data_A1J4F # _chem_comp.id A1J4F _chem_comp.name "9-oxidanyl-6-[(1-phenylcyclohexyl)methyl]-2-propan-2-yl-3,4-dihydropyrazino[1,2-c]pyrimidine-1,8-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H29 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-04-02 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.495 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1J4F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 29SJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J4F N1 N1 N 0 1 N N N N N N 2.775 -14.073 -17.573 -0.817 0.752 0.733 N1 A1J4F 1 A1J4F N3 N2 N 0 1 N N N N N N 3.816 -13.534 -12.671 3.709 -0.687 -0.746 N3 A1J4F 2 A1J4F C4 C1 C 0 1 N N N N N N 2.625 -12.744 -12.976 2.667 -1.283 -1.596 C4 A1J4F 3 A1J4F C5 C2 C 0 1 N N N N N N 4.292 -13.394 -11.271 5.122 -1.008 -0.960 C5 A1J4F 4 A1J4F C6 C3 C 0 1 N N N N N N 4.115 -14.692 -10.514 5.893 0.273 -1.281 C6 A1J4F 5 A1J4F C7 C4 C 0 1 N N N N N N 5.689 -12.804 -11.247 5.697 -1.646 0.306 C7 A1J4F 6 A1J4F C8 C5 C 0 1 N N N N N N 4.449 -14.247 -13.661 3.335 0.166 0.239 C8 A1J4F 7 A1J4F C10 C6 C 0 1 N N N N N N 4.644 -14.591 -16.151 1.450 1.536 1.081 C10 A1J4F 8 A1J4F C13 C7 C 0 1 N N N N N N -0.056 -15.243 -18.183 -2.964 -0.891 1.396 C13 A1J4F 9 A1J4F C15 C8 C 0 1 N N N N N N -2.474 -15.779 -18.590 -3.713 -3.272 1.288 C15 A1J4F 10 A1J4F C17 C9 C 0 1 N N N N N N -1.760 -13.953 -17.013 -3.707 -1.869 -0.780 C17 A1J4F 11 A1J4F C20 C10 C 0 1 Y N N N N N -0.828 -16.128 -13.412 -2.874 2.038 -2.489 C20 A1J4F 12 A1J4F C21 C11 C 0 1 Y N N N N N 0.150 -17.098 -13.405 -3.367 3.034 -1.667 C21 A1J4F 13 A1J4F C22 C12 C 0 1 Y N N N N N 0.976 -17.237 -14.495 -3.649 2.760 -0.342 C22 A1J4F 14 A1J4F C1 C13 C 0 1 N N N N N N 4.070 -14.501 -17.410 -0.008 1.700 1.231 C1 A1J4F 15 A1J4F C11 C14 C 0 1 N N N N N N 0.635 -13.282 -16.758 -1.295 -1.333 -0.410 C11 A1J4F 16 A1J4F C12 C15 C 0 1 N N N N N N -0.321 -14.489 -16.865 -2.732 -0.895 -0.116 C12 A1J4F 17 A1J4F C14 C16 C 0 1 N N N N N N -1.072 -16.345 -18.489 -2.737 -2.298 1.951 C14 A1J4F 18 A1J4F C16 C17 C 0 1 N N N N N N -2.807 -15.029 -17.312 -3.480 -3.277 -0.224 C16 A1J4F 19 A1J4F C18 C18 C 0 1 Y N N N N N -0.164 -15.421 -15.637 -2.956 0.491 -0.663 C18 A1J4F 20 A1J4F C19 C19 C 0 1 Y N N N N N -0.983 -15.296 -14.514 -2.668 0.766 -1.987 C19 A1J4F 21 A1J4F C2 C20 C 0 1 N N N N N N 2.053 -13.715 -16.498 -0.336 -0.303 0.128 C2 A1J4F 22 A1J4F C23 C21 C 0 1 Y N N N N N 0.825 -16.411 -15.598 -3.438 1.490 0.161 C23 A1J4F 23 A1J4F C3 C22 C 0 1 N N N N N N 1.767 -13.390 -14.045 1.487 -1.701 -0.708 C3 A1J4F 24 A1J4F C9 C23 C 0 1 N N N N N N 3.895 -14.199 -15.039 1.895 0.418 0.441 C9 A1J4F 25 A1J4F N2 N3 N 0 1 N N N N N N 2.584 -13.774 -15.219 0.978 -0.500 -0.030 N2 A1J4F 26 A1J4F O1 O1 O 0 1 N N N N N N 4.672 -14.805 -18.442 -0.469 2.679 1.795 O1 A1J4F 27 A1J4F O2 O2 O 0 1 N N N N N N 5.527 -14.806 -13.460 4.166 0.709 0.941 O2 A1J4F 28 A1J4F O3 O3 O 0 1 N N N N N N 5.920 -15.006 -15.991 2.316 2.463 1.561 O3 A1J4F 29 A1J4F H3 H1 H 0 1 N N N N N N 2.940 -11.750 -13.327 2.332 -0.550 -2.330 H3 A1J4F 30 A1J4F H4 H2 H 0 1 N N N N N N 2.027 -12.637 -12.059 3.069 -2.156 -2.109 H4 A1J4F 31 A1J4F H5 H3 H 0 1 N N N N N N 3.635 -12.658 -10.785 5.214 -1.706 -1.793 H5 A1J4F 32 A1J4F H7 H4 H 0 1 N N N N N N 4.473 -14.567 -9.481 5.801 0.971 -0.449 H7 A1J4F 33 A1J4F H8 H5 H 0 1 N N N N N N 3.050 -14.967 -10.502 6.945 0.034 -1.440 H8 A1J4F 34 A1J4F H6 H6 H 0 1 N N N N N N 4.693 -15.486 -11.009 5.483 0.728 -2.183 H6 A1J4F 35 A1J4F H10 H7 H 0 1 N N N N N N 6.028 -12.706 -10.205 5.148 -2.560 0.535 H10 A1J4F 36 A1J4F H11 H8 H 0 1 N N N N N N 6.376 -13.465 -11.796 6.749 -1.885 0.147 H11 A1J4F 37 A1J4F H9 H9 H 0 1 N N N N N N 5.676 -11.812 -11.723 5.605 -0.949 1.138 H9 A1J4F 38 A1J4F H15 H10 H 0 1 N N N N N N -0.078 -14.515 -19.007 -2.269 -0.197 1.868 H15 A1J4F 39 A1J4F H16 H11 H 0 1 N N N N N N 0.942 -15.701 -18.124 -3.988 -0.578 1.605 H16 A1J4F 40 A1J4F H19 H12 H 0 1 N N N N N N -2.531 -15.090 -19.446 -3.551 -4.274 1.684 H19 A1J4F 41 A1J4F H20 H13 H 0 1 N N N N N N -3.192 -16.600 -18.732 -4.736 -2.960 1.497 H20 A1J4F 42 A1J4F H23 H14 H 0 1 N N N N N N -1.772 -13.223 -17.835 -4.731 -1.557 -0.571 H23 A1J4F 43 A1J4F H24 H15 H 0 1 N N N N N N -2.039 -13.453 -16.074 -3.542 -1.873 -1.857 H24 A1J4F 44 A1J4F H26 H16 H 0 1 N N N N N N -1.478 -16.014 -12.557 -2.653 2.252 -3.524 H26 A1J4F 45 A1J4F H27 H17 H 0 1 N N N N N N 0.267 -17.745 -12.548 -3.531 4.026 -2.060 H27 A1J4F 46 A1J4F H28 H18 H 0 1 N N N N N N 1.747 -17.994 -14.492 -4.033 3.539 0.300 H28 A1J4F 47 A1J4F H13 H19 H 0 1 N N N N N N 0.302 -12.636 -15.932 -1.104 -2.294 0.069 H13 A1J4F 48 A1J4F H14 H20 H 0 1 N N N N N N 0.602 -12.717 -17.701 -1.158 -1.430 -1.487 H14 A1J4F 49 A1J4F H17 H21 H 0 1 N N N N N N -0.807 -16.823 -19.444 -1.714 -2.610 1.742 H17 A1J4F 50 A1J4F H18 H22 H 0 1 N N N N N N -1.044 -17.094 -17.684 -2.903 -2.295 3.029 H18 A1J4F 51 A1J4F H21 H23 H 0 1 N N N N N N -3.791 -14.551 -17.423 -2.457 -3.589 -0.433 H21 A1J4F 52 A1J4F H22 H24 H 0 1 N N N N N N -2.838 -15.742 -16.475 -4.175 -3.970 -0.697 H22 A1J4F 53 A1J4F H25 H25 H 0 1 N N N N N N -1.752 -14.538 -14.501 -2.291 -0.014 -2.632 H25 A1J4F 54 A1J4F H29 H26 H 0 1 N N N N N N 1.484 -16.534 -16.445 -3.658 1.276 1.197 H29 A1J4F 55 A1J4F H1 H27 H 0 1 N N N N N N 0.992 -12.678 -14.363 0.700 -2.138 -1.323 H1 A1J4F 56 A1J4F H2 H28 H 0 1 N N N N N N 1.290 -14.289 -13.629 1.822 -2.428 0.032 H2 A1J4F 57 A1J4F H12 H29 H 0 1 N N N N N N 6.126 -15.048 -15.065 1.887 3.214 1.995 H12 A1J4F 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1J4F O1 C1 DOUB N N 1 A1J4F C1 N1 SING N N 2 A1J4F N1 C2 DOUB N N 3 A1J4F C2 N2 SING N N 4 A1J4F N2 C3 SING N N 5 A1J4F C3 C4 SING N N 6 A1J4F C4 N3 SING N N 7 A1J4F N3 C5 SING N N 8 A1J4F C5 C6 SING N N 9 A1J4F C5 C7 SING N N 10 A1J4F N3 C8 SING N N 11 A1J4F C8 O2 DOUB N N 12 A1J4F C8 C9 SING N N 13 A1J4F C9 C10 DOUB N N 14 A1J4F C10 O3 SING N N 15 A1J4F C2 C11 SING N N 16 A1J4F C11 C12 SING N N 17 A1J4F C12 C13 SING N N 18 A1J4F C13 C14 SING N N 19 A1J4F C14 C15 SING N N 20 A1J4F C15 C16 SING N N 21 A1J4F C16 C17 SING N N 22 A1J4F C12 C18 SING N N 23 A1J4F C18 C19 DOUB Y N 24 A1J4F C19 C20 SING Y N 25 A1J4F C20 C21 DOUB Y N 26 A1J4F C21 C22 SING Y N 27 A1J4F C22 C23 DOUB Y N 28 A1J4F C1 C10 SING N N 29 A1J4F C12 C17 SING N N 30 A1J4F C18 C23 SING Y N 31 A1J4F N2 C9 SING N N 32 A1J4F C4 H3 SING N N 33 A1J4F C4 H4 SING N N 34 A1J4F C5 H5 SING N N 35 A1J4F C6 H7 SING N N 36 A1J4F C6 H8 SING N N 37 A1J4F C6 H6 SING N N 38 A1J4F C7 H10 SING N N 39 A1J4F C7 H11 SING N N 40 A1J4F C7 H9 SING N N 41 A1J4F C13 H15 SING N N 42 A1J4F C13 H16 SING N N 43 A1J4F C15 H19 SING N N 44 A1J4F C15 H20 SING N N 45 A1J4F C17 H23 SING N N 46 A1J4F C17 H24 SING N N 47 A1J4F C20 H26 SING N N 48 A1J4F C21 H27 SING N N 49 A1J4F C22 H28 SING N N 50 A1J4F C11 H13 SING N N 51 A1J4F C11 H14 SING N N 52 A1J4F C14 H17 SING N N 53 A1J4F C14 H18 SING N N 54 A1J4F C16 H21 SING N N 55 A1J4F C16 H22 SING N N 56 A1J4F C19 H25 SING N N 57 A1J4F C23 H29 SING N N 58 A1J4F C3 H1 SING N N 59 A1J4F C3 H2 SING N N 60 A1J4F O3 H12 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J4F InChI InChI 1.06 "InChI=1S/C23H29N3O3/c1-16(2)25-13-14-26-18(24-21(28)20(27)19(26)22(25)29)15-23(11-7-4-8-12-23)17-9-5-3-6-10-17/h3,5-6,9-10,16,27H,4,7-8,11-15H2,1-2H3" A1J4F InChIKey InChI 1.06 BGNAIYDPAWYRHH-UHFFFAOYSA-N A1J4F SMILES_CANONICAL CACTVS 3.385 "CC(C)N1CCN2C(=NC(=O)C(=C2C1=O)O)CC3(CCCCC3)c4ccccc4" A1J4F SMILES CACTVS 3.385 "CC(C)N1CCN2C(=NC(=O)C(=C2C1=O)O)CC3(CCCCC3)c4ccccc4" A1J4F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)N1CCN2C(=NC(=O)C(=C2C1=O)O)CC3(CCCCC3)c4ccccc4" A1J4F SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)N1CCN2C(=NC(=O)C(=C2C1=O)O)CC3(CCCCC3)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id A1J4F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-oxidanyl-6-[(1-phenylcyclohexyl)methyl]-2-propan-2-yl-3,4-dihydropyrazino[1,2-c]pyrimidine-1,8-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J4F "Create component" 2026-04-02 PDBE A1J4F "Initial release" 2026-04-15 RCSB #