data_A1J8S # _chem_comp.id A1J8S _chem_comp.name "(2~{S})-2-azanyl-6-[[(~{E})-4-[2-[(azanylidene-$l^{4}-azanylidene)amino]ethanoylamino]but-2-enoyl]amino]hexanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H21 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-05-27 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 313.333 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1J8S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 30XL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1J8S N1 N1 N 0 1 N N N N N N 10.105 3.313 11.597 ? ? ? N1 A1J8S 1 A1J8S C4 C1 C 0 1 N N N N N N 10.912 2.996 13.951 ? ? ? C4 A1J8S 2 A1J8S C5 C2 C 0 1 N N N N N N 10.535 3.417 15.361 ? ? ? C5 A1J8S 3 A1J8S C6 C3 C 0 1 N N N N N N 10.726 2.292 16.377 ? ? ? C6 A1J8S 4 A1J8S C7 C4 C 0 1 N N N N N N 9.531 1.351 16.381 ? ? ? C7 A1J8S 5 A1J8S C13 C5 C 0 1 N N N N N N 7.042 3.190 18.633 ? ? ? C13 A1J8S 6 A1J8S C17 C6 C 0 1 N N N N N N 4.424 1.922 20.200 ? ? ? C17 A1J8S 7 A1J8S O9 O1 O 0 1 N N N N N N 8.756 5.633 13.518 ? ? ? O9 A1J8S 8 A1J8S C3 C7 C 0 1 N N N N N N 9.861 5.143 13.237 ? ? ? C3 A1J8S 9 A1J8S O10 O2 O 0 1 N N N N N N 10.931 5.769 13.172 ? ? ? O10 A1J8S 10 A1J8S C2 C8 C 0 1 N N S N N N 9.888 3.634 13.010 ? ? ? C2 A1J8S 11 A1J8S N8 N2 N 0 1 N N N N N N 8.359 1.954 17.039 ? ? ? N8 A1J8S 12 A1J8S C12 C9 C 0 1 N N N N N N 8.397 2.676 18.163 ? ? ? C12 A1J8S 13 A1J8S O16 O3 O 0 1 N N N N N N 9.418 2.942 18.783 ? ? ? O16 A1J8S 14 A1J8S C14 C10 C 0 1 N N N N N N 5.905 2.758 17.728 ? ? ? C14 A1J8S 15 A1J8S C11 C11 C 0 1 N N N N N N 4.540 3.222 18.154 ? ? ? C11 A1J8S 16 A1J8S N15 N3 N 0 1 N N N N N N 4.557 3.088 19.594 ? ? ? N15 A1J8S 17 A1J8S O19 O4 O 0 1 N N N N N N 4.236 0.906 19.568 ? ? ? O19 A1J8S 18 A1J8S C18 C12 C 0 1 N N N N N N 4.424 1.896 21.734 ? ? ? C18 A1J8S 19 A1J8S N20 N4 N 0 1 N N N N N N 4.852 3.180 22.267 ? ? ? N20 A1J8S 20 A1J8S N21 N5 N 0 1 N N N N N N 4.114 4.221 21.864 ? ? ? N21 A1J8S 21 A1J8S N22 N6 N 0 1 N N N N N N 3.398 5.287 21.477 ? ? ? N22 A1J8S 22 A1J8S H1 H1 H 0 1 N N N N N N 10.118 2.320 11.478 ? ? ? H1 A1J8S 23 A1J8S H2 H2 H 0 1 N N N N N N 9.366 3.704 11.049 ? ? ? H2 A1J8S 24 A1J8S H4 H4 H 0 1 N N N N N N 10.878 1.900 13.861 ? ? ? H4 A1J8S 25 A1J8S H5 H5 H 0 1 N N N N N N 11.924 3.352 13.707 ? ? ? H5 A1J8S 26 A1J8S H6 H6 H 0 1 N N N N N N 11.165 4.269 15.655 ? ? ? H6 A1J8S 27 A1J8S H7 H7 H 0 1 N N N N N N 9.478 3.723 15.367 ? ? ? H7 A1J8S 28 A1J8S H8 H8 H 0 1 N N N N N N 11.631 1.723 16.117 ? ? ? H8 A1J8S 29 A1J8S H9 H9 H 0 1 N N N N N N 10.843 2.729 17.380 ? ? ? H9 A1J8S 30 A1J8S H10 H10 H 0 1 N N N N N N 9.268 1.106 15.341 ? ? ? H10 A1J8S 31 A1J8S H11 H11 H 0 1 N N N N N N 9.805 0.430 16.917 ? ? ? H11 A1J8S 32 A1J8S H12 H12 H 0 1 N N N N N N 6.906 3.797 19.516 ? ? ? H12 A1J8S 33 A1J8S H14 H14 H 0 1 N N N N N N 8.853 6.565 13.677 ? ? ? H14 A1J8S 34 A1J8S H15 H15 H 0 1 N N N N N N 8.900 3.245 13.297 ? ? ? H15 A1J8S 35 A1J8S H16 H16 H 0 1 N N N N N N 7.466 1.812 16.612 ? ? ? H16 A1J8S 36 A1J8S H17 H17 H 0 1 N N N N N N 6.064 2.161 16.842 ? ? ? H17 A1J8S 37 A1J8S H19 H19 H 0 1 N N N N N N 4.374 4.269 17.861 ? ? ? H19 A1J8S 38 A1J8S H20 H20 H 0 1 N N N N N N 3.757 2.589 17.712 ? ? ? H20 A1J8S 39 A1J8S H21 H21 H 0 1 N N N N N N 4.674 3.909 20.152 ? ? ? H21 A1J8S 40 A1J8S H22 H22 H 0 1 N N N N N N 3.407 1.677 22.092 ? ? ? H22 A1J8S 41 A1J8S H23 H23 H 0 1 N N N N N N 5.113 1.112 22.082 ? ? ? H23 A1J8S 42 A1J8S H24 H24 H 0 1 N N N N N N 3.800 6.145 21.798 ? ? ? H24 A1J8S 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1J8S N1 C2 SING N N 1 A1J8S C2 C3 SING N N 2 A1J8S C2 C4 SING N N 3 A1J8S O10 C3 DOUB N N 4 A1J8S C3 O9 SING N N 5 A1J8S C4 C5 SING N N 6 A1J8S C5 C6 SING N N 7 A1J8S C6 C7 SING N N 8 A1J8S C7 N8 SING N N 9 A1J8S N8 C12 SING N N 10 A1J8S C14 C11 SING N N 11 A1J8S C14 C13 DOUB N E 12 A1J8S C11 N15 SING N N 13 A1J8S C12 C13 SING N N 14 A1J8S C12 O16 DOUB N N 15 A1J8S O19 C17 DOUB N N 16 A1J8S N15 C17 SING N N 17 A1J8S C17 C18 SING N N 18 A1J8S N22 N21 DOUB N N 19 A1J8S C18 N20 SING N N 20 A1J8S N21 N20 DOUB N N 21 A1J8S N1 H1 SING N N 22 A1J8S N1 H2 SING N N 23 A1J8S C4 H4 SING N N 24 A1J8S C4 H5 SING N N 25 A1J8S C5 H6 SING N N 26 A1J8S C5 H7 SING N N 27 A1J8S C6 H8 SING N N 28 A1J8S C6 H9 SING N N 29 A1J8S C7 H10 SING N N 30 A1J8S C7 H11 SING N N 31 A1J8S C13 H12 SING N N 32 A1J8S O9 H14 SING N N 33 A1J8S C2 H15 SING N N 34 A1J8S N8 H16 SING N N 35 A1J8S C14 H17 SING N N 36 A1J8S C11 H19 SING N N 37 A1J8S C11 H20 SING N N 38 A1J8S N15 H21 SING N N 39 A1J8S C18 H22 SING N N 40 A1J8S C18 H23 SING N N 41 A1J8S N22 H24 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1J8S InChI InChI 1.06 "InChI=1S/C12H21N6O4/c13-9(12(21)22)4-1-2-6-15-10(19)5-3-7-16-11(20)8-17-18-14/h3,5,9,14H,1-2,4,6-8,13H2,(H,15,19)(H,16,20)(H,21,22)/b5-3+/t9-/m0/s1" A1J8S InChIKey InChI 1.06 SZINXFVKOLTVNU-SGRBOOSSSA-N A1J8S SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCNC(=O)/C=C/CNC(=O)CN=[N]=N)C(O)=O" A1J8S SMILES CACTVS 3.385 "N[CH](CCCCNC(=O)C=CCNC(=O)CN=[N]=N)C(O)=O" A1J8S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCNC(=O)/C=C/CNC(=O)CN=[N]=N)C[C@@H](C(=O)O)N" A1J8S SMILES "OpenEye OEToolkits" 2.0.7 "C(CCNC(=O)C=CCNC(=O)CN=[N]=N)CC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id A1J8S _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[[(~{E})-4-[2-[(azanylidene-$l^{4}-azanylidene)amino]ethanoylamino]but-2-enoyl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1J8S "Create component" 2026-05-27 PDBE A1J8S "Initial release" 2026-08-26 RCSB #