data_A1JA1 # _chem_comp.id A1JA1 _chem_comp.name "~{N}-[[1-[[3-[[4-[1-(2-azanylethanoyl)piperidin-4-yl]piperidin-1-yl]methyl]-5-[3,5-bis(chloranyl)phenyl]phenyl]methyl]piperidin-4-yl]methyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H47 Cl2 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-14 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 628.675 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JA1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QWC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JA1 C10 C1 C 0 1 Y N N N N N 49.365 -33.229 -4.632 0.136 1.594 -0.151 C10 A1JA1 1 A1JA1 N12 N1 N 0 1 N N N N N N 50.475 -34.715 -6.202 -1.836 3.003 0.024 N12 A1JA1 2 A1JA1 C13 C2 C 0 1 N N N N N N 51.112 -34.897 -7.492 -2.337 2.323 1.225 C13 A1JA1 3 A1JA1 C15 C3 C 0 1 N N N N N N 49.096 -36.156 -8.280 -4.495 1.878 0.052 C15 A1JA1 4 A1JA1 C17 C4 C 0 1 N N N N N N 48.989 -36.848 -10.885 -6.622 1.432 -1.182 C17 A1JA1 5 A1JA1 C20 C5 C 0 1 N N N N N N 46.977 -35.327 -13.560 -9.304 -0.671 -0.262 C20 A1JA1 6 A1JA1 C21 C6 C 0 1 N N N N N N 46.095 -34.089 -13.710 -9.720 -1.505 0.923 C21 A1JA1 7 A1JA1 C24 C7 C 0 1 N N N N N N 46.527 -35.441 -10.974 -6.964 -1.063 0.343 C24 A1JA1 8 A1JA1 C26 C8 C 0 1 N N N N N N 48.457 -35.812 -7.011 -3.942 2.620 -1.168 C26 A1JA1 9 A1JA1 C28 C9 C 0 1 Y N N N N N 49.928 -33.471 -3.373 0.097 0.462 0.643 C28 A1JA1 10 A1JA1 C02 C10 C 0 1 Y N N N N N 44.479 -30.108 -2.820 4.983 4.413 -0.791 C02 A1JA1 11 A1JA1 C03 C11 C 0 1 Y N N N N N 43.609 -30.357 -3.855 6.129 3.969 -0.152 C03 A1JA1 12 A1JA1 C04 C12 C 0 1 Y N N N N N 43.975 -31.295 -4.787 6.089 2.837 0.643 C04 A1JA1 13 A1JA1 C06 C13 C 0 1 Y N N N N N 45.160 -31.983 -4.718 4.904 2.144 0.803 C06 A1JA1 14 A1JA1 C07 C14 C 0 1 Y N N N N N 46.007 -31.747 -3.657 3.749 2.586 0.162 C07 A1JA1 15 A1JA1 C08 C15 C 0 1 Y N N N N N 47.363 -32.410 -3.538 2.474 1.845 0.330 C08 A1JA1 16 A1JA1 C09 C16 C 0 1 Y N N N N N 48.087 -32.679 -4.693 1.319 2.288 -0.310 C09 A1JA1 17 A1JA1 C11 C17 C 0 1 N N N N N N 50.124 -33.529 -5.960 -1.113 2.068 -0.848 C11 A1JA1 18 A1JA1 C14 C18 C 0 1 N N N N N N 50.123 -35.187 -8.632 -3.335 1.237 0.819 C14 A1JA1 19 A1JA1 C16 C19 C 0 1 N N N N N N 48.337 -36.419 -9.620 -5.467 0.790 -0.409 C16 A1JA1 20 A1JA1 C18 C20 C 0 1 N N N N N N 47.988 -37.124 -11.999 -7.575 0.338 -1.672 C18 A1JA1 21 A1JA1 C25 C21 C 0 1 N N N N N N 47.571 -35.170 -9.874 -6.018 0.048 0.811 C25 A1JA1 22 A1JA1 C27 C22 C 0 1 N N N N N N 49.539 -35.758 -5.928 -2.926 3.666 -0.704 C27 A1JA1 23 A1JA1 C29 C23 C 0 1 Y N N N N N 49.216 -33.179 -2.201 1.240 0.019 1.281 C29 A1JA1 24 A1JA1 C30 C24 C 0 1 N N N N N N 49.842 -33.429 -0.802 1.190 -1.215 2.145 C30 A1JA1 25 A1JA1 C32 C25 C 0 1 N N N N N N 51.470 -31.827 -0.972 1.214 -3.635 2.070 C32 A1JA1 26 A1JA1 C33 C26 C 0 1 N N N N N N 52.191 -30.658 -0.274 1.391 -4.839 1.144 C33 A1JA1 27 A1JA1 C34 C27 C 0 1 N N N N N N 52.579 -31.014 1.092 2.822 -4.852 0.599 C34 A1JA1 28 A1JA1 C35 C28 C 0 1 N N N N N N 53.231 -29.805 1.765 2.988 -6.019 -0.376 C35 A1JA1 29 A1JA1 C37 C29 C 0 1 N N N N N N 54.452 -29.262 3.855 4.769 -7.063 -1.670 C37 A1JA1 30 A1JA1 C38 C30 C 0 1 N N N N N N 55.097 -29.791 5.125 6.208 -7.148 -2.111 C38 A1JA1 31 A1JA1 C40 C31 C 0 1 N N N N N N 51.435 -31.497 1.853 3.094 -3.533 -0.131 C40 A1JA1 32 A1JA1 C41 C32 C 0 1 N N N N N N 50.735 -32.664 1.114 2.867 -2.367 0.833 C41 A1JA1 33 A1JA1 C42 C33 C 0 1 Y N N N N N 47.928 -32.643 -2.291 2.429 0.705 1.129 C42 A1JA1 34 A1JA1 C43 C34 C 0 1 Y N N N N N 45.674 -30.796 -2.709 3.794 3.727 -0.637 C43 A1JA1 35 A1JA1 N19 N2 N 0 1 N N N N N N 47.147 -35.918 -12.255 -7.996 -0.473 -0.521 N19 A1JA1 36 A1JA1 N22 N3 N 0 1 N N N N N N 45.999 -33.683 -15.099 -11.186 -1.569 0.985 N22 A1JA1 37 A1JA1 N31 N4 N 0 1 N N N N N N 50.322 -32.355 -0.243 1.484 -2.398 1.326 N31 A1JA1 38 A1JA1 N36 N5 N 0 1 N N N N N N 53.867 -30.231 2.997 4.386 -6.103 -0.805 N36 A1JA1 39 A1JA1 O23 O1 O 0 1 N N N N N N 47.537 -35.817 -14.488 -10.146 -0.179 -0.983 O23 A1JA1 40 A1JA1 O39 O2 O 0 1 N N N N N N 54.438 -28.104 3.551 3.957 -7.857 -2.094 O39 A1JA1 41 A1JA1 CL01 CL1 CL 0 0 N N N N N N 44.034 -28.891 -1.622 5.040 5.838 -1.781 CL01 A1JA1 42 A1JA1 CL05 CL2 CL 0 0 N N N N N N 42.884 -31.580 -6.124 7.529 2.286 1.440 CL05 A1JA1 43 A1JA1 H132 H2 H 0 0 N N N N N N 51.813 -35.741 -7.417 -1.502 1.868 1.759 H132 A1JA1 44 A1JA1 H131 H3 H 0 0 N N N N N N 51.667 -33.980 -7.738 -2.831 3.047 1.873 H131 A1JA1 45 A1JA1 H151 H4 H 0 0 N N N N N N 49.636 -37.094 -8.087 -5.017 2.581 0.701 H151 A1JA1 46 A1JA1 H171 H5 H 0 0 N N N N N N 49.562 -37.767 -10.691 -7.161 2.118 -0.527 H171 A1JA1 47 A1JA1 H172 H6 H 0 0 N N N N N N 49.673 -36.052 -11.216 -6.227 1.981 -2.037 H172 A1JA1 48 A1JA1 H212 H7 H 0 0 N N N N N N 46.529 -33.265 -13.124 -9.316 -2.512 0.818 H212 A1JA1 49 A1JA1 H211 H8 H 0 0 N N N N N N 45.088 -34.317 -13.332 -9.336 -1.053 1.837 H211 A1JA1 50 A1JA1 H242 H9 H 0 0 N N N N N N 45.977 -34.510 -11.174 -6.402 -1.810 -0.217 H242 A1JA1 51 A1JA1 H241 H10 H 0 0 N N N N N N 45.827 -36.210 -10.614 -7.433 -1.531 1.208 H241 A1JA1 52 A1JA1 H262 H11 H 0 0 N N N N N N 47.966 -34.831 -7.095 -3.454 1.910 -1.836 H262 A1JA1 53 A1JA1 H261 H12 H 0 0 N N N N N N 47.709 -36.576 -6.752 -4.758 3.114 -1.694 H261 A1JA1 54 A1JA1 H281 H13 H 0 0 N N N N N N 50.922 -33.887 -3.304 -0.831 -0.077 0.765 H281 A1JA1 55 A1JA1 H031 H14 H 0 0 N N N N N N 42.669 -29.832 -3.932 7.056 4.508 -0.275 H031 A1JA1 56 A1JA1 H061 H15 H 0 0 N N N N N N 45.425 -32.698 -5.483 4.874 1.260 1.423 H061 A1JA1 57 A1JA1 H091 H16 H 0 0 N N N N N N 47.651 -32.457 -5.656 1.348 3.171 -0.931 H091 A1JA1 58 A1JA1 H111 H17 H 0 0 N N N N N N 51.037 -32.915 -5.957 -0.843 2.572 -1.776 H111 A1JA1 59 A1JA1 H112 H18 H 0 0 N N N N N N 49.471 -33.210 -6.785 -1.751 1.213 -1.072 H112 A1JA1 60 A1JA1 H141 H19 H 0 0 N N N N N N 50.688 -35.576 -9.492 -2.838 0.505 0.182 H141 A1JA1 61 A1JA1 H142 H20 H 0 0 N N N N N N 49.630 -34.245 -8.913 -3.718 0.743 1.712 H142 A1JA1 62 A1JA1 H161 H21 H 0 0 N N N N N N 47.591 -37.192 -9.384 -4.944 0.086 -1.057 H161 A1JA1 63 A1JA1 H181 H22 H 0 0 N N N N N N 47.339 -37.962 -11.704 -8.449 0.795 -2.136 H181 A1JA1 64 A1JA1 H182 H23 H 0 0 N N N N N N 48.532 -37.388 -12.918 -7.063 -0.294 -2.398 H182 A1JA1 65 A1JA1 H252 H24 H 0 0 N N N N N N 48.257 -34.376 -10.204 -6.562 0.746 1.446 H252 A1JA1 66 A1JA1 H251 H25 H 0 0 N N N N N N 47.062 -34.855 -8.951 -5.193 -0.390 1.373 H251 A1JA1 67 A1JA1 H272 H26 H 0 0 N N N N N N 49.065 -35.571 -4.953 -3.417 4.384 -0.047 H272 A1JA1 68 A1JA1 H271 H27 H 0 0 N N N N N N 50.070 -36.721 -5.899 -2.519 4.187 -1.571 H271 A1JA1 69 A1JA1 H302 H28 H 0 0 N N N N N N 49.065 -33.846 -0.144 1.929 -1.132 2.942 H302 A1JA1 70 A1JA1 H301 H29 H 0 0 N N N N N N 50.659 -34.158 -0.912 0.195 -1.313 2.581 H301 A1JA1 71 A1JA1 H321 H30 H 0 0 N N N N N N 51.121 -31.477 -1.955 0.192 -3.615 2.449 H321 A1JA1 72 A1JA1 H322 H31 H 0 0 N N N N N N 52.194 -32.644 -1.110 1.909 -3.714 2.907 H322 A1JA1 73 A1JA1 H331 H32 H 0 0 N N N N N N 53.094 -30.400 -0.847 1.206 -5.758 1.701 H331 A1JA1 74 A1JA1 H332 H33 H 0 0 N N N N N N 51.517 -29.790 -0.240 0.687 -4.767 0.315 H332 A1JA1 75 A1JA1 H341 H34 H 0 0 N N N N N N 53.331 -31.815 1.043 3.525 -4.964 1.424 H341 A1JA1 76 A1JA1 H352 H35 H 0 0 N N N N N N 53.986 -29.372 1.092 2.703 -6.949 0.118 H352 A1JA1 77 A1JA1 H351 H36 H 0 0 N N N N N N 52.463 -29.050 1.989 2.350 -5.860 -1.246 H351 A1JA1 78 A1JA1 H381 H37 H 0 0 N N N N N N 55.531 -28.954 5.692 6.784 -6.358 -1.629 H381 A1JA1 79 A1JA1 H383 H38 H 0 0 N N N N N N 54.337 -30.295 5.740 6.617 -8.119 -1.829 H383 A1JA1 80 A1JA1 H382 H39 H 0 0 N N N N N N 55.890 -30.507 4.863 6.264 -7.030 -3.193 H382 A1JA1 81 A1JA1 H402 H40 H 0 0 N N N N N N 51.779 -31.848 2.837 4.125 -3.519 -0.484 H402 A1JA1 82 A1JA1 H401 H41 H 0 0 N N N N N N 50.718 -30.674 1.988 2.417 -3.441 -0.980 H401 A1JA1 83 A1JA1 H411 H42 H 0 0 N N N N N N 49.841 -32.948 1.689 3.554 -2.452 1.675 H411 A1JA1 84 A1JA1 H412 H43 H 0 0 N N N N N N 51.432 -33.514 1.076 3.046 -1.426 0.313 H412 A1JA1 85 A1JA1 H421 H44 H 0 0 N N N N N N 47.374 -32.411 -1.393 3.322 0.357 1.628 H421 A1JA1 86 A1JA1 H431 H45 H 0 0 N N N N N N 46.344 -30.592 -1.887 2.900 4.076 -1.132 H431 A1JA1 87 A1JA1 H221 H46 H 0 0 N N N N N N 45.418 -32.872 -15.170 -11.570 -1.924 0.123 H221 A1JA1 88 A1JA1 H2 H47 H 0 1 N N N N N N 46.912 -33.470 -15.448 -11.490 -2.122 1.772 H2 A1JA1 89 A1JA1 H361 H50 H 0 0 N N N N N N 53.893 -31.200 3.241 5.036 -5.468 -0.466 H361 A1JA1 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JA1 N22 C21 SING N N 1 A1JA1 O23 C20 DOUB N N 2 A1JA1 C21 C20 SING N N 3 A1JA1 C20 N19 SING N N 4 A1JA1 N19 C18 SING N N 5 A1JA1 N19 C24 SING N N 6 A1JA1 C18 C17 SING N N 7 A1JA1 C24 C25 SING N N 8 A1JA1 C17 C16 SING N N 9 A1JA1 C25 C16 SING N N 10 A1JA1 C16 C15 SING N N 11 A1JA1 C14 C15 SING N N 12 A1JA1 C14 C13 SING N N 13 A1JA1 C15 C26 SING N N 14 A1JA1 C13 N12 SING N N 15 A1JA1 C26 C27 SING N N 16 A1JA1 N12 C11 SING N N 17 A1JA1 N12 C27 SING N N 18 A1JA1 CL05 C04 SING N N 19 A1JA1 C11 C10 SING N N 20 A1JA1 C04 C06 DOUB Y N 21 A1JA1 C04 C03 SING Y N 22 A1JA1 C06 C07 SING Y N 23 A1JA1 C09 C10 DOUB Y N 24 A1JA1 C09 C08 SING Y N 25 A1JA1 C10 C28 SING Y N 26 A1JA1 C03 C02 DOUB Y N 27 A1JA1 C07 C08 SING N N 28 A1JA1 C07 C43 DOUB Y N 29 A1JA1 C08 C42 DOUB Y N 30 A1JA1 C28 C29 DOUB Y N 31 A1JA1 C02 C43 SING Y N 32 A1JA1 C02 CL01 SING N N 33 A1JA1 C42 C29 SING Y N 34 A1JA1 C29 C30 SING N N 35 A1JA1 C32 C33 SING N N 36 A1JA1 C32 N31 SING N N 37 A1JA1 C30 N31 SING N N 38 A1JA1 C33 C34 SING N N 39 A1JA1 N31 C41 SING N N 40 A1JA1 C34 C35 SING N N 41 A1JA1 C34 C40 SING N N 42 A1JA1 C41 C40 SING N N 43 A1JA1 C35 N36 SING N N 44 A1JA1 N36 C37 SING N N 45 A1JA1 O39 C37 DOUB N N 46 A1JA1 C37 C38 SING N N 47 A1JA1 C13 H132 SING N N 48 A1JA1 C13 H131 SING N N 49 A1JA1 C15 H151 SING N N 50 A1JA1 C17 H171 SING N N 51 A1JA1 C17 H172 SING N N 52 A1JA1 C21 H212 SING N N 53 A1JA1 C21 H211 SING N N 54 A1JA1 C24 H242 SING N N 55 A1JA1 C24 H241 SING N N 56 A1JA1 C26 H262 SING N N 57 A1JA1 C26 H261 SING N N 58 A1JA1 C28 H281 SING N N 59 A1JA1 C03 H031 SING N N 60 A1JA1 C06 H061 SING N N 61 A1JA1 C09 H091 SING N N 62 A1JA1 C11 H111 SING N N 63 A1JA1 C11 H112 SING N N 64 A1JA1 C14 H141 SING N N 65 A1JA1 C14 H142 SING N N 66 A1JA1 C16 H161 SING N N 67 A1JA1 C18 H181 SING N N 68 A1JA1 C18 H182 SING N N 69 A1JA1 C25 H252 SING N N 70 A1JA1 C25 H251 SING N N 71 A1JA1 C27 H272 SING N N 72 A1JA1 C27 H271 SING N N 73 A1JA1 C30 H302 SING N N 74 A1JA1 C30 H301 SING N N 75 A1JA1 C32 H321 SING N N 76 A1JA1 C32 H322 SING N N 77 A1JA1 C33 H331 SING N N 78 A1JA1 C33 H332 SING N N 79 A1JA1 C34 H341 SING N N 80 A1JA1 C35 H352 SING N N 81 A1JA1 C35 H351 SING N N 82 A1JA1 C38 H381 SING N N 83 A1JA1 C38 H383 SING N N 84 A1JA1 C38 H382 SING N N 85 A1JA1 C40 H402 SING N N 86 A1JA1 C40 H401 SING N N 87 A1JA1 C41 H411 SING N N 88 A1JA1 C41 H412 SING N N 89 A1JA1 C42 H421 SING N N 90 A1JA1 C43 H431 SING N N 91 A1JA1 N22 H221 SING N N 92 A1JA1 N22 H2 SING N N 93 A1JA1 N36 H361 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JA1 InChI InChI 1.06 "InChI=1S/C34H47Cl2N5O2/c1-24(42)38-21-25-2-8-39(9-3-25)22-26-14-27(16-30(15-26)31-17-32(35)19-33(36)18-31)23-40-10-4-28(5-11-40)29-6-12-41(13-7-29)34(43)20-37/h14-19,25,28-29H,2-13,20-23,37H2,1H3,(H,38,42)" A1JA1 InChIKey InChI 1.06 OMGCBULJCZIGPC-UHFFFAOYSA-N A1JA1 SMILES_CANONICAL CACTVS 3.385 "CC(=O)NC[C@@H]1CCN(CC1)Cc2cc(CN3CC[C@H](CC3)C4CCN(CC4)C(=O)CN)cc(c2)c5cc(Cl)cc(Cl)c5" A1JA1 SMILES CACTVS 3.385 "CC(=O)NC[CH]1CCN(CC1)Cc2cc(CN3CC[CH](CC3)C4CCN(CC4)C(=O)CN)cc(c2)c5cc(Cl)cc(Cl)c5" A1JA1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCC1CCN(CC1)Cc2cc(cc(c2)c3cc(cc(c3)Cl)Cl)CN4CCC(CC4)C5CCN(CC5)C(=O)CN" A1JA1 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NCC1CCN(CC1)Cc2cc(cc(c2)c3cc(cc(c3)Cl)Cl)CN4CCC(CC4)C5CCN(CC5)C(=O)CN" # _pdbx_chem_comp_identifier.comp_id A1JA1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[1-[[3-[[4-[1-(2-azanylethanoyl)piperidin-4-yl]piperidin-1-yl]methyl]-5-[3,5-bis(chloranyl)phenyl]phenyl]methyl]piperidin-4-yl]methyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JA1 "Create component" 2025-04-14 PDBE A1JA1 "Initial release" 2025-12-24 RCSB #