data_A1JA3 # _chem_comp.id A1JA3 _chem_comp.name "~{N}-[[1-[[3-[3,5-bis(chloranyl)phenyl]-5-[(4-pyridin-4-ylpiperazin-1-yl)methyl]phenyl]methyl]piperidin-4-yl]methyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H37 Cl2 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-14 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 566.564 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JA3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QWE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JA3 C4 C1 C 0 1 Y N N N N N 43.851 -31.150 -4.841 -1.564 4.095 -0.388 C4 A1JA3 1 A1JA3 C6 C2 C 0 1 Y N N N N N 45.029 -31.855 -4.710 -1.413 2.757 -0.082 C6 A1JA3 2 A1JA3 C7 C3 C 0 1 Y N N N N N 45.880 -31.579 -3.643 -0.258 2.319 0.564 C7 A1JA3 3 A1JA3 C8 C4 C 0 1 Y N N N N N 47.182 -32.270 -3.508 -0.090 0.882 0.894 C8 A1JA3 4 A1JA3 C10 C5 C 0 1 Y N N N N N 49.205 -33.184 -4.498 -0.928 -1.368 0.876 C10 A1JA3 5 A1JA3 N12 N1 N 0 1 N N N N N N 49.280 -33.609 -6.987 -2.956 -2.473 1.629 N12 A1JA3 6 A1JA3 C13 C6 C 0 1 N N N N N N 50.193 -33.777 -8.153 -3.693 -1.216 1.823 C13 A1JA3 7 A1JA3 C17 C7 C 0 1 Y N N N N N 46.836 -36.059 -10.663 -7.294 -2.744 -1.077 C17 A1JA3 8 A1JA3 C20 C8 C 0 1 Y N N N N N 47.850 -35.136 -12.990 -7.096 -0.416 -2.480 C20 A1JA3 9 A1JA3 C21 C9 C 0 1 Y N N N N N 48.262 -34.548 -11.811 -6.242 -0.620 -1.417 C21 A1JA3 10 A1JA3 C22 C10 C 0 1 N N N N N N 48.219 -35.464 -8.269 -4.743 -3.317 0.184 C22 A1JA3 11 A1JA3 C24 C11 C 0 1 Y N N N N N 49.690 -33.455 -3.225 0.223 -1.799 1.513 C24 A1JA3 12 A1JA3 C26 C12 C 0 1 N N N N N N 49.502 -33.400 -0.723 2.465 -1.371 2.539 C26 A1JA3 13 A1JA3 C28 C13 C 0 1 N N N N N N 51.387 -31.793 -0.966 4.612 -2.421 2.157 C28 A1JA3 14 A1JA3 C11 C14 C 0 1 N N N N N N 50.061 -33.450 -5.707 -2.004 -2.359 0.516 C11 A1JA3 15 A1JA3 C14 C15 C 0 1 N N N N N N 49.375 -33.639 -9.426 -4.555 -0.938 0.589 C14 A1JA3 16 A1JA3 C16 C16 C 0 1 Y N N N N N 47.750 -35.016 -10.607 -6.331 -1.811 -0.695 C16 A1JA3 17 A1JA3 C18 C17 C 0 1 Y N N N N N 46.486 -36.582 -11.890 -8.114 -2.461 -2.149 C18 A1JA3 18 A1JA3 C2 C18 C 0 1 Y N N N N N 44.331 -29.909 -2.891 0.577 4.570 0.587 C2 A1JA3 19 A1JA3 C23 C19 C 0 1 N N N N N N 48.313 -34.746 -6.921 -3.881 -3.595 1.418 C23 A1JA3 20 A1JA3 C25 C20 C 0 1 Y N N N N N 48.949 -33.144 -2.092 1.215 -0.894 1.846 C25 A1JA3 21 A1JA3 C29 C21 C 0 1 N N N N N N 52.082 -30.581 -0.348 5.570 -2.911 1.069 C29 A1JA3 22 A1JA3 C3 C22 C 0 1 Y N N N N N 43.477 -30.170 -3.943 -0.572 5.000 -0.055 C3 A1JA3 23 A1JA3 C30 C23 C 0 1 N N N N N N 52.546 -30.910 1.064 6.060 -1.714 0.249 C30 A1JA3 24 A1JA3 C31 C24 C 0 1 N N N N N N 53.288 -29.747 1.697 6.970 -2.204 -0.878 C31 A1JA3 25 A1JA3 C33 C25 C 0 1 N N N N N N 54.410 -29.198 3.800 8.370 -1.243 -2.626 C33 A1JA3 26 A1JA3 C34 C26 C 0 1 N N N N N N 54.995 -29.727 5.077 8.948 -0.057 -3.355 C34 A1JA3 27 A1JA3 C36 C27 C 0 1 N N N N N N 51.340 -31.316 1.897 4.852 -0.987 -0.348 C36 A1JA3 28 A1JA3 C37 C28 C 0 1 N N N N N N 50.662 -32.523 1.266 3.914 -0.553 0.781 C37 A1JA3 29 A1JA3 C38 C29 C 0 1 Y N N N N N 47.700 -32.557 -2.247 1.064 0.443 1.540 C38 A1JA3 30 A1JA3 C39 C30 C 0 1 Y N N N N N 45.516 -30.593 -2.726 0.738 3.234 0.897 C39 A1JA3 31 A1JA3 C9 C31 C 0 1 Y N N N N N 47.952 -32.596 -4.625 -1.089 -0.033 0.566 C9 A1JA3 32 A1JA3 N15 N2 N 0 1 N N N N N N 48.197 -34.510 -9.382 -5.480 -2.061 0.377 N15 A1JA3 33 A1JA3 N19 N3 N 0 1 Y N N N N N 46.974 -36.141 -13.051 -7.995 -1.324 -2.810 N19 A1JA3 34 A1JA3 N27 N4 N 0 1 N N N N N N 50.219 -32.212 -0.128 3.474 -1.734 1.535 N27 A1JA3 35 A1JA3 N32 N5 N 0 1 N N N N N N 53.884 -30.102 2.976 7.532 -1.052 -1.587 N32 A1JA3 36 A1JA3 O35 O1 O 0 1 N N N N N N 54.407 -28.001 3.533 8.658 -2.368 -2.974 O35 A1JA3 37 A1JA3 CL1 CL1 CL 0 0 N N N N N N 43.917 -28.656 -1.752 1.817 5.712 1.001 CL1 A1JA3 38 A1JA3 CL5 CL2 CL 0 0 N N N N N N 42.809 -31.502 -6.189 -2.999 4.642 -1.199 CL5 A1JA3 39 A1JA3 H6 H1 H 0 1 N N N N N N 45.290 -32.616 -5.430 -2.188 2.051 -0.343 H6 A1JA3 40 A1JA3 H13A H3 H 0 0 N N N N N N 50.661 -34.772 -8.118 -4.333 -1.301 2.701 H13A A1JA3 41 A1JA3 H13B H4 H 0 0 N N N N N N 50.974 -33.003 -8.128 -2.987 -0.399 1.965 H13B A1JA3 42 A1JA3 H17 H5 H 0 1 N N N N N N 46.404 -36.456 -9.756 -7.394 -3.678 -0.543 H17 A1JA3 43 A1JA3 H20 H6 H 0 1 N N N N N N 48.260 -34.761 -13.916 -7.034 0.503 -3.044 H20 A1JA3 44 A1JA3 H21 H7 H 0 1 N N N N N N 48.973 -33.735 -11.824 -5.514 0.131 -1.147 H21 A1JA3 45 A1JA3 H22A H8 H 0 0 N N N N N N 47.296 -36.063 -8.292 -4.104 -3.232 -0.695 H22A A1JA3 46 A1JA3 H22B H9 H 0 0 N N N N N N 49.089 -36.127 -8.383 -5.450 -4.135 0.042 H22B A1JA3 47 A1JA3 H24 H10 H 0 1 N N N N N N 50.660 -33.916 -3.114 0.347 -2.845 1.750 H24 A1JA3 48 A1JA3 H26A H11 H 0 0 N N N N N N 48.670 -33.673 -0.057 2.854 -0.575 3.174 H26A A1JA3 49 A1JA3 H26B H12 H 0 0 N N N N N N 50.211 -34.238 -0.786 2.231 -2.243 3.151 H26B A1JA3 50 A1JA3 H28A H13 H 0 0 N N N N N N 51.034 -31.532 -1.975 4.251 -3.273 2.733 H28A A1JA3 51 A1JA3 H28B H14 H 0 0 N N N N N N 52.103 -32.626 -1.032 5.136 -1.732 2.819 H28B A1JA3 52 A1JA3 H11A H15 H 0 0 N N N N N N 50.630 -34.375 -5.532 -2.528 -2.019 -0.377 H11A A1JA3 53 A1JA3 H11B H16 H 0 0 N N N N N N 50.758 -32.608 -5.829 -1.553 -3.332 0.324 H11B A1JA3 54 A1JA3 H14B H17 H 0 0 N N N N N N 49.999 -33.918 -10.288 -5.124 -0.022 0.742 H14B A1JA3 55 A1JA3 H14A H18 H 0 0 N N N N N N 49.048 -32.594 -9.533 -3.914 -0.826 -0.285 H14A A1JA3 56 A1JA3 H18 H19 H 0 1 N N N N N N 45.776 -37.395 -11.913 -8.863 -3.178 -2.452 H18 A1JA3 57 A1JA3 H23B H20 H 0 0 N N N N N N 47.320 -34.358 -6.650 -3.312 -4.512 1.265 H23B A1JA3 58 A1JA3 H23A H21 H 0 0 N N N N N N 48.649 -35.461 -6.155 -4.523 -3.707 2.292 H23A A1JA3 59 A1JA3 H29A H22 H 0 0 N N N N N N 52.952 -30.307 -0.963 6.423 -3.408 1.532 H29A A1JA3 60 A1JA3 H29B H23 H 0 0 N N N N N N 51.378 -29.736 -0.312 5.051 -3.612 0.415 H29B A1JA3 61 A1JA3 H3 H24 H 0 1 N N N N N N 42.550 -29.628 -4.060 -0.693 6.046 -0.296 H3 A1JA3 62 A1JA3 H30 H25 H 0 1 N N N N N N 53.232 -31.768 1.010 6.614 -1.033 0.895 H30 A1JA3 63 A1JA3 H31B H26 H 0 0 N N N N N N 54.086 -29.422 1.013 7.779 -2.802 -0.458 H31B A1JA3 64 A1JA3 H31A H27 H 0 0 N N N N N N 52.580 -28.920 1.854 6.392 -2.812 -1.574 H31A A1JA3 65 A1JA3 H34A H28 H 0 0 N N N N N N 55.388 -28.891 5.675 9.526 0.551 -2.660 H34A A1JA3 66 A1JA3 H34C H29 H 0 0 N N N N N N 54.215 -30.251 5.648 9.597 -0.406 -4.159 H34C A1JA3 67 A1JA3 H34B H30 H 0 0 N N N N N N 55.811 -30.427 4.844 8.139 0.541 -3.776 H34B A1JA3 68 A1JA3 H36B H31 H 0 0 N N N N N N 51.669 -31.572 2.915 5.191 -0.108 -0.897 H36B A1JA3 69 A1JA3 H36A H32 H 0 0 N N N N N N 50.628 -30.479 1.941 4.321 -1.657 -1.024 H36A A1JA3 70 A1JA3 H37A H33 H 0 0 N N N N N N 49.786 -32.801 1.870 4.442 0.129 1.449 H37A A1JA3 71 A1JA3 H37B H34 H 0 0 N N N N N N 51.371 -33.363 1.240 3.046 -0.047 0.358 H37B A1JA3 72 A1JA3 H38 H35 H 0 1 N N N N N N 47.117 -32.318 -1.370 1.839 1.149 1.801 H38 A1JA3 73 A1JA3 H39 H36 H 0 1 N N N N N N 46.161 -30.366 -1.890 1.634 2.899 1.398 H39 A1JA3 74 A1JA3 H9 H37 H 0 1 N N N N N N 47.565 -32.387 -5.611 -1.987 0.302 0.069 H9 A1JA3 75 A1JA3 H32 H39 H 0 1 N N N N N N 53.899 -31.064 3.247 7.302 -0.151 -1.309 H32 A1JA3 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JA3 N19 C20 DOUB Y N 1 A1JA3 N19 C18 SING Y N 2 A1JA3 C20 C21 SING Y N 3 A1JA3 C18 C17 DOUB Y N 4 A1JA3 C21 C16 DOUB Y N 5 A1JA3 C17 C16 SING Y N 6 A1JA3 C16 N15 SING N N 7 A1JA3 C14 N15 SING N N 8 A1JA3 C14 C13 SING N N 9 A1JA3 N15 C22 SING N N 10 A1JA3 C22 C23 SING N N 11 A1JA3 C13 N12 SING N N 12 A1JA3 N12 C23 SING N N 13 A1JA3 N12 C11 SING N N 14 A1JA3 CL5 C4 SING N N 15 A1JA3 C11 C10 SING N N 16 A1JA3 C4 C6 DOUB Y N 17 A1JA3 C4 C3 SING Y N 18 A1JA3 C6 C7 SING Y N 19 A1JA3 C9 C10 DOUB Y N 20 A1JA3 C9 C8 SING Y N 21 A1JA3 C10 C24 SING Y N 22 A1JA3 C3 C2 DOUB Y N 23 A1JA3 C7 C8 SING N N 24 A1JA3 C7 C39 DOUB Y N 25 A1JA3 C8 C38 DOUB Y N 26 A1JA3 C24 C25 DOUB Y N 27 A1JA3 C2 C39 SING Y N 28 A1JA3 C2 CL1 SING N N 29 A1JA3 C38 C25 SING Y N 30 A1JA3 C25 C26 SING N N 31 A1JA3 C28 C29 SING N N 32 A1JA3 C28 N27 SING N N 33 A1JA3 C26 N27 SING N N 34 A1JA3 C29 C30 SING N N 35 A1JA3 N27 C37 SING N N 36 A1JA3 C30 C31 SING N N 37 A1JA3 C30 C36 SING N N 38 A1JA3 C37 C36 SING N N 39 A1JA3 C31 N32 SING N N 40 A1JA3 N32 C33 SING N N 41 A1JA3 O35 C33 DOUB N N 42 A1JA3 C33 C34 SING N N 43 A1JA3 C6 H6 SING N N 44 A1JA3 C13 H13A SING N N 45 A1JA3 C13 H13B SING N N 46 A1JA3 C17 H17 SING N N 47 A1JA3 C20 H20 SING N N 48 A1JA3 C21 H21 SING N N 49 A1JA3 C22 H22A SING N N 50 A1JA3 C22 H22B SING N N 51 A1JA3 C24 H24 SING N N 52 A1JA3 C26 H26A SING N N 53 A1JA3 C26 H26B SING N N 54 A1JA3 C28 H28A SING N N 55 A1JA3 C28 H28B SING N N 56 A1JA3 C11 H11A SING N N 57 A1JA3 C11 H11B SING N N 58 A1JA3 C14 H14B SING N N 59 A1JA3 C14 H14A SING N N 60 A1JA3 C18 H18 SING N N 61 A1JA3 C23 H23B SING N N 62 A1JA3 C23 H23A SING N N 63 A1JA3 C29 H29A SING N N 64 A1JA3 C29 H29B SING N N 65 A1JA3 C3 H3 SING N N 66 A1JA3 C30 H30 SING N N 67 A1JA3 C31 H31B SING N N 68 A1JA3 C31 H31A SING N N 69 A1JA3 C34 H34A SING N N 70 A1JA3 C34 H34C SING N N 71 A1JA3 C34 H34B SING N N 72 A1JA3 C36 H36B SING N N 73 A1JA3 C36 H36A SING N N 74 A1JA3 C37 H37A SING N N 75 A1JA3 C37 H37B SING N N 76 A1JA3 C38 H38 SING N N 77 A1JA3 C39 H39 SING N N 78 A1JA3 C9 H9 SING N N 79 A1JA3 N32 H32 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JA3 InChI InChI 1.06 "InChI=1S/C31H37Cl2N5O/c1-23(39)35-20-24-4-8-36(9-5-24)21-25-14-26(16-27(15-25)28-17-29(32)19-30(33)18-28)22-37-10-12-38(13-11-37)31-2-6-34-7-3-31/h2-3,6-7,14-19,24H,4-5,8-13,20-22H2,1H3,(H,35,39)" A1JA3 InChIKey InChI 1.06 SNVXMRYCRVZGRY-UHFFFAOYSA-N A1JA3 SMILES_CANONICAL CACTVS 3.385 "CC(=O)NCC1CCN(CC1)Cc2cc(CN3CCN(CC3)c4ccncc4)cc(c2)c5cc(Cl)cc(Cl)c5" A1JA3 SMILES CACTVS 3.385 "CC(=O)NCC1CCN(CC1)Cc2cc(CN3CCN(CC3)c4ccncc4)cc(c2)c5cc(Cl)cc(Cl)c5" A1JA3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCC1CCN(CC1)Cc2cc(cc(c2)c3cc(cc(c3)Cl)Cl)CN4CCN(CC4)c5ccncc5" A1JA3 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NCC1CCN(CC1)Cc2cc(cc(c2)c3cc(cc(c3)Cl)Cl)CN4CCN(CC4)c5ccncc5" # _pdbx_chem_comp_identifier.comp_id A1JA3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[1-[[3-[3,5-bis(chloranyl)phenyl]-5-[(4-pyridin-4-ylpiperazin-1-yl)methyl]phenyl]methyl]piperidin-4-yl]methyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JA3 "Create component" 2025-04-14 PDBE A1JA3 "Initial release" 2025-12-24 RCSB #