59 N N A1J4C C4 H28 SING N N 60 N N A1J4C C4 H27 SING N N 61 N N A1J4C C4 H2 SING N N 62 N N A1J4C C3 H1 SING N N 63 N N # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J4C InChI InChI 1.06 "InChI=1S/C15H15N2.3C2H4O2.2Ru/c1-12-3-7-14(8-4-12)16-11-17-15-9-5-13(2)6-10-15;3*1-2(3)4;;/h3-11H,1-2H3;3*2H,1H3;;/q-1;3*-2;+3;+4" A1J4C InChIKey InChI 1.06 YEUIAKAJLVQSEG-UHFFFAOYSA-N A1J4C SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[Ru]2O[C@@H](C)O[Ru](O1)(OC(C)O2)N(C=Nc3ccc(C)cc3)c4ccc(C)cc4" A1J4C SMILES CACTVS 3.385 "C[CH]1O[Ru]2O[CH](C)O[Ru](O1)(OC(C)O2)N(C=Nc3ccc(C)cc3)c4ccc(C)cc4" A1J4C SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(cc1)[N]2=CN([Ru]345[Ru]2(OC(O3)C)(OC(O4)C)OC(O5)C)c6ccc(cc6)C" A1J4C SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(cc1)[N]2=CN([Ru]345[Ru]2(OC(O3)C)(OC(O4)C)OC(O5)C)c6ccc(cc6)C" # _pdbx_chem_comp_identifier.comp_id A1J4C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "3,7,10-trimethyl-12,14-bis(4-methylphenyl)-2,4,6,8,9,11-hexaoxa-12$l^{4},14-diaza-1$l^{5},5$l^{5}-diruthenatetracyclo[3.3.3.3^{1,5}.0^{1,5}]tetradec-12-ene" # loop_ _pdbx_chem_comp_atom_coordination.geometry_id _pdbx_chem_comp_atom_coordination.comp_id _pdbx_chem_comp_atom_coordination.atom_id _pdbx_chem_comp_atom_coordination.number _pdbx_chem_comp_atom_coordination.geometry_calculated _pdbx_chem_comp_atom_coordination.geometry_generic _pdbx_chem_comp_atom_coordination.geometry_abbr _pdbx_chem_comp_atom_coordination.provenance _pdbx_chem_comp_atom_coordination.representative_entry_id 1 A1J4C RU1 4 "square plane" "square planar" SPL FindGeo 29NX 1 A1J4C RU1 4 square-planar "square planar" SPL MetalCoord 29NX 2 A1J4C RU1 5 "square pyramid" "square pyramidal" SPY FindGeo 29NX 2 A1J4C RU1 5 square-pyramid "square pyramidal" SQP MetalCoord 29NX 3 A1J4C RU2 4 "square plane" "square planar" SPL FindGeo 29NX 3 A1J4C RU2 4 square-planar "square planar" SPL MetalCoord 29NX 4 A1J4C RU2 5 square-pyramid "square pyramidal" SQP MetalCoord 29NX # loop_ _pdbx_chem_comp_atom_coordination_sphere.id _pdbx_chem_comp_atom_coordination_sphere.geometry_id _pdbx_chem_comp_atom_coordination_sphere.comp_id _pdbx_chem_comp_atom_coordination_sphere.atom_id _pdbx_chem_comp_atom_coordination_sphere.descriptor _pdbx_chem_comp_atom_coordination_sphere.provenance _pdbx_chem_comp_atom_coordination_sphere.representative_entry_id 1 1 A1J4C RU1 "@SPL{Ru,N,O,O,O}" MetalCoord 29NX 2 2 A1J4C RU1 "@SQP{Ru,N,O,O,O,O}" MetalCoord 29NX 3 3 A1J4C RU2 "@SPL{Ru,N,O,O,O}" MetalCoord 29NX 4 4 A1J4C RU2 "@SQP{Ru,N,O,O,O,O}" MetalCoord 29NX # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession _pdbx_chem_comp_pcm.position 1 A1J4C ASP None "Metal coordination" "Any position" RU1 OD1 ? ? "Amino-acid side chain" 2 A1J4C ASP None "Metal coordination" "Any position" RU2 OD2 ? ? "Amino-acid side chain" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J4C "Create component" 2026-04-01 PDBE A1J4C "Other modification" 2026-07-28 RCSB A1J4C "Other modification" 2026-07-31 RCSB A1J4C "Initial release" 2026-09-02 RCSB A1J4C "Other modification" 2026-09-01 RCSB #