data_A1JA5 # _chem_comp.id A1JA5 _chem_comp.name "~{N}-[[1-[[3-[3,5-bis(chloranyl)phenyl]-5-[(4-piperidin-4-ylpiperidin-1-yl)methyl]phenyl]methyl]piperidin-4-yl]methyl]-2,2,2-tris(fluoranyl)ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H41 Cl2 F3 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-14 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 625.595 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JA5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QWF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JA5 C4 C1 C 0 1 Y N N N N N 43.942 -31.315 -4.822 0.444 4.609 0.972 C4 A1JA5 1 A1JA5 C6 C2 C 0 1 Y N N N N N 45.125 -32.016 -4.719 0.348 3.231 0.989 C6 A1JA5 2 A1JA5 C7 C3 C 0 1 Y N N N N N 45.994 -31.745 -3.666 -0.537 2.586 0.128 C7 A1JA5 3 A1JA5 C8 C4 C 0 1 Y N N N N N 47.312 -32.415 -3.566 -0.645 1.106 0.142 C8 A1JA5 4 A1JA5 C10 C5 C 0 1 Y N N N N N 49.362 -33.207 -4.604 -1.631 -0.915 -0.698 C10 A1JA5 5 A1JA5 N12 N1 N 0 1 N N N N N N 50.234 -34.735 -6.440 -3.891 -1.765 -0.966 N12 A1JA5 6 A1JA5 C13 C6 C 0 1 N N N N N N 50.878 -34.656 -7.798 -4.516 -0.457 -0.730 C13 A1JA5 7 A1JA5 C15 C7 C 0 1 N N N N N N 50.829 -37.126 -7.663 -6.757 -1.556 -0.679 C15 A1JA5 8 A1JA5 C22 C8 C 0 1 N N N N N N 50.792 -37.163 -6.133 -6.065 -2.894 -0.953 C22 A1JA5 9 A1JA5 C24 C9 C 0 1 Y N N N N N 49.877 -33.487 -3.348 -0.846 -1.655 0.169 C24 A1JA5 10 A1JA5 C26 C10 C 0 1 N N N N N N 49.715 -33.528 -0.841 0.887 -1.832 1.966 C26 A1JA5 11 A1JA5 C28 C11 C 0 1 N N N N N N 51.486 -31.786 -0.971 2.910 -3.156 2.096 C28 A1JA5 12 A1JA5 C11 C12 C 0 1 N N N N N N 50.223 -33.354 -5.834 -2.589 -1.614 -1.628 C11 A1JA5 13 A1JA5 C14 C13 C 0 1 N N N N N N 51.648 -35.924 -8.117 -5.797 -0.641 0.086 C14 A1JA5 14 A1JA5 C2 C14 C 0 1 Y N N N N N 44.448 -30.093 -2.873 -1.219 4.713 -0.755 C2 A1JA5 15 A1JA5 C23 C15 C 0 1 N N N N N N 50.938 -35.738 -5.581 -4.776 -2.644 -1.740 C23 A1JA5 16 A1JA5 C25 C16 C 0 1 Y N N N N N 49.138 -33.239 -2.197 0.035 -1.020 1.025 C25 A1JA5 17 A1JA5 C29 C17 C 0 1 N N N N N N 52.107 -30.586 -0.272 4.150 -3.595 1.314 C29 A1JA5 18 A1JA5 C3 C18 C 0 1 Y N N N N N 43.576 -30.348 -3.909 -0.338 5.349 0.102 C3 A1JA5 19 A1JA5 C30 C19 C 0 1 N N N N N N 52.595 -30.999 1.109 5.022 -2.371 1.021 C30 A1JA5 20 A1JA5 C31 C20 C 0 1 N N N N N N 53.314 -29.853 1.785 6.233 -2.793 0.188 C31 A1JA5 21 A1JA5 C33 C21 C 0 1 N N N N N N 54.519 -29.332 3.785 8.267 -1.784 -0.697 C33 A1JA5 22 A1JA5 C34 C22 C 0 1 N N N N N N 55.223 -29.849 5.039 9.187 -0.604 -0.881 C34 A1JA5 23 A1JA5 C39 C23 C 0 1 N N N N N N 51.410 -31.481 1.927 4.198 -1.341 0.242 C39 A1JA5 24 A1JA5 C40 C24 C 0 1 N N N N N N 50.772 -32.677 1.231 2.957 -0.968 1.055 C40 A1JA5 25 A1JA5 C41 C25 C 0 1 Y N N N N N 47.861 -32.708 -2.321 0.140 0.357 1.016 C41 A1JA5 26 A1JA5 C42 C26 C 0 1 Y N N N N N 45.638 -30.771 -2.735 -1.322 3.336 -0.746 C42 A1JA5 27 A1JA5 C9 C27 C 0 1 Y N N N N N 48.081 -32.679 -4.702 -1.535 0.461 -0.715 C9 A1JA5 28 A1JA5 F35 F1 F 0 1 N N N N N N 55.308 -31.153 5.102 10.294 -0.991 -1.643 F35 A1JA5 29 A1JA5 F36 F2 F 0 1 N N N N N N 54.588 -29.462 6.110 8.502 0.422 -1.540 F36 A1JA5 30 A1JA5 F37 F3 F 0 1 N N N N N N 56.432 -29.375 5.116 9.618 -0.150 0.370 F37 A1JA5 31 A1JA5 N27 N2 N 0 1 N N N N N N 50.341 -32.327 -0.168 2.155 -2.172 1.308 N27 A1JA5 32 A1JA5 N32 N3 N 0 1 N N N N N N 53.993 -30.240 3.011 7.128 -1.646 0.009 N32 A1JA5 33 A1JA5 O38 O1 O 0 1 N N N N N N 54.463 -28.131 3.587 8.552 -2.857 -1.186 O38 A1JA5 34 A1JA5 CL1 CL1 CL 0 0 N N N N N N 44.031 -28.881 -1.691 -2.196 5.648 -1.843 CL1 A1JA5 35 A1JA5 CL5 CL2 CL 0 0 N N N N N N 42.883 -31.656 -6.154 1.542 5.414 2.049 CL5 A1JA5 36 A1JA5 H6 H1 H 0 1 N N N N N N 45.376 -32.770 -5.450 0.959 2.654 1.668 H6 A1JA5 37 A1JA5 H13B H3 H 0 0 N N N N N N 51.571 -33.802 -7.817 -3.825 0.183 -0.182 H13B A1JA5 38 A1JA5 H13A H4 H 0 0 N N N N N N 50.096 -34.511 -8.558 -4.759 0.007 -1.687 H13A A1JA5 39 A1JA5 H1 H5 H 0 1 N N N N N N 50.260 -37.794 -8.326 -7.032 -1.088 -1.624 H1 A1JA5 40 A1JA5 H22A H7 H 0 0 N N N N N N 49.834 -37.588 -5.800 -5.825 -3.381 -0.008 H22A A1JA5 41 A1JA5 H22B H8 H 0 0 N N N N N N 51.619 -37.786 -5.762 -6.728 -3.534 -1.535 H22B A1JA5 42 A1JA5 H24 H9 H 0 1 N N N N N N 50.869 -33.905 -3.262 -0.921 -2.732 0.177 H24 A1JA5 43 A1JA5 H26A H10 H 0 0 N N N N N N 48.908 -33.904 -0.195 1.089 -1.252 2.866 H26A A1JA5 44 A1JA5 H26B H11 H 0 0 N N N N N N 50.487 -34.303 -0.952 0.360 -2.748 2.234 H26B A1JA5 45 A1JA5 H28A H12 H 0 0 N N N N N N 51.120 -31.478 -1.962 2.280 -4.023 2.293 H28A A1JA5 46 A1JA5 H28B H13 H 0 0 N N N N N N 52.248 -32.571 -1.089 3.216 -2.707 3.041 H28B A1JA5 47 A1JA5 H11A H14 H 0 0 N N N N N N 51.256 -33.092 -5.561 -2.709 -1.024 -2.536 H11A A1JA5 48 A1JA5 H11B H15 H 0 0 N N N N N N 49.855 -32.650 -6.595 -2.195 -2.598 -1.883 H11B A1JA5 49 A1JA5 H14A H16 H 0 0 N N N N N N 51.825 -35.986 -9.201 -5.553 -1.092 1.048 H14A A1JA5 50 A1JA5 H14B H17 H 0 0 N N N N N N 52.612 -35.913 -7.588 -6.269 0.328 0.248 H14B A1JA5 51 A1JA5 H23A H18 H 0 0 N N N N N N 52.007 -35.481 -5.536 -5.018 -2.170 -2.691 H23A A1JA5 52 A1JA5 H23B H19 H 0 0 N N N N N N 50.510 -35.703 -4.568 -4.274 -3.594 -1.925 H23B A1JA5 53 A1JA5 H29A H20 H 0 0 N N N N N N 52.956 -30.215 -0.865 4.718 -4.313 1.906 H29A A1JA5 54 A1JA5 H29B H21 H 0 0 N N N N N N 51.354 -29.790 -0.172 3.844 -4.056 0.375 H29B A1JA5 55 A1JA5 H3 H22 H 0 1 N N N N N N 42.643 -29.812 -4.002 -0.260 6.426 0.092 H3 A1JA5 56 A1JA5 H30 H23 H 0 1 N N N N N N 53.301 -31.835 0.993 5.361 -1.932 1.960 H30 A1JA5 57 A1JA5 H31B H24 H 0 0 N N N N N N 54.061 -29.449 1.086 6.766 -3.593 0.701 H31B A1JA5 58 A1JA5 H31A H25 H 0 0 N N N N N N 52.577 -29.073 2.026 5.898 -3.147 -0.787 H31A A1JA5 59 A1JA5 H39B H26 H 0 0 N N N N N N 51.752 -31.778 2.929 4.801 -0.450 0.068 H39B A1JA5 60 A1JA5 H39A H27 H 0 0 N N N N N N 50.671 -30.671 2.017 3.894 -1.768 -0.714 H39A A1JA5 61 A1JA5 H40A H28 H 0 0 N N N N N N 49.892 -33.000 1.807 3.263 -0.529 2.005 H40A A1JA5 62 A1JA5 H40B H29 H 0 0 N N N N N N 51.503 -33.498 1.186 2.361 -0.246 0.497 H40B A1JA5 63 A1JA5 H41 H30 H 0 1 N N N N N N 47.280 -32.518 -1.431 0.828 0.851 1.685 H41 A1JA5 64 A1JA5 H42 H31 H 0 1 N N N N N N 46.295 -30.549 -1.907 -2.010 2.840 -1.416 H42 A1JA5 65 A1JA5 H9 H32 H 0 1 N N N N N N 47.670 -32.468 -5.678 -2.148 1.038 -1.392 H9 A1JA5 66 A1JA5 H32 H34 H 0 1 N N N N N N 54.057 -31.206 3.262 6.899 -0.788 0.400 H32 A1JA5 67 A1JA5 C1 C28 C 0 1 N N N N N N ? ? ? -8.016 -1.794 0.159 C1 A1JA5 68 A1JA5 C5 C29 C 0 1 N N N N N N ? ? ? -8.708 -0.456 0.433 C5 A1JA5 69 A1JA5 C12 C30 C 0 1 N N N N N N ? ? ? -9.997 -0.706 1.219 C12 A1JA5 70 A1JA5 N1 N4 N 0 1 N N N N N N ? ? ? -10.882 -1.586 0.443 N1 A1JA5 71 A1JA5 C17 C31 C 0 1 N N N N N N ? ? ? -10.257 -2.894 0.208 C17 A1JA5 72 A1JA5 C18 C32 C 0 1 N N N N N N ? ? ? -8.975 -2.709 -0.608 C18 A1JA5 73 A1JA5 H2 H2 H 0 1 N N N N N N ? ? ? -7.741 -2.263 1.104 H2 A1JA5 74 A1JA5 H4 H33 H 0 1 N N N N N N ? ? ? -8.045 0.184 1.016 H4 A1JA5 75 A1JA5 H5 H34 H 0 1 N N N N N N ? ? ? -8.946 0.031 -0.512 H5 A1JA5 76 A1JA5 H7 H35 H 0 1 N N N N N N ? ? ? -9.757 -1.181 2.170 H7 A1JA5 77 A1JA5 H8 H36 H 0 1 N N N N N N ? ? ? -10.500 0.243 1.404 H8 A1JA5 78 A1JA5 H10 H37 H 0 1 N N N N N N ? ? ? -11.777 -1.689 0.897 H10 A1JA5 79 A1JA5 H11 H38 H 0 1 N N N N N N ? ? ? -10.015 -3.358 1.164 H11 A1JA5 80 A1JA5 H12 H39 H 0 1 N N N N N N ? ? ? -10.948 -3.533 -0.341 H12 A1JA5 81 A1JA5 H13 H40 H 0 1 N N N N N N ? ? ? -9.218 -2.257 -1.569 H13 A1JA5 82 A1JA5 H14 H41 H 0 1 N N N N N N ? ? ? -8.503 -3.678 -0.769 H14 A1JA5 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JA5 C14 C13 SING N N 1 A1JA5 C14 C15 SING N N 2 A1JA5 C13 N12 SING N N 3 A1JA5 C15 C22 SING N N 4 A1JA5 N12 C11 SING N N 5 A1JA5 N12 C23 SING N N 6 A1JA5 CL5 C4 SING N N 7 A1JA5 C22 C23 SING N N 8 A1JA5 C11 C10 SING N N 9 A1JA5 C4 C6 DOUB Y N 10 A1JA5 C4 C3 SING Y N 11 A1JA5 C6 C7 SING Y N 12 A1JA5 C9 C10 DOUB Y N 13 A1JA5 C9 C8 SING Y N 14 A1JA5 C10 C24 SING Y N 15 A1JA5 C3 C2 DOUB Y N 16 A1JA5 C7 C8 SING N N 17 A1JA5 C7 C42 DOUB Y N 18 A1JA5 C8 C41 DOUB Y N 19 A1JA5 C24 C25 DOUB Y N 20 A1JA5 C2 C42 SING Y N 21 A1JA5 C2 CL1 SING N N 22 A1JA5 C41 C25 SING Y N 23 A1JA5 C25 C26 SING N N 24 A1JA5 C28 C29 SING N N 25 A1JA5 C28 N27 SING N N 26 A1JA5 C26 N27 SING N N 27 A1JA5 C29 C30 SING N N 28 A1JA5 N27 C40 SING N N 29 A1JA5 C30 C31 SING N N 30 A1JA5 C30 C39 SING N N 31 A1JA5 C40 C39 SING N N 32 A1JA5 C31 N32 SING N N 33 A1JA5 N32 C33 SING N N 34 A1JA5 O38 C33 DOUB N N 35 A1JA5 C33 C34 SING N N 36 A1JA5 C34 F35 SING N N 37 A1JA5 C34 F37 SING N N 38 A1JA5 C34 F36 SING N N 39 A1JA5 C6 H6 SING N N 40 A1JA5 C13 H13B SING N N 41 A1JA5 C13 H13A SING N N 42 A1JA5 C15 H1 SING N N 43 A1JA5 C22 H22A SING N N 44 A1JA5 C22 H22B SING N N 45 A1JA5 C24 H24 SING N N 46 A1JA5 C26 H26A SING N N 47 A1JA5 C26 H26B SING N N 48 A1JA5 C28 H28A SING N N 49 A1JA5 C28 H28B SING N N 50 A1JA5 C11 H11A SING N N 51 A1JA5 C11 H11B SING N N 52 A1JA5 C14 H14A SING N N 53 A1JA5 C14 H14B SING N N 54 A1JA5 C23 H23A SING N N 55 A1JA5 C23 H23B SING N N 56 A1JA5 C29 H29A SING N N 57 A1JA5 C29 H29B SING N N 58 A1JA5 C3 H3 SING N N 59 A1JA5 C30 H30 SING N N 60 A1JA5 C31 H31B SING N N 61 A1JA5 C31 H31A SING N N 62 A1JA5 C39 H39B SING N N 63 A1JA5 C39 H39A SING N N 64 A1JA5 C40 H40A SING N N 65 A1JA5 C40 H40B SING N N 66 A1JA5 C41 H41 SING N N 67 A1JA5 C42 H42 SING N N 68 A1JA5 C9 H9 SING N N 69 A1JA5 N32 H32 SING N N 70 A1JA5 C15 C1 SING N N 71 A1JA5 C1 C5 SING N N 72 A1JA5 C5 C12 SING N N 73 A1JA5 C12 N1 SING N N 74 A1JA5 N1 C17 SING N N 75 A1JA5 C17 C18 SING N N 76 A1JA5 C18 C1 SING N N 77 A1JA5 C1 H2 SING N N 78 A1JA5 C5 H4 SING N N 79 A1JA5 C5 H5 SING N N 80 A1JA5 C12 H7 SING N N 81 A1JA5 C12 H8 SING N N 82 A1JA5 N1 H10 SING N N 83 A1JA5 C17 H11 SING N N 84 A1JA5 C17 H12 SING N N 85 A1JA5 C18 H13 SING N N 86 A1JA5 C18 H14 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JA5 InChI InChI 1.06 "InChI=1S/C32H41Cl2F3N4O/c33-29-16-28(17-30(34)18-29)27-14-23(20-40-9-3-22(4-10-40)19-39-31(42)32(35,36)37)13-24(15-27)21-41-11-5-26(6-12-41)25-1-7-38-8-2-25/h13-18,22,25-26,38H,1-12,19-21H2,(H,39,42)" A1JA5 InChIKey InChI 1.06 OEDBVRNUMCXGJG-UHFFFAOYSA-N A1JA5 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)C(=O)NC[C@@H]1CCN(CC1)Cc2cc(CN3CC[C@H](CC3)C4CCNCC4)cc(c2)c5cc(Cl)cc(Cl)c5" A1JA5 SMILES CACTVS 3.385 "FC(F)(F)C(=O)NC[CH]1CCN(CC1)Cc2cc(CN3CC[CH](CC3)C4CCNCC4)cc(c2)c5cc(Cl)cc(Cl)c5" A1JA5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(cc1CN2CCC(CC2)C3CCNCC3)c4cc(cc(c4)Cl)Cl)CN5CCC(CC5)CNC(=O)C(F)(F)F" A1JA5 SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(cc1CN2CCC(CC2)C3CCNCC3)c4cc(cc(c4)Cl)Cl)CN5CCC(CC5)CNC(=O)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1JA5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[1-[[3-[3,5-bis(chloranyl)phenyl]-5-[(4-piperidin-4-ylpiperidin-1-yl)methyl]phenyl]methyl]piperidin-4-yl]methyl]-2,2,2-tris(fluoranyl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JA5 "Create component" 2025-04-14 PDBE A1JA5 "Initial release" 2025-12-24 RCSB #