data_A1JA2 # _chem_comp.id A1JA2 _chem_comp.name "1-[[3-[3,5-bis(chloranyl)phenyl]-5-[(4-pyridin-4-ylpiperazin-1-yl)methyl]phenyl]methyl]-4-pyridin-4-yl-piperazine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H34 Cl2 N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-14 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 573.559 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JA2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QWD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JA2 C4 C1 C 0 1 Y N N N N N 44.629 -30.131 -2.845 -2.406 5.120 -0.099 C4 A1JA2 1 A1JA2 C6 C2 C 0 1 Y N N N N N 45.839 -30.775 -2.691 -1.418 4.158 -0.190 C6 A1JA2 2 A1JA2 C7 C3 C 0 1 Y N N N N N 46.229 -31.752 -3.609 -1.766 2.811 -0.262 C7 A1JA2 3 A1JA2 C8 C4 C 0 1 Y N N N N N 45.373 -32.054 -4.669 -3.109 2.440 -0.241 C8 A1JA2 4 A1JA2 C10 C5 C 0 1 Y N N N N N 48.009 -32.686 -2.136 0.634 2.144 -0.382 C10 A1JA2 5 A1JA2 C15 C6 C 0 1 N N N N N N 52.183 -30.401 -0.526 5.903 1.340 0.166 C15 A1JA2 6 A1JA2 C17 C7 C 0 1 N N N N N N 51.634 -30.973 1.757 4.582 -0.613 0.714 C17 A1JA2 7 A1JA2 C20 C8 C 0 1 Y N N N N N 55.001 -30.648 0.088 7.046 -2.138 0.538 C20 A1JA2 8 A1JA2 C21 C9 C 0 1 Y N N N N N 56.310 -30.999 0.350 7.988 -2.909 -0.110 C21 A1JA2 9 A1JA2 C24 C10 C 0 1 Y N N N N N 54.445 -31.451 2.253 7.639 -0.329 -0.915 C24 A1JA2 10 A1JA2 C26 C11 C 0 1 Y N N N N N 49.517 -33.531 -4.316 -0.069 -0.534 -0.536 C26 A1JA2 11 A1JA2 C11 C12 C 0 1 Y N N N N N 49.235 -33.301 -1.922 1.613 1.175 -0.474 C11 A1JA2 12 A1JA2 C12 C13 C 0 1 N N N N N N 49.804 -33.411 -0.534 3.066 1.574 -0.490 C12 A1JA2 13 A1JA2 C14 C14 C 0 1 N N N N N N 51.593 -31.724 -1.012 4.915 2.222 0.933 C14 A1JA2 14 A1JA2 C18 C15 C 0 1 N N N N N N 51.057 -32.303 1.309 3.595 0.269 1.481 C18 A1JA2 15 A1JA2 C19 C16 C 0 1 Y N N N N N 54.032 -30.875 1.058 6.859 -0.816 0.134 C19 A1JA2 16 A1JA2 C2 C17 C 0 1 Y N N N N N 44.170 -31.387 -4.787 -4.089 3.409 -0.150 C2 A1JA2 17 A1JA2 C23 C18 C 0 1 Y N N N N N 55.779 -31.768 2.422 8.560 -1.166 -1.510 C23 A1JA2 18 A1JA2 C25 C19 C 0 1 Y N N N N N 49.974 -33.722 -3.019 1.263 -0.161 -0.550 C25 A1JA2 19 A1JA2 C27 C20 C 0 1 N N N N N N 50.429 -33.883 -5.470 -0.444 -1.991 -0.619 C27 A1JA2 20 A1JA2 C29 C21 C 0 1 N N N N N N 48.565 -35.087 -6.737 -1.635 -1.954 1.489 C29 A1JA2 21 A1JA2 C3 C22 C 0 1 Y N N N N N 43.774 -30.420 -3.887 -3.739 4.746 -0.073 C3 A1JA2 22 A1JA2 C30 C23 C 0 1 N N N N N N 47.725 -34.877 -7.998 -2.961 -2.327 0.824 C30 A1JA2 23 A1JA2 C32 C24 C 0 1 N N N N N N 49.388 -33.481 -9.104 -1.980 -4.391 0.025 C32 A1JA2 24 A1JA2 C33 C25 C 0 1 N N N N N N 49.557 -33.029 -7.660 -0.653 -4.017 0.691 C33 A1JA2 25 A1JA2 C34 C26 C 0 1 Y N N N N N 48.147 -35.125 -10.436 -4.317 -4.168 0.245 C34 A1JA2 26 A1JA2 C35 C27 C 0 1 Y N N N N N 48.759 -34.669 -11.596 -5.511 -3.714 0.804 C35 A1JA2 27 A1JA2 C36 C28 C 0 1 Y N N N N N 48.309 -35.127 -12.820 -6.707 -4.111 0.245 C36 A1JA2 28 A1JA2 C38 C29 C 0 1 Y N N N N N 46.724 -36.431 -11.844 -5.623 -5.356 -1.368 C38 A1JA2 29 A1JA2 C39 C30 C 0 1 Y N N N N N 47.102 -36.031 -10.577 -4.386 -5.006 -0.868 C39 A1JA2 30 A1JA2 C40 C31 C 0 1 Y N N N N N 48.284 -32.909 -4.504 -1.056 0.426 -0.433 C40 A1JA2 31 A1JA2 C9 C32 C 0 1 Y N N N N N 47.512 -32.476 -3.422 -0.709 1.774 -0.361 C9 A1JA2 32 A1JA2 N13 N1 N 0 1 N N N N N N 50.508 -32.155 -0.074 3.579 1.613 0.886 N13 A1JA2 33 A1JA2 N16 N2 N 0 1 N N N N N N 52.687 -30.539 0.837 5.919 -0.004 0.761 N16 A1JA2 34 A1JA2 N22 N3 N 0 1 Y N N N N N 56.716 -31.553 1.495 8.707 -2.411 -1.099 N22 A1JA2 35 A1JA2 N28 N4 N 0 1 N N N N N N 49.786 -34.227 -6.799 -0.525 -2.554 0.736 N28 A1JA2 36 A1JA2 N31 N5 N 0 1 N N N N N N 48.588 -34.707 -9.173 -3.089 -3.790 0.780 N31 A1JA2 37 A1JA2 N37 N6 N 0 1 Y N N N N N 47.306 -35.997 -12.964 -6.731 -4.910 -0.806 N37 A1JA2 38 A1JA2 CL1 CL1 CL 0 0 N N N N N N 43.133 -31.752 -6.136 -5.763 2.949 -0.123 CL1 A1JA2 39 A1JA2 CL5 CL2 CL 0 0 N N N N N N 44.174 -28.905 -1.697 -1.975 6.799 -0.009 CL5 A1JA2 40 A1JA2 H6 H1 H 0 1 N N N N N N 46.484 -30.524 -1.862 -0.379 4.450 -0.207 H6 A1JA2 41 A1JA2 H8 H2 H 0 1 N N N N N N 45.650 -32.806 -5.393 -3.383 1.397 -0.297 H8 A1JA2 42 A1JA2 H10 H3 H 0 1 N N N N N N 47.426 -32.362 -1.286 0.909 3.187 -0.322 H10 A1JA2 43 A1JA2 H15A H4 H 0 0 N N N N N N 53.009 -30.107 -1.190 5.595 1.272 -0.878 H15A A1JA2 44 A1JA2 H15B H5 H 0 0 N N N N N N 51.402 -29.626 -0.547 6.900 1.775 0.224 H15B A1JA2 45 A1JA2 H17B H6 H 0 0 N N N N N N 52.057 -31.083 2.766 4.617 -1.602 1.171 H17B A1JA2 46 A1JA2 H17A H7 H 0 0 N N N N N N 50.834 -30.218 1.775 4.260 -0.704 -0.324 H17A A1JA2 47 A1JA2 H20 H8 H 0 1 N N N N N N 54.733 -30.203 -0.859 6.458 -2.553 1.343 H20 A1JA2 48 A1JA2 H21 H9 H 0 1 N N N N N N 57.049 -30.815 -0.416 8.140 -3.934 0.196 H21 A1JA2 49 A1JA2 H24 H10 H 0 1 N N N N N N 53.732 -31.648 3.040 7.524 0.689 -1.256 H24 A1JA2 50 A1JA2 H12B H11 H 0 0 N N N N N N 48.982 -33.626 0.164 3.636 0.847 -1.069 H12B A1JA2 51 A1JA2 H12A H12 H 0 0 N N N N N N 50.525 -34.241 -0.517 3.168 2.559 -0.944 H12A A1JA2 52 A1JA2 H14A H13 H 0 0 N N N N N N 51.176 -31.592 -2.021 5.238 2.312 1.970 H14A A1JA2 53 A1JA2 H14B H14 H 0 0 N N N N N N 52.382 -32.490 -1.039 4.880 3.211 0.475 H14B A1JA2 54 A1JA2 H18B H15 H 0 0 N N N N N N 50.252 -32.605 1.995 2.597 -0.166 1.423 H18B A1JA2 55 A1JA2 H18A H16 H 0 0 N N N N N N 51.848 -33.068 1.312 3.902 0.337 2.524 H18A A1JA2 56 A1JA2 H23 H17 H 0 1 N N N N N N 56.081 -32.215 3.357 9.168 -0.797 -2.323 H23 A1JA2 57 A1JA2 H25 H18 H 0 1 N N N N N N 50.925 -34.209 -2.860 2.032 -0.916 -0.621 H25 A1JA2 58 A1JA2 H27B H19 H 0 0 N N N N N N 51.029 -34.752 -5.161 -1.410 -2.090 -1.112 H27B A1JA2 59 A1JA2 H27A H20 H 0 0 N N N N N N 51.092 -33.021 -5.639 0.313 -2.528 -1.190 H27A A1JA2 60 A1JA2 H29A H21 H 0 0 N N N N N N 47.971 -34.816 -5.852 -1.525 -0.869 1.497 H29A A1JA2 61 A1JA2 H29B H22 H 0 0 N N N N N N 48.864 -36.143 -6.668 -1.623 -2.328 2.513 H29B A1JA2 62 A1JA2 H3 H23 H 0 1 N N N N N N 42.829 -29.908 -3.995 -4.508 5.501 -0.001 H3 A1JA2 63 A1JA2 H30A H24 H 0 0 N N N N N N 47.104 -33.978 -7.873 -3.787 -1.907 1.398 H30A A1JA2 64 A1JA2 H30B H25 H 0 0 N N N N N N 47.076 -35.752 -8.150 -2.984 -1.929 -0.191 H30B A1JA2 65 A1JA2 H32B H26 H 0 0 N N N N N N 50.379 -33.672 -9.541 -1.991 -4.016 -0.998 H32B A1JA2 66 A1JA2 H32A H27 H 0 0 N N N N N N 48.882 -32.687 -9.674 -2.090 -5.475 0.017 H32A A1JA2 67 A1JA2 H33B H28 H 0 0 N N N N N N 50.419 -32.350 -7.585 -0.630 -4.415 1.706 H33B A1JA2 68 A1JA2 H33A H29 H 0 0 N N N N N N 48.648 -32.505 -7.329 0.173 -4.437 0.117 H33A A1JA2 69 A1JA2 H35 H30 H 0 1 N N N N N N 49.576 -33.965 -11.543 -5.499 -3.060 1.664 H35 A1JA2 70 A1JA2 H36 H31 H 0 1 N N N N N N 48.797 -34.760 -13.711 -7.637 -3.764 0.672 H36 A1JA2 71 A1JA2 H38 H32 H 0 1 N N N N N N 45.910 -37.136 -11.934 -5.686 -6.004 -2.229 H38 A1JA2 72 A1JA2 H39 H33 H 0 1 N N N N N N 46.592 -36.417 -9.707 -3.483 -5.374 -1.333 H39 A1JA2 73 A1JA2 H40 H34 H 0 1 N N N N N N 47.917 -32.758 -5.508 -2.096 0.134 -0.422 H40 A1JA2 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JA2 N37 C36 DOUB Y N 1 A1JA2 N37 C38 SING Y N 2 A1JA2 C36 C35 SING Y N 3 A1JA2 C38 C39 DOUB Y N 4 A1JA2 C35 C34 DOUB Y N 5 A1JA2 C39 C34 SING Y N 6 A1JA2 C34 N31 SING N N 7 A1JA2 N31 C32 SING N N 8 A1JA2 N31 C30 SING N N 9 A1JA2 C32 C33 SING N N 10 A1JA2 C30 C29 SING N N 11 A1JA2 C33 N28 SING N N 12 A1JA2 N28 C29 SING N N 13 A1JA2 N28 C27 SING N N 14 A1JA2 CL1 C2 SING N N 15 A1JA2 C27 C26 SING N N 16 A1JA2 C2 C8 DOUB Y N 17 A1JA2 C2 C3 SING Y N 18 A1JA2 C8 C7 SING Y N 19 A1JA2 C40 C26 DOUB Y N 20 A1JA2 C40 C9 SING Y N 21 A1JA2 C26 C25 SING Y N 22 A1JA2 C3 C4 DOUB Y N 23 A1JA2 C7 C9 SING N N 24 A1JA2 C7 C6 DOUB Y N 25 A1JA2 C9 C10 DOUB Y N 26 A1JA2 C25 C11 DOUB Y N 27 A1JA2 C4 C6 SING Y N 28 A1JA2 C4 CL5 SING N N 29 A1JA2 C10 C11 SING Y N 30 A1JA2 C11 C12 SING N N 31 A1JA2 C14 C15 SING N N 32 A1JA2 C14 N13 SING N N 33 A1JA2 C12 N13 SING N N 34 A1JA2 C15 N16 SING N N 35 A1JA2 N13 C18 SING N N 36 A1JA2 C20 C21 DOUB Y N 37 A1JA2 C20 C19 SING Y N 38 A1JA2 C21 N22 SING Y N 39 A1JA2 N16 C19 SING N N 40 A1JA2 N16 C17 SING N N 41 A1JA2 C19 C24 DOUB Y N 42 A1JA2 C18 C17 SING N N 43 A1JA2 N22 C23 DOUB Y N 44 A1JA2 C24 C23 SING Y N 45 A1JA2 C6 H6 SING N N 46 A1JA2 C8 H8 SING N N 47 A1JA2 C10 H10 SING N N 48 A1JA2 C15 H15A SING N N 49 A1JA2 C15 H15B SING N N 50 A1JA2 C17 H17B SING N N 51 A1JA2 C17 H17A SING N N 52 A1JA2 C20 H20 SING N N 53 A1JA2 C21 H21 SING N N 54 A1JA2 C24 H24 SING N N 55 A1JA2 C12 H12B SING N N 56 A1JA2 C12 H12A SING N N 57 A1JA2 C14 H14A SING N N 58 A1JA2 C14 H14B SING N N 59 A1JA2 C18 H18B SING N N 60 A1JA2 C18 H18A SING N N 61 A1JA2 C23 H23 SING N N 62 A1JA2 C25 H25 SING N N 63 A1JA2 C27 H27B SING N N 64 A1JA2 C27 H27A SING N N 65 A1JA2 C29 H29A SING N N 66 A1JA2 C29 H29B SING N N 67 A1JA2 C3 H3 SING N N 68 A1JA2 C30 H30A SING N N 69 A1JA2 C30 H30B SING N N 70 A1JA2 C32 H32B SING N N 71 A1JA2 C32 H32A SING N N 72 A1JA2 C33 H33B SING N N 73 A1JA2 C33 H33A SING N N 74 A1JA2 C35 H35 SING N N 75 A1JA2 C36 H36 SING N N 76 A1JA2 C38 H38 SING N N 77 A1JA2 C39 H39 SING N N 78 A1JA2 C40 H40 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JA2 InChI InChI 1.06 "InChI=1S/C32H34Cl2N6/c33-29-20-28(21-30(34)22-29)27-18-25(23-37-9-13-39(14-10-37)31-1-5-35-6-2-31)17-26(19-27)24-38-11-15-40(16-12-38)32-3-7-36-8-4-32/h1-8,17-22H,9-16,23-24H2" A1JA2 InChIKey InChI 1.06 IFPHOKXTHCEYJO-UHFFFAOYSA-N A1JA2 SMILES_CANONICAL CACTVS 3.385 "Clc1cc(Cl)cc(c1)c2cc(CN3CCN(CC3)c4ccncc4)cc(CN5CCN(CC5)c6ccncc6)c2" A1JA2 SMILES CACTVS 3.385 "Clc1cc(Cl)cc(c1)c2cc(CN3CCN(CC3)c4ccncc4)cc(CN5CCN(CC5)c6ccncc6)c2" A1JA2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnccc1N2CCN(CC2)Cc3cc(cc(c3)c4cc(cc(c4)Cl)Cl)CN5CCN(CC5)c6ccncc6" A1JA2 SMILES "OpenEye OEToolkits" 2.0.7 "c1cnccc1N2CCN(CC2)Cc3cc(cc(c3)c4cc(cc(c4)Cl)Cl)CN5CCN(CC5)c6ccncc6" # _pdbx_chem_comp_identifier.comp_id A1JA2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[[3-[3,5-bis(chloranyl)phenyl]-5-[(4-pyridin-4-ylpiperazin-1-yl)methyl]phenyl]methyl]-4-pyridin-4-yl-piperazine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JA2 "Create component" 2025-04-14 PDBE A1JA2 "Initial release" 2025-12-24 RCSB #