data_A1J67 # _chem_comp.id A1J67 _chem_comp.name "5'-triphosphoguanylyl-(2'->5')-adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 N10 O20 P4" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms "[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-05-09 _chem_comp.pdbx_modified_date 2026-08-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 852.386 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1J67 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 30LN _chem_comp.pdbx_subcomponent_list "GTP A" _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J67 PG P3 P 0 1 N N N N N N 32.118 64.061 55.836 -10.381 -2.941 1.023 PG GTP 1 A1J67 O1G O9 O 0 1 N N N N N N 33.182 64.832 55.086 -11.434 -2.079 1.604 O1G GTP 2 A1J67 O2G O10 O 0 1 N N N N N N 30.744 64.691 55.729 -10.091 -4.177 2.014 O2G GTP 3 A1J67 O3G O11 O 0 1 N N N N N N 32.510 63.759 57.268 -10.873 -3.502 -0.404 O3G GTP 4 A1J67 O3B O8 O 0 1 N N N N N N 31.956 62.621 55.097 -9.033 -2.083 0.826 O3B GTP 5 A1J67 PB P2 P 0 1 N N N N N N 31.539 62.035 53.668 -8.725 -0.581 0.336 PB GTP 6 A1J67 O1B O6 O 0 1 N N N N N N 30.186 62.530 53.325 -9.662 0.355 0.996 O1B GTP 7 A1J67 O2B O7 O 0 1 N N N N N N 31.808 60.578 53.639 -8.909 -0.489 -1.261 O2B GTP 8 A1J67 O3A O5 O 0 1 N N N N N N 32.615 62.776 52.745 -7.212 -0.189 0.726 O3A GTP 9 A1J67 PA P1 P 0 1 N N N N N N 34.060 62.340 52.215 -6.429 1.206 0.900 PA GTP 10 A1J67 O1A O3 O 0 1 N N N N N N 34.000 60.932 51.768 -6.853 2.147 -0.160 O1A GTP 11 A1J67 O2A O4 O 0 1 N N N N N N 34.563 63.377 51.282 -6.768 1.836 2.343 O2A GTP 12 A1J67 O1 O2 O 0 1 N N N N N N 34.921 62.384 53.557 -4.843 0.949 0.787 "O5'" GTP 13 A1J67 C1 C2 C 0 1 N N N N N N 35.955 61.400 53.762 -3.881 2.005 0.796 "C5'" GTP 14 A1J67 C3 C1 C 0 1 N N R N N N 37.284 62.098 53.903 -2.475 1.415 0.672 "C4'" GTP 15 A1J67 O2 O1 O 0 1 N N N N N N 38.321 61.117 54.128 -2.273 0.869 -0.650 "O4'" GTP 16 A1J67 C7 C4 C 0 1 N N R N N N 37.727 62.920 52.693 -1.411 2.527 0.805 "C3'" GTP 17 A1J67 O3 O12 O 0 1 N N N N N N 38.378 64.118 53.104 -0.887 2.562 2.134 "O3'" GTP 18 A1J67 C9 C5 C 0 1 N N R N N N 38.699 61.999 51.962 -0.311 2.118 -0.200 "C2'" GTP 19 A1J67 OP3 O13 O 0 1 N N N N N N 39.777 62.645 51.250 0.925 1.887 0.478 "O2'" GTP 20 A1J67 C10 C20 C 0 1 N N R N N N 39.283 61.148 53.089 -0.841 0.807 -0.822 "C1'" GTP 21 A1J67 N4 N10 N 0 1 Y N N N N N 39.593 59.761 52.706 -0.501 0.743 -2.245 N9 GTP 22 A1J67 C11 C19 C 0 1 Y N N N N N 40.807 59.135 52.798 -1.298 1.128 -3.284 C8 GTP 23 A1J67 N5 N9 N 0 1 Y N N N N N 40.778 57.886 52.394 -0.678 0.933 -4.411 N7 GTP 24 A1J67 C12 C16 C 0 1 Y N N N N N 39.463 57.679 52.014 0.549 0.415 -4.165 C5 GTP 25 A1J67 C13 C18 C 0 1 N N N N N N 38.809 56.523 51.486 1.632 0.014 -4.982 C6 GTP 26 A1J67 O6 O20 O 0 1 N N N N N N 39.314 55.424 51.255 1.566 0.108 -6.196 O6 GTP 27 A1J67 N8 N8 N 0 1 N N N N N N 37.470 56.751 51.235 2.741 -0.474 -4.385 N1 GTP 28 A1J67 C14 C3 C 0 1 N N N N N N 36.818 57.935 51.454 2.804 -0.574 -3.027 C2 GTP 29 A1J67 N2 N1 N 0 1 N N N N N N 35.519 57.977 51.147 3.943 -1.074 -2.448 N2 GTP 30 A1J67 N10 N2 N 0 1 N N N N N N 37.412 59.021 51.946 1.806 -0.205 -2.256 N3 GTP 31 A1J67 C15 C10 C 0 1 Y N N N N N 38.720 58.825 52.200 0.678 0.294 -2.776 C4 GTP 32 A1J67 P P4 P 0 1 N N N N N N 40.195 62.251 49.716 2.276 2.696 0.138 P A 33 A1J67 OP1 O14 O 0 1 N N N N N N 40.859 63.403 49.068 2.577 2.569 -1.305 OP1 A 34 A1J67 OP2 O15 O 0 1 N N N N N N 40.873 60.933 49.695 2.078 4.250 0.510 OP2 A 35 A1J67 "O5'" O16 O 0 1 N N N N N N 38.747 62.103 49.063 3.495 2.089 0.997 "O5'" A 36 A1J67 "C5'" C6 C 0 1 N N N N N N 38.233 63.128 48.187 4.847 2.524 0.842 "C5'" A 37 A1J67 "C4'" C7 C 0 1 N N R N N N 36.903 62.691 47.623 5.746 1.747 1.806 "C4'" A 38 A1J67 "O4'" O17 O 0 1 N N N N N N 37.042 61.395 47.001 5.783 0.360 1.428 "O4'" A 39 A1J67 "C3'" C17 C 0 1 N N S N N N 35.769 62.548 48.634 7.189 2.282 1.724 "C3'" A 40 A1J67 "O3'" O19 O 0 1 N N N N N N 34.512 62.882 48.054 7.611 2.778 2.996 "O3'" A 41 A1J67 "C2'" C15 C 0 1 N N R N N N 35.840 61.068 49.021 8.030 1.047 1.317 "C2'" A 42 A1J67 "O2'" O18 O 0 1 N N N N N N 34.565 60.561 49.402 9.262 1.010 2.039 "O2'" A 43 A1J67 "C1'" C8 C 0 1 N N R N N N 36.308 60.416 47.716 7.107 -0.126 1.737 "C1'" A 44 A1J67 N9 N3 N 0 1 Y N N N N N 37.169 59.254 47.915 7.412 -1.326 0.954 N9 A 45 A1J67 C8 C9 C 0 1 Y N N N N N 38.464 59.254 48.360 6.838 -1.685 -0.229 C8 A 46 A1J67 N7 N4 N 0 1 Y N N N N N 38.995 58.060 48.461 7.344 -2.809 -0.647 N7 A 47 A1J67 C5 C11 C 0 1 Y N N N N N 37.977 57.213 48.053 8.273 -3.242 0.240 C5 A 48 A1J67 C6 C12 C 0 1 Y N N N N N 37.898 55.812 47.932 9.120 -4.359 0.316 C6 A 49 A1J67 N6 N5 N 0 1 N N N N N N 38.905 54.983 48.227 9.111 -5.324 -0.677 N6 A 50 A1J67 N1 N6 N 0 1 Y N N N N N 36.732 55.284 47.495 9.932 -4.469 1.363 N1 A 51 A1J67 C2 C13 C 0 1 Y N N N N N 35.721 56.108 47.203 9.947 -3.553 2.314 C2 A 52 A1J67 N3 N7 N 0 1 Y N N N N N 35.681 57.441 47.279 9.171 -2.490 2.285 N3 A 53 A1J67 C4 C14 C 0 1 Y N N N N N 36.843 57.935 47.713 8.331 -2.293 1.275 C4 A 54 A1J67 HOG2 H23 H 0 0 N N N N N N 30.796 65.477 55.197 -10.861 -4.738 2.178 HOG2 GTP 55 A1J67 HOG3 H24 H 0 0 N N N N N N 33.373 64.116 57.443 -10.231 -4.076 -0.844 HOG3 GTP 56 A1J67 HOB2 H22 H 0 0 N N N N N N 31.018 60.115 53.385 -8.324 -1.077 -1.758 HOB2 GTP 57 A1J67 HOA2 H21 H 0 0 N N N N N N 34.799 62.972 50.456 -6.516 1.272 3.087 HOA2 GTP 58 A1J67 H1 H2 H 0 1 N N N N N N 35.988 60.717 52.901 -4.069 2.676 -0.043 "H5'" GTP 59 A1J67 H3 H3 H 0 1 N N N N N N 35.742 60.827 54.677 -3.960 2.561 1.730 "H5''" GTP 60 A1J67 H4 H1 H 0 1 N N N N N N 37.230 62.771 54.771 -2.318 0.647 1.430 "H4'" GTP 61 A1J67 H5 H4 H 0 1 N N N N N N 36.861 63.135 52.050 -1.835 3.495 0.538 "H3'" GTP 62 A1J67 H6 H25 H 0 1 N N N N N N 38.645 64.613 52.338 -1.548 2.755 2.813 "HO3'" GTP 63 A1J67 H7 H5 H 0 1 N N N N N N 38.132 61.348 51.280 -0.189 2.884 -0.965 "H2'" GTP 64 A1J67 H9 H15 H 0 1 N N N N N N 40.202 61.634 53.447 -0.433 -0.056 -0.294 "H1'" GTP 65 A1J67 H10 H14 H 0 1 N N N N N N 41.699 59.620 53.166 -2.295 1.532 -3.184 H8 GTP 66 A1J67 HN1 H20 H 0 1 N N N N N N 36.935 55.992 50.864 3.496 -0.755 -4.925 HN1 GTP 67 A1J67 HN21 H16 H 0 0 N N N N N N 34.999 58.820 51.287 4.689 -1.350 -3.003 HN21 GTP 68 A1J67 HN22 H17 H 0 0 N N N N N N 35.066 57.166 50.777 4.003 -1.151 -1.483 HN22 GTP 69 A1J67 HOP2 H26 H 0 0 N N N N N N 41.701 61.010 49.236 1.877 4.409 1.442 HOP2 A 70 A1J67 "H5'" H6 H 0 1 N N N N N N 38.102 64.062 48.753 5.172 2.345 -0.183 "H5'" A 71 A1J67 "H5''" H7 H 0 0 N N N N N N 38.943 63.296 47.363 4.914 3.590 1.063 "H5''" A 72 A1J67 "H4'" H8 H 0 1 N N N N N N 36.593 63.424 46.864 5.370 1.843 2.824 "H4'" A 73 A1J67 "H3'" H13 H 0 1 N N N N N N 35.978 63.171 49.516 7.264 3.063 0.967 "H3'" A 74 A1J67 "HO3'" H28 H 0 0 N N N N N N 34.503 63.804 47.827 8.513 3.127 3.003 "HO3'" A 75 A1J67 "H2'" H12 H 0 1 N N N N N N 36.591 60.918 49.810 8.210 1.036 0.242 "H2'" A 76 A1J67 "HO2'" H27 H 0 0 N N N N N N 34.415 60.739 50.323 9.836 1.771 1.878 "HO2'" A 77 A1J67 "H1'" H9 H 0 1 N N N N N N 35.420 60.117 47.139 7.202 -0.330 2.803 "H1'" A 78 A1J67 H8 H10 H 0 1 N N N N N N 39.001 60.158 48.606 6.075 -1.120 -0.745 H8 A 79 A1J67 H61 H18 H 0 1 N N N N N N 38.618 54.039 48.067 8.515 -5.233 -1.436 H61 A 80 A1J67 H62 H19 H 0 1 N N N N N N 39.692 55.195 47.647 9.701 -6.091 -0.613 H62 A 81 A1J67 H2 H11 H 0 1 N N N N N N 34.814 55.632 46.859 10.622 -3.682 3.148 H2 A 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1J67 N2 C14 SING N N 1 A1J67 C14 N10 DOUB N N 2 A1J67 N10 C15 SING N N 3 A1J67 C15 C12 DOUB Y N 4 A1J67 C12 N5 SING Y N 5 A1J67 N5 C11 DOUB Y N 6 A1J67 C11 N4 SING Y N 7 A1J67 N4 C10 SING N N 8 A1J67 C10 O2 SING N N 9 A1J67 O2 C3 SING N N 10 A1J67 C3 C1 SING N N 11 A1J67 C1 O1 SING N N 12 A1J67 O1 PA SING N N 13 A1J67 PA O1A DOUB N N 14 A1J67 PA O2A SING N N 15 A1J67 PA O3A SING N N 16 A1J67 O3A PB SING N N 17 A1J67 PB O1B DOUB N N 18 A1J67 PB O2B SING N N 19 A1J67 PB O3B SING N N 20 A1J67 O3B PG SING N N 21 A1J67 PG O1G DOUB N N 22 A1J67 PG O2G SING N N 23 A1J67 PG O3G SING N N 24 A1J67 C3 C7 SING N N 25 A1J67 C7 O3 SING N N 26 A1J67 C7 C9 SING N N 27 A1J67 C9 OP3 SING N N 28 A1J67 OP3 P SING N N 29 A1J67 P OP1 DOUB N N 30 A1J67 P OP2 SING N N 31 A1J67 P "O5'" SING N N 32 A1J67 "O5'" "C5'" SING N N 33 A1J67 "C5'" "C4'" SING N N 34 A1J67 "C4'" "O4'" SING N N 35 A1J67 "O4'" "C1'" SING N N 36 A1J67 "C1'" N9 SING N N 37 A1J67 N9 C8 SING Y N 38 A1J67 C8 N7 DOUB Y N 39 A1J67 N7 C5 SING Y N 40 A1J67 C5 C6 SING Y N 41 A1J67 C6 N6 SING N N 42 A1J67 C6 N1 DOUB Y N 43 A1J67 N1 C2 SING Y N 44 A1J67 C2 N3 DOUB Y N 45 A1J67 N3 C4 SING Y N 46 A1J67 "C1'" "C2'" SING N N 47 A1J67 "C2'" "O2'" SING N N 48 A1J67 "C2'" "C3'" SING N N 49 A1J67 "C3'" "O3'" SING N N 50 A1J67 C12 C13 SING N N 51 A1J67 C13 O6 DOUB N N 52 A1J67 C13 N8 SING N N 53 A1J67 N8 C14 SING N N 54 A1J67 N4 C15 SING Y N 55 A1J67 C9 C10 SING N N 56 A1J67 "C3'" "C4'" SING N N 57 A1J67 C4 N9 SING Y N 58 A1J67 C4 C5 DOUB Y N 59 A1J67 C3 H4 SING N N 60 A1J67 C1 H1 SING N N 61 A1J67 C1 H3 SING N N 62 A1J67 C7 H5 SING N N 63 A1J67 C9 H7 SING N N 64 A1J67 "C5'" "H5'" SING N N 65 A1J67 "C5'" "H5''" SING N N 66 A1J67 "C4'" "H4'" SING N N 67 A1J67 "C1'" "H1'" SING N N 68 A1J67 C8 H8 SING N N 69 A1J67 C2 H2 SING N N 70 A1J67 "C2'" "H2'" SING N N 71 A1J67 "C3'" "H3'" SING N N 72 A1J67 C11 H10 SING N N 73 A1J67 C10 H9 SING N N 74 A1J67 N2 HN21 SING N N 75 A1J67 N2 HN22 SING N N 76 A1J67 N6 H61 SING N N 77 A1J67 N6 H62 SING N N 78 A1J67 N8 HN1 SING N N 79 A1J67 O2A HOA2 SING N N 80 A1J67 O2B HOB2 SING N N 81 A1J67 O2G HOG2 SING N N 82 A1J67 O3G HOG3 SING N N 83 A1J67 O3 H6 SING N N 84 A1J67 OP2 HOP2 SING N N 85 A1J67 "O2'" "HO2'" SING N N 86 A1J67 "O3'" "HO3'" SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J67 InChI InChI 1.06 "InChI=1S/C20H28N10O20P4/c21-14-8-15(24-3-23-14)29(4-25-8)18-12(33)10(31)6(46-18)1-44-52(38,39)48-13-11(32)7(2-45-53(40,41)50-54(42,43)49-51(35,36)37)47-19(13)30-5-26-9-16(30)27-20(22)28-17(9)34/h3-7,10-13,18-19,31-33H,1-2H2,(H,38,39)(H,40,41)(H,42,43)(H2,21,23,24)(H2,35,36,37)(H3,22,27,28,34)/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1" A1J67 InChIKey InChI 1.06 AAOPLQLDGHSOGE-INFSMZHSSA-N A1J67 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" A1J67 SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" A1J67 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4n5cnc6c5N=C(NC6=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)O)N" A1J67 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4n5cnc6c5N=C(NC6=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1J67 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{R},4~{R},5~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1J67 _pdbx_chem_comp_synonyms.name "[[(2R,3R,4R,5R)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J67 "Create component" 2026-05-09 PDBE A1J67 "Initial release" 2026-09-02 RCSB #