data_A1J62 # _chem_comp.id A1J62 _chem_comp.name "Trinuclear vanadium-lactate complex" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H8 O13 V3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date 2026-05-11 _chem_comp.pdbx_modified_date 2026-09-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.944 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1J62 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details MetalCoord _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 30JX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type "metal-containing ligand" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J62 V2 V1 V ? 1 N N N N N N 7.113 -16.755 -19.392 7.117 -16.542 -19.025 V2 A1J62 1 A1J62 O3 O1 O -2 1 N N N N N N 7.750 -18.103 -18.062 7.863 -17.759 -17.663 O3 A1J62 2 A1J62 O1 O2 O -1 1 N N N N N N 5.246 -16.467 -18.363 5.440 -16.685 -17.901 O1 A1J62 3 A1J62 O9 O3 O -2 1 N N N N N N 6.778 -15.004 -19.160 6.497 -14.796 -19.606 O9 A1J62 4 A1J62 O10 O4 O -2 1 N N N N N N 6.671 -17.485 -20.892 6.930 -17.538 -20.282 O10 A1J62 5 A1J62 V1 V2 V ? 1 N N N N N N 9.703 -17.526 -18.066 9.705 -17.475 -18.297 V1 A1J62 6 A1J62 C5 C1 C 0 1 N N R N N N 10.009 -15.549 -20.407 9.867 -15.459 -20.195 C5 A1J62 7 A1J62 C4 C2 C 0 1 N N N N N N 11.223 -16.481 -20.409 11.122 -16.298 -20.149 C4 A1J62 8 A1J62 O5 O5 O 0 1 N N N N N N 12.298 -15.846 -20.486 12.183 -15.766 -20.555 O5 A1J62 9 A1J62 C6 C3 C 0 1 N N N N N N 9.857 -14.644 -21.628 9.190 -15.512 -21.539 C6 A1J62 10 A1J62 O4 O6 O -1 1 N N N N N N 11.194 -17.667 -19.877 11.018 -17.464 -19.702 O4 A1J62 11 A1J62 O6 O7 O -1 1 N N N N N N 8.839 -15.873 -19.707 9.019 -15.845 -19.115 O6 A1J62 12 A1J62 O8 O8 O -2 1 N N N N N N 9.916 -19.308 -17.920 9.921 -19.392 -18.239 O8 A1J62 13 A1J62 O7 O9 O -2 1 N N N N N N 9.894 -16.501 -16.727 10.502 -16.954 -16.998 O7 A1J62 14 A1J62 V3 V3 V ? 1 N N N N N N 6.425 -17.953 -16.822 6.081 -18.288 -17.010 V3 A1J62 15 A1J62 O11 O10 O -2 1 N N N N N N 6.850 -16.868 -15.445 6.093 -17.890 -15.450 O11 A1J62 16 A1J62 O12 O11 O -2 1 N N N N N N 6.432 -19.645 -16.770 6.715 -20.111 -17.033 O12 A1J62 17 A1J62 O13 O12 O -1 1 N N N N N N 4.350 -18.662 -16.786 4.315 -18.995 -17.310 O13 A1J62 18 A1J62 C1 C4 C 0 1 N N N N N N 3.286 -17.951 -17.089 3.521 -18.045 -17.507 C1 A1J62 19 A1J62 C2 C5 C 0 1 N N S N N N 4.020 -17.077 -18.085 4.060 -16.833 -18.229 C2 A1J62 20 A1J62 C3 C6 C 0 1 N N N N N N 3.645 -17.097 -19.570 3.800 -16.884 -19.711 C3 A1J62 21 A1J62 O2 O13 O 0 1 N N N N N N 2.221 -18.509 -17.424 2.320 -18.013 -17.149 O2 A1J62 22 A1J62 H1 H1 H 0 1 N N N N N N 10.406 -14.793 -19.713 10.120 -14.526 -20.012 H1 A1J62 23 A1J62 H2 H2 H 0 1 N N N N N N 10.844 -14.470 -22.081 9.808 -15.209 -22.227 H2 A1J62 24 A1J62 H3 H3 H 0 1 N N N N N N 9.197 -15.128 -22.363 8.406 -14.935 -21.532 H3 A1J62 25 A1J62 H4 H4 H 0 1 N N N N N N 9.421 -13.683 -21.320 8.917 -16.426 -21.730 H4 A1J62 26 A1J62 H5 H5 H 0 1 N N N N N N 3.475 -16.152 -17.845 3.612 -16.038 -17.862 H5 A1J62 27 A1J62 H6 H6 H 0 1 N N N N N N 4.291 -16.398 -20.121 4.165 -16.088 -20.133 H6 A1J62 28 A1J62 H7 H7 H 0 1 N N N N N N 3.781 -18.113 -19.969 2.841 -16.924 -19.871 H7 A1J62 29 A1J62 H8 H8 H 0 1 N N N N N N 2.594 -16.795 -19.687 4.224 -17.674 -20.088 H8 A1J62 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_metal_coordination_flag _chem_comp_bond.pdbx_metal_pi_flag A1J62 V2 O10 DOUB N N 1 Y N A1J62 V2 O9 DOUB N N 2 Y N A1J62 V2 O3 SING N N 3 Y N A1J62 V2 O1 SING N N 4 Y N A1J62 V2 O6 SING N N 5 Y N A1J62 V1 O8 DOUB N N 6 Y N A1J62 V1 O7 DOUB N N 7 Y N A1J62 V1 O3 SING N N 8 Y N A1J62 V1 O4 SING N N 9 Y N A1J62 V1 O6 SING N N 10 Y N A1J62 C6 C5 SING N N 11 N N A1J62 O6 C5 SING N N 12 N N A1J62 C5 C4 SING N N 13 N N A1J62 C4 O5 DOUB N N 14 N N A1J62 O4 C4 SING N N 15 N N A1J62 V3 O12 DOUB N N 16 Y N A1J62 V3 O11 DOUB N N 17 Y N A1J62 V3 O13 SING N N 18 Y N A1J62 V3 O3 SING N N 19 Y N A1J62 V3 O1 SING N N 20 Y N A1J62 O2 C1 DOUB N N 21 N N A1J62 O13 C1 SING N N 22 N N A1J62 C1 C2 SING N N 23 N N A1J62 C2 C3 SING N N 24 N N A1J62 O1 C2 SING N N 25 N N A1J62 C5 H1 SING N N 26 N N A1J62 C6 H2 SING N N 27 N N A1J62 C6 H3 SING N N 28 N N A1J62 C6 H4 SING N N 29 N N A1J62 C2 H5 SING N N 30 N N A1J62 C3 H6 SING N N 31 N N A1J62 C3 H7 SING N N 32 N N A1J62 C3 H8 SING N N 33 N N # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J62 InChI InChI 1.06 "InChI=1S/2C3H5O3.7O.3V/c2*1-2(4)3(5)6;;;;;;;;;;/h2*2H,1H3,(H,5,6);;;;;;;;;;/q;;;;;;;;;;2*+1/p-2/t2*2-;;;;;;;;;;/m10........../s1" A1J62 InChIKey InChI 1.06 YGPNZILZVFAEDM-AZTMKNMFSA-L A1J62 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[V](=O)(=O)O[C@@H](C)C(=O)O[V](=O)(=O)O[V](=O)(=O)OC1=O" A1J62 SMILES CACTVS 3.385 "C[CH]1O[V](=O)(=O)O[CH](C)C(=O)O[V](=O)(=O)O[V](=O)(=O)OC1=O" A1J62 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1C(=O)O[V]2(=O)(=O)O1[V]3(=O)(=O)O2[V]4(=O)(=O)O3[C@H](C(=O)O4)C" A1J62 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(=O)O[V]2(=O)(=O)O1[V]3(=O)(=O)O2[V]4(=O)(=O)O3C(C(=O)O4)C" # loop_ _pdbx_chem_comp_atom_coordination.geometry_id _pdbx_chem_comp_atom_coordination.comp_id _pdbx_chem_comp_atom_coordination.atom_id _pdbx_chem_comp_atom_coordination.number _pdbx_chem_comp_atom_coordination.geometry_calculated _pdbx_chem_comp_atom_coordination.geometry_generic _pdbx_chem_comp_atom_coordination.geometry_abbr _pdbx_chem_comp_atom_coordination.provenance 1 A1J62 V1 5 square-pyramid "square pyramidal" SQP MetalCoord 2 A1J62 V1 5 "trigonal prism with a vacancy" "trigonal prismatic with vacancy" TPV FindGeo 3 A1J62 V2 5 "trigonal bipyramid" "trigonal bipyramidal" TBP FindGeo 3 A1J62 V2 5 trigonal-bipyramid "trigonal bipyramidal" TBP MetalCoord # loop_ _pdbx_chem_comp_atom_coordination_sphere.id _pdbx_chem_comp_atom_coordination_sphere.geometry_id _pdbx_chem_comp_atom_coordination_sphere.comp_id _pdbx_chem_comp_atom_coordination_sphere.atom_id _pdbx_chem_comp_atom_coordination_sphere.descriptor _pdbx_chem_comp_atom_coordination_sphere.provenance 1 1 A1J62 V1 "@SQP{V,O,O,O,O,O}" MetalCoord 2 3 A1J62 V2 "@TBP{V,O,O,O,O,O}" MetalCoord # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J62 "Create component" 2026-05-11 PDBE A1J62 "Other modification" 2026-07-31 RCSB A1J62 "Initial release" 2026-09-30 RCSB #