data_A1JA4 # _chem_comp.id A1JA4 _chem_comp.name "methyl 2-[1-[[3-[3,5-bis(chloranyl)phenyl]-5-[[4-(2-methoxy-2-oxidanylidene-ethyl)piperidin-1-yl]methyl]phenyl]methyl]piperidin-4-yl]ethanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H38 Cl2 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-14 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 561.540 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JA4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QWG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JA4 C4 C1 C 0 1 Y N N N N N 45.897 -31.727 -3.609 3.979 -0.373 0.145 C4 A1JA4 1 A1JA4 C5 C2 C 0 1 Y N N N N N 47.205 -32.408 -3.542 2.766 -0.041 0.933 C5 A1JA4 2 A1JA4 C6 C3 C 0 1 Y N N N N N 47.931 -32.701 -4.696 2.458 1.288 1.216 C6 A1JA4 3 A1JA4 C7 C4 C 0 1 Y N N N N N 49.196 -33.270 -4.633 1.328 1.591 1.949 C7 A1JA4 4 A1JA4 C8 C5 C 0 1 N N N N N N 50.001 -33.499 -5.884 0.993 3.028 2.255 C8 A1JA4 5 A1JA4 C10 C6 C 0 1 N N N N N N 48.216 -34.862 -7.006 -0.006 5.026 1.323 C10 A1JA4 6 A1JA4 C13 C7 C 0 1 N N N N N N 48.172 -38.516 -8.294 -2.889 5.406 -1.200 C13 A1JA4 7 A1JA4 C20 C8 C 0 1 Y N N N N N 49.738 -33.555 -3.386 0.503 0.578 2.403 C20 A1JA4 8 A1JA4 C21 C9 C 0 1 Y N N N N N 49.040 -33.278 -2.216 0.804 -0.743 2.126 C21 A1JA4 9 A1JA4 C22 C10 C 0 1 N N N N N N 49.655 -33.553 -0.872 -0.100 -1.842 2.624 C22 A1JA4 10 A1JA4 C24 C11 C 0 1 N N N N N N 50.671 -32.624 1.188 -0.538 -2.678 0.395 C24 A1JA4 11 A1JA4 C26 C12 C 0 1 N N N N N N 52.380 -30.783 1.082 -2.727 -3.741 -0.165 C26 A1JA4 12 A1JA4 C28 C13 C 0 1 N N N N N N 53.705 -29.727 3.006 -4.870 -4.839 -0.757 C28 A1JA4 13 A1JA4 C11 C14 C 0 1 N N N N N N 48.014 -36.008 -7.995 -0.770 5.576 0.116 C11 A1JA4 14 A1JA4 C12 C15 C 0 1 N N N N N N 48.437 -37.328 -7.353 -2.144 4.905 0.039 C12 A1JA4 15 A1JA4 C14 C16 C 0 1 N N N N N N 48.374 -39.889 -7.724 -4.286 4.841 -1.209 C14 A1JA4 16 A1JA4 C16 C17 C 0 1 N N N N N N 48.929 -42.116 -8.200 -6.457 4.567 -2.154 C16 A1JA4 17 A1JA4 C18 C18 C 0 1 N N N N N N 49.897 -37.230 -6.899 -1.959 3.388 -0.054 C18 A1JA4 18 A1JA4 C19 C19 C 0 1 N N N N N N 50.104 -36.026 -5.957 -1.160 2.901 1.157 C19 A1JA4 19 A1JA4 C2 C20 C 0 1 Y N N N N N 43.857 -31.234 -4.761 5.411 -2.006 -0.881 C2 A1JA4 20 A1JA4 C25 C21 C 0 1 N N N N N N 51.205 -31.364 1.858 -1.617 -2.820 -0.681 C25 A1JA4 21 A1JA4 C27 C22 C 0 1 N N N N N N 52.920 -29.507 1.744 -3.838 -3.838 -1.211 C27 A1JA4 22 A1JA4 C3 C23 C 0 1 Y N N N N N 45.024 -31.955 -4.673 4.280 -1.702 -0.147 C3 A1JA4 23 A1JA4 C30 C24 C 0 1 N N N N N N 54.706 -28.661 4.868 -6.896 -6.065 -1.021 C30 A1JA4 24 A1JA4 C32 C25 C 0 1 N N N N N N 51.931 -30.517 -0.354 -3.296 -3.163 1.134 C32 A1JA4 25 A1JA4 C33 C26 C 0 1 N N N N N N 51.382 -31.780 -1.010 -2.167 -3.011 2.157 C33 A1JA4 26 A1JA4 C34 C27 C 0 1 Y N N N N N 47.779 -32.710 -2.307 1.928 -1.058 1.388 C34 A1JA4 27 A1JA4 C35 C28 C 0 1 Y N N N N N 45.558 -30.771 -2.654 4.816 0.643 -0.310 C35 A1JA4 28 A1JA4 C36 C29 C 0 1 Y N N N N N 44.383 -30.067 -2.776 5.944 0.329 -1.043 C36 A1JA4 29 A1JA4 C38 C30 C 0 1 Y N N N N N 43.503 -30.279 -3.826 6.242 -0.993 -1.326 C38 A1JA4 30 A1JA4 N23 N1 N 0 1 N N N N N N 50.239 -32.329 -0.218 -1.132 -2.121 1.617 N23 A1JA4 31 A1JA4 N9 N2 N 0 1 N N N N N N 49.671 -34.766 -6.640 0.146 3.572 1.186 N9 A1JA4 32 A1JA4 O15 O1 O 0 1 N N N N N N 48.712 -40.768 -8.673 -5.127 5.148 -2.210 O15 A1JA4 33 A1JA4 O17 O2 O 0 1 N N N N N N 48.239 -40.182 -6.575 -4.648 4.112 -0.317 O17 A1JA4 34 A1JA4 O29 O3 O 0 1 N N N N N N 53.943 -28.574 3.632 -5.944 -5.090 -1.522 O29 A1JA4 35 A1JA4 O31 O4 O 0 1 N N N N N N 54.077 -30.796 3.414 -4.730 -5.415 0.296 O31 A1JA4 36 A1JA4 CL1 CL1 CL 0 0 N N N N N N 42.790 -31.525 -6.106 5.788 -3.660 -1.245 CL1 A1JA4 37 A1JA4 CL37 CL2 CL 0 0 N N N N N N 43.975 -28.891 -1.556 6.989 1.594 -1.610 CL37 A1JA4 38 A1JA4 H6 H1 H 0 1 N N N N N N 47.499 -32.480 -5.661 3.101 2.079 0.862 H6 A1JA4 39 A1JA4 H8B H2 H 0 1 N N N N N N 51.064 -33.538 -5.602 0.460 3.082 3.204 H8B A1JA4 40 A1JA4 H8A H3 H 0 1 N N N N N N 49.831 -32.647 -6.558 1.913 3.609 2.321 H8A A1JA4 41 A1JA4 H10B H4 H 0 0 N N N N N N 47.891 -33.918 -7.468 0.978 5.491 1.372 H10B A1JA4 42 A1JA4 H10A H5 H 0 0 N N N N N N 47.622 -35.051 -6.100 -0.559 5.248 2.235 H10A A1JA4 43 A1JA4 H13B H6 H 0 0 N N N N N N 48.845 -38.412 -9.158 -2.938 6.495 -1.179 H13B A1JA4 44 A1JA4 H13A H7 H 0 0 N N N N N N 47.127 -38.446 -8.632 -2.360 5.084 -2.097 H13A A1JA4 45 A1JA4 H20 H8 H 0 1 N N N N N N 50.720 -34.000 -3.324 -0.379 0.819 2.977 H20 A1JA4 46 A1JA4 H22A H9 H 0 0 N N N N N N 48.878 -33.964 -0.211 0.487 -2.743 2.802 H22A A1JA4 47 A1JA4 H22B H10 H 0 0 N N N N N N 50.457 -34.295 -1.001 -0.575 -1.528 3.553 H22B A1JA4 48 A1JA4 H24A H11 H 0 0 N N N N N N 49.810 -33.001 1.760 -0.111 -3.657 0.612 H24A A1JA4 49 A1JA4 H24B H12 H 0 0 N N N N N N 51.462 -33.388 1.171 0.247 -2.011 0.036 H24B A1JA4 50 A1JA4 H26 H13 H 0 1 N N N N N N 53.187 -31.530 1.061 -2.317 -4.733 0.025 H26 A1JA4 51 A1JA4 H11A H14 H 0 0 N N N N N N 48.623 -35.827 -8.893 -0.896 6.653 0.226 H11A A1JA4 52 A1JA4 H11B H15 H 0 0 N N N N N N 46.952 -36.063 -8.278 -0.211 5.366 -0.795 H11B A1JA4 53 A1JA4 H12 H16 H 0 1 N N N N N N 47.819 -37.474 -6.455 -2.719 5.148 0.933 H12 A1JA4 54 A1JA4 H16A H17 H 0 0 N N N N N N 49.201 -42.763 -9.047 -6.379 3.480 -2.159 H16A A1JA4 55 A1JA4 H16B H18 H 0 0 N N N N N N 49.743 -42.118 -7.461 -6.957 4.891 -1.241 H16B A1JA4 56 A1JA4 H16C H19 H 0 0 N N N N N N 48.008 -42.493 -7.732 -7.033 4.894 -3.019 H16C A1JA4 57 A1JA4 H18B H20 H 0 0 N N N N N N 50.171 -38.153 -6.368 -2.934 2.902 -0.067 H18B A1JA4 58 A1JA4 H18A H21 H 0 0 N N N N N N 50.541 -37.110 -7.783 -1.418 3.143 -0.969 H18A A1JA4 59 A1JA4 H19A H22 H 0 0 N N N N N N 49.507 -36.170 -5.044 -1.708 3.134 2.070 H19A A1JA4 60 A1JA4 H19B H23 H 0 0 N N N N N N 51.169 -35.950 -5.691 -1.014 1.824 1.086 H19B A1JA4 61 A1JA4 H25A H24 H 0 0 N N N N N N 51.536 -31.612 2.877 -2.035 -1.839 -0.908 H25A A1JA4 62 A1JA4 H25B H25 H 0 0 N N N N N N 50.401 -30.615 1.906 -1.179 -3.248 -1.582 H25B A1JA4 63 A1JA4 H27A H26 H 0 0 N N N N N N 53.574 -28.998 1.020 -4.308 -2.862 -1.334 H27A A1JA4 64 A1JA4 H27B H27 H 0 0 N N N N N N 52.064 -28.859 1.984 -3.415 -4.160 -2.163 H27B A1JA4 65 A1JA4 H3 H28 H 0 1 N N N N N N 45.264 -32.694 -5.423 3.632 -2.493 0.200 H3 A1JA4 66 A1JA4 H30B H29 H 0 0 N N N N N N 54.838 -27.654 5.290 -6.397 -7.026 -0.892 H30B A1JA4 67 A1JA4 H30A H30 H 0 0 N N N N N N 54.166 -29.292 5.589 -7.291 -5.729 -0.063 H30A A1JA4 68 A1JA4 H30C H31 H 0 0 N N N N N N 55.692 -29.103 4.660 -7.713 -6.174 -1.734 H30C A1JA4 69 A1JA4 H32B H32 H 0 0 N N N N N N 52.791 -30.156 -0.937 -3.740 -2.188 0.935 H32B A1JA4 70 A1JA4 H32A H33 H 0 0 N N N N N N 51.145 -29.747 -0.346 -4.057 -3.836 1.529 H32A A1JA4 71 A1JA4 H33A H34 H 0 0 N N N N N N 51.035 -31.539 -2.026 -2.566 -2.587 3.078 H33A A1JA4 72 A1JA4 H33B H35 H 0 0 N N N N N N 52.180 -32.535 -1.065 -1.732 -3.989 2.366 H33B A1JA4 73 A1JA4 H34 H36 H 0 1 N N N N N N 47.229 -32.497 -1.402 2.160 -2.089 1.168 H34 A1JA4 74 A1JA4 H35 H37 H 0 1 N N N N N N 46.217 -30.583 -1.819 4.584 1.674 -0.090 H35 A1JA4 75 A1JA4 H38 H38 H 0 1 N N N N N N 42.581 -29.723 -3.910 7.125 -1.235 -1.899 H38 A1JA4 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JA4 O15 C16 SING N N 1 A1JA4 O15 C14 SING N N 2 A1JA4 C13 C14 SING N N 3 A1JA4 C13 C12 SING N N 4 A1JA4 C11 C12 SING N N 5 A1JA4 C11 C10 SING N N 6 A1JA4 C14 O17 DOUB N N 7 A1JA4 C12 C18 SING N N 8 A1JA4 C10 N9 SING N N 9 A1JA4 C18 C19 SING N N 10 A1JA4 N9 C19 SING N N 11 A1JA4 N9 C8 SING N N 12 A1JA4 CL1 C2 SING N N 13 A1JA4 C8 C7 SING N N 14 A1JA4 C2 C3 DOUB Y N 15 A1JA4 C2 C38 SING Y N 16 A1JA4 C6 C7 DOUB Y N 17 A1JA4 C6 C5 SING Y N 18 A1JA4 C3 C4 SING Y N 19 A1JA4 C7 C20 SING Y N 20 A1JA4 C38 C36 DOUB Y N 21 A1JA4 C4 C5 SING N N 22 A1JA4 C4 C35 DOUB Y N 23 A1JA4 C5 C34 DOUB Y N 24 A1JA4 C20 C21 DOUB Y N 25 A1JA4 C36 C35 SING Y N 26 A1JA4 C36 CL37 SING N N 27 A1JA4 C34 C21 SING Y N 28 A1JA4 C21 C22 SING N N 29 A1JA4 C33 C32 SING N N 30 A1JA4 C33 N23 SING N N 31 A1JA4 C22 N23 SING N N 32 A1JA4 C32 C26 SING N N 33 A1JA4 N23 C24 SING N N 34 A1JA4 C26 C27 SING N N 35 A1JA4 C26 C25 SING N N 36 A1JA4 C24 C25 SING N N 37 A1JA4 C27 C28 SING N N 38 A1JA4 C28 O31 DOUB N N 39 A1JA4 C28 O29 SING N N 40 A1JA4 O29 C30 SING N N 41 A1JA4 C6 H6 SING N N 42 A1JA4 C8 H8B SING N N 43 A1JA4 C8 H8A SING N N 44 A1JA4 C10 H10B SING N N 45 A1JA4 C10 H10A SING N N 46 A1JA4 C13 H13B SING N N 47 A1JA4 C13 H13A SING N N 48 A1JA4 C20 H20 SING N N 49 A1JA4 C22 H22A SING N N 50 A1JA4 C22 H22B SING N N 51 A1JA4 C24 H24A SING N N 52 A1JA4 C24 H24B SING N N 53 A1JA4 C26 H26 SING N N 54 A1JA4 C11 H11A SING N N 55 A1JA4 C11 H11B SING N N 56 A1JA4 C12 H12 SING N N 57 A1JA4 C16 H16A SING N N 58 A1JA4 C16 H16B SING N N 59 A1JA4 C16 H16C SING N N 60 A1JA4 C18 H18B SING N N 61 A1JA4 C18 H18A SING N N 62 A1JA4 C19 H19A SING N N 63 A1JA4 C19 H19B SING N N 64 A1JA4 C25 H25A SING N N 65 A1JA4 C25 H25B SING N N 66 A1JA4 C27 H27A SING N N 67 A1JA4 C27 H27B SING N N 68 A1JA4 C3 H3 SING N N 69 A1JA4 C30 H30B SING N N 70 A1JA4 C30 H30A SING N N 71 A1JA4 C30 H30C SING N N 72 A1JA4 C32 H32B SING N N 73 A1JA4 C32 H32A SING N N 74 A1JA4 C33 H33A SING N N 75 A1JA4 C33 H33B SING N N 76 A1JA4 C34 H34 SING N N 77 A1JA4 C35 H35 SING N N 78 A1JA4 C38 H38 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JA4 InChI InChI 1.06 "InChI=1S/C30H38Cl2N2O4/c1-37-29(35)14-21-3-7-33(8-4-21)19-23-11-24(13-25(12-23)26-16-27(31)18-28(32)17-26)20-34-9-5-22(6-10-34)15-30(36)38-2/h11-13,16-18,21-22H,3-10,14-15,19-20H2,1-2H3" A1JA4 InChIKey InChI 1.06 NDWSEVGIFGROAW-UHFFFAOYSA-N A1JA4 SMILES_CANONICAL CACTVS 3.385 "COC(=O)C[C@@H]1CCN(CC1)Cc2cc(CN3CC[C@@H](CC3)CC(=O)OC)cc(c2)c4cc(Cl)cc(Cl)c4" A1JA4 SMILES CACTVS 3.385 "COC(=O)C[CH]1CCN(CC1)Cc2cc(CN3CC[CH](CC3)CC(=O)OC)cc(c2)c4cc(Cl)cc(Cl)c4" A1JA4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)CC1CCN(CC1)Cc2cc(cc(c2)c3cc(cc(c3)Cl)Cl)CN4CCC(CC4)CC(=O)OC" A1JA4 SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)CC1CCN(CC1)Cc2cc(cc(c2)c3cc(cc(c3)Cl)Cl)CN4CCC(CC4)CC(=O)OC" # _pdbx_chem_comp_identifier.comp_id A1JA4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 2-[1-[[3-[3,5-bis(chloranyl)phenyl]-5-[[4-(2-methoxy-2-oxidanylidene-ethyl)piperidin-1-yl]methyl]phenyl]methyl]piperidin-4-yl]ethanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JA4 "Create component" 2025-04-14 PDBE A1JA4 "Initial release" 2025-12-24 RCSB #