data_A1JA6 # _chem_comp.id A1JA6 _chem_comp.name "~{N}-[[1-[[3-[3,5-bis(chloranyl)phenyl]-5-[[4-(1-methylpiperidin-4-yl)piperazin-1-yl]methyl]phenyl]methyl]piperidin-4-yl]methyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H45 Cl2 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-14 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 586.639 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JA6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QWB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JA6 CAB C1 C 0 1 Y N N N N N 44.454 -30.013 -2.846 4.117 3.409 -1.452 CAB A1JA6 1 A1JA6 CAC C2 C 0 1 Y N N N N N 43.606 -30.265 -3.892 3.423 4.501 -1.943 CAC A1JA6 2 A1JA6 CAD C3 C 0 1 Y N N N N N 43.982 -31.206 -4.817 2.168 4.810 -1.449 CAD A1JA6 3 A1JA6 CAF C4 C 0 1 Y N N N N N 45.160 -31.905 -4.720 1.601 4.027 -0.461 CAF A1JA6 4 A1JA6 CAG C5 C 0 1 Y N N N N N 45.990 -31.654 -3.652 2.295 2.927 0.037 CAG A1JA6 5 A1JA6 CAH C6 C 0 1 Y N N N N N 47.335 -32.333 -3.505 1.690 2.083 1.098 CAH A1JA6 6 A1JA6 CAI C7 C 0 1 Y N N N N N 48.106 -32.546 -4.644 0.424 2.386 1.595 CAI A1JA6 7 A1JA6 CAJ C8 C 0 1 Y N N N N N 49.357 -33.120 -4.545 -0.134 1.597 2.581 CAJ A1JA6 8 A1JA6 CAK C9 C 0 1 N N N N N N 50.194 -33.356 -5.811 -1.503 1.923 3.119 CAK A1JA6 9 A1JA6 CAM C10 C 0 1 N N N N N N 50.608 -35.704 -5.486 -2.560 1.735 0.949 CAM A1JA6 10 A1JA6 CAN C11 C 0 1 N N N N N N 51.529 -36.725 -6.166 -3.574 0.928 0.135 CAN A1JA6 11 A1JA6 CAW C12 C 0 1 N N N N N N 50.824 -35.985 -8.362 -4.858 0.516 2.145 CAW A1JA6 12 A1JA6 CAX C13 C 0 1 N N N N N N 50.853 -34.663 -7.618 -3.843 1.323 2.959 CAX A1JA6 13 A1JA6 CAY C14 C 0 1 Y N N N N N 49.861 -33.420 -3.289 0.562 0.508 3.075 CAY A1JA6 14 A1JA6 CAZ C15 C 0 1 Y N N N N N 49.107 -33.178 -2.149 1.819 0.204 2.586 CAZ A1JA6 15 A1JA6 CBA C16 C 0 1 N N N N N N 49.680 -33.517 -0.777 2.570 -0.984 3.129 CBA A1JA6 16 A1JA6 CBC C17 C 0 1 N N N N N N 51.424 -31.821 -0.965 2.763 -3.392 2.974 CBC A1JA6 17 A1JA6 CBD C18 C 0 1 N N N N N N 52.128 -30.615 -0.304 2.280 -4.622 2.202 CBD A1JA6 18 A1JA6 CBE C19 C 0 1 N N N N N N 52.568 -30.977 1.112 2.767 -4.533 0.753 CBE A1JA6 19 A1JA6 CBF C20 C 0 1 N N N N N N 53.162 -29.733 1.785 2.236 -5.729 -0.039 CBF A1JA6 20 A1JA6 CBH C21 C 0 1 N N N N N N 54.402 -29.181 3.869 2.469 -6.672 -2.274 CBH A1JA6 21 A1JA6 CBI C22 C 0 1 N N N N N N 55.061 -29.675 5.150 3.048 -6.650 -3.665 CBI A1JA6 22 A1JA6 CBK C23 C 0 1 N N N N N N 51.378 -31.471 1.886 2.250 -3.234 0.127 CBK A1JA6 23 A1JA6 CBL C24 C 0 1 N N N N N N 50.691 -32.630 1.178 2.734 -2.045 0.960 CBL A1JA6 24 A1JA6 CBM C25 C 0 1 Y N N N N N 47.843 -32.616 -2.253 2.384 0.982 1.596 CBM A1JA6 25 A1JA6 CBN C26 C 0 1 Y N N N N N 45.646 -30.696 -2.716 3.558 2.620 -0.464 CBN A1JA6 26 A1JA6 NAL N1 N 0 1 N N N N N N 50.086 -34.695 -6.382 -2.521 1.223 2.326 NAL A1JA6 27 A1JA6 NAO N2 N 0 1 N N N N N N 51.154 -37.116 -7.519 -4.897 1.028 0.768 NAO A1JA6 28 A1JA6 NBB N3 N 0 1 N N N N N N 50.270 -32.321 -0.189 2.241 -2.176 2.337 NBB A1JA6 29 A1JA6 NBG N4 N 0 1 N N N N N N 53.794 -30.156 3.018 2.798 -5.708 -1.392 NBG A1JA6 30 A1JA6 OBJ O1 O 0 1 N N N N N N 54.398 -28.038 3.550 1.706 -7.557 -1.949 OBJ A1JA6 31 A1JA6 CLAA CL1 CL 0 0 N N N N N N 43.997 -28.797 -1.656 5.688 3.024 -2.082 CLAA A1JA6 32 A1JA6 CLAE CL2 CL 0 0 N N N N N N 42.914 -31.515 -6.174 1.304 6.181 -2.070 CLAE A1JA6 33 A1JA6 HAC H1 H 0 1 N N N N N N 42.668 -29.738 -3.986 3.864 5.115 -2.715 HAC A1JA6 34 A1JA6 HAF H2 H 0 1 N N N N N N 45.429 -32.637 -5.467 0.622 4.269 -0.075 HAF A1JA6 35 A1JA6 HAI H3 H 0 1 N N N N N N 47.722 -32.260 -5.612 -0.120 3.236 1.210 HAI A1JA6 36 A1JA6 HAK H4 H 0 1 N N N N N N 51.250 -33.176 -5.560 -1.570 1.604 4.160 HAK A1JA6 37 A1JA6 HAL H5 H 0 1 N N N N N N 49.870 -32.633 -6.574 -1.671 2.999 3.059 HAL A1JA6 38 A1JA6 HAM H6 H 0 1 N N N N N N 51.177 -35.200 -4.691 -1.572 1.639 0.497 HAM A1JA6 39 A1JA6 HAN H7 H 0 1 N N N N N N 49.759 -36.245 -5.042 -2.854 2.784 0.959 HAN A1JA6 40 A1JA6 HAP H8 H 0 1 N N N N N N 51.544 -37.632 -5.544 -3.626 1.326 -0.879 HAP A1JA6 41 A1JA6 HAO H9 H 0 1 N N N N N N 52.540 -36.293 -6.208 -3.265 -0.116 0.101 HAO A1JA6 42 A1JA6 HA3 H10 H 0 1 N N N N N N 49.814 -36.135 -8.771 -4.564 -0.534 2.134 HA3 A1JA6 43 A1JA6 HA2 H11 H 0 1 N N N N N N 51.550 -35.939 -9.187 -5.846 0.612 2.596 HA2 A1JA6 44 A1JA6 HA5 H12 H 0 1 N N N N N N 51.898 -34.418 -7.377 -4.153 2.367 2.992 HA5 A1JA6 45 A1JA6 HA4 H13 H 0 1 N N N N N N 50.435 -33.883 -8.271 -3.792 0.925 3.973 HA4 A1JA6 46 A1JA6 HA6 H14 H 0 1 N N N N N N 50.849 -33.846 -3.197 0.121 -0.106 3.846 HA6 A1JA6 47 A1JA6 HBA H15 H 0 1 N N N N N N 48.875 -33.888 -0.125 3.642 -0.793 3.072 HBA A1JA6 48 A1JA6 HBB H16 H 0 1 N N N N N N 50.453 -34.293 -0.884 2.286 -1.149 4.169 HBB A1JA6 49 A1JA6 HBC H17 H 0 1 N N N N N N 51.069 -31.516 -1.961 2.406 -3.445 4.002 HBC A1JA6 50 A1JA6 HBD H18 H 0 1 N N N N N N 52.154 -32.637 -1.070 3.853 -3.365 2.969 HBD A1JA6 51 A1JA6 HBF H19 H 0 1 N N N N N N 53.010 -30.337 -0.899 2.680 -5.523 2.666 HBF A1JA6 52 A1JA6 HBE H20 H 0 1 N N N N N N 51.431 -29.765 -0.262 1.190 -4.656 2.218 HBE A1JA6 53 A1JA6 HBG H21 H 0 1 N N N N N N 53.334 -31.766 1.066 3.857 -4.539 0.734 HBG A1JA6 54 A1JA6 HBI H22 H 0 1 N N N N N N 53.907 -29.269 1.122 2.525 -6.654 0.460 HBI A1JA6 55 A1JA6 HBH H23 H 0 1 N N N N N N 52.364 -29.008 2.003 1.149 -5.673 -0.097 HBH A1JA6 56 A1JA6 HBJ H24 H 0 1 N N N N N N 55.504 -28.823 5.687 3.982 -7.211 -3.679 HBJ A1JA6 57 A1JA6 HBL H25 H 0 1 N N N N N N 54.306 -30.158 5.788 2.341 -7.104 -4.360 HBL A1JA6 58 A1JA6 HBK H26 H 0 1 N N N N N N 55.849 -30.401 4.900 3.238 -5.619 -3.963 HBK A1JA6 59 A1JA6 HBN H27 H 0 1 N N N N N N 51.712 -31.807 2.879 2.629 -3.145 -0.891 HBN A1JA6 60 A1JA6 HBM H28 H 0 1 N N N N N N 50.659 -30.646 2.001 1.160 -3.248 0.110 HBM A1JA6 61 A1JA6 HBO H29 H 0 1 N N N N N N 49.801 -32.913 1.759 3.824 -2.025 0.964 HBO A1JA6 62 A1JA6 HBP H30 H 0 1 N N N N N N 51.391 -33.478 1.142 2.356 -1.120 0.525 HBP A1JA6 63 A1JA6 HBQ H31 H 0 1 N N N N N N 47.264 -32.403 -1.366 3.364 0.741 1.211 HBQ A1JA6 64 A1JA6 HBR H32 H 0 1 N N N N N N 46.306 -30.484 -1.888 4.098 1.765 -0.085 HBR A1JA6 65 A1JA6 HBW H37 H 0 1 N N N N N N 53.805 -31.123 3.272 3.408 -5.000 -1.652 HBW A1JA6 66 A1JA6 C1 C27 C 0 1 N N N N N N ? ? ? -5.915 0.328 -0.026 C1 A1JA6 67 A1JA6 C2 C28 C 0 1 N N N N N N ? ? ? -6.013 0.970 -1.413 C2 A1JA6 68 A1JA6 C3 C29 C 0 1 N N N N N N ? ? ? -7.031 0.199 -2.256 C3 A1JA6 69 A1JA6 N1 N5 N 0 1 N N N N N N ? ? ? -6.608 -1.203 -2.375 N1 A1JA6 70 A1JA6 C5 C30 C 0 1 N N N N N N ? ? ? -6.553 -1.854 -1.059 C5 A1JA6 71 A1JA6 C6 C31 C 0 1 N N N N N N ? ? ? -5.521 -1.144 -0.181 C6 A1JA6 72 A1JA6 C7 C32 C 0 1 N N N N N N ? ? ? -7.487 -1.942 -3.291 C7 A1JA6 73 A1JA6 H1 H34 H 0 1 N N N N N N ? ? ? -6.880 0.397 0.476 H1 A1JA6 74 A1JA6 H2 H35 H 0 1 N N N N N N ? ? ? -6.335 2.006 -1.312 H2 A1JA6 75 A1JA6 H3 H36 H 0 1 N N N N N N ? ? ? -5.038 0.937 -1.899 H3 A1JA6 76 A1JA6 H4 H37 H 0 1 N N N N N N ? ? ? -8.008 0.244 -1.776 H4 A1JA6 77 A1JA6 H5 H38 H 0 1 N N N N N N ? ? ? -7.092 0.644 -3.249 H5 A1JA6 78 A1JA6 H6 H39 H 0 1 N N N N N N ? ? ? -7.533 -1.799 -0.585 H6 A1JA6 79 A1JA6 H7 H40 H 0 1 N N N N N N ? ? ? -6.267 -2.898 -1.183 H7 A1JA6 80 A1JA6 H8 H41 H 0 1 N N N N N N ? ? ? -4.538 -1.210 -0.647 H8 A1JA6 81 A1JA6 H9 H42 H 0 1 N N N N N N ? ? ? -5.491 -1.617 0.801 H9 A1JA6 82 A1JA6 H10 H43 H 0 1 N N N N N N ? ? ? -7.452 -1.482 -4.278 H10 A1JA6 83 A1JA6 H11 H44 H 0 1 N N N N N N ? ? ? -7.152 -2.977 -3.360 H11 A1JA6 84 A1JA6 H12 H45 H 0 1 N N N N N N ? ? ? -8.509 -1.916 -2.914 H12 A1JA6 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JA6 CAW CAX SING N N 1 A1JA6 CAW NAO SING N N 2 A1JA6 CAX NAL SING N N 3 A1JA6 NAO CAN SING N N 4 A1JA6 NAL CAK SING N N 5 A1JA6 NAL CAM SING N N 6 A1JA6 CLAE CAD SING N N 7 A1JA6 CAN CAM SING N N 8 A1JA6 CAK CAJ SING N N 9 A1JA6 CAD CAF DOUB Y N 10 A1JA6 CAD CAC SING Y N 11 A1JA6 CAF CAG SING Y N 12 A1JA6 CAI CAJ DOUB Y N 13 A1JA6 CAI CAH SING Y N 14 A1JA6 CAJ CAY SING Y N 15 A1JA6 CAC CAB DOUB Y N 16 A1JA6 CAG CAH SING N N 17 A1JA6 CAG CBN DOUB Y N 18 A1JA6 CAH CBM DOUB Y N 19 A1JA6 CAY CAZ DOUB Y N 20 A1JA6 CAB CBN SING Y N 21 A1JA6 CAB CLAA SING N N 22 A1JA6 CBM CAZ SING Y N 23 A1JA6 CAZ CBA SING N N 24 A1JA6 CBC CBD SING N N 25 A1JA6 CBC NBB SING N N 26 A1JA6 CBA NBB SING N N 27 A1JA6 CBD CBE SING N N 28 A1JA6 NBB CBL SING N N 29 A1JA6 CBE CBF SING N N 30 A1JA6 CBE CBK SING N N 31 A1JA6 CBL CBK SING N N 32 A1JA6 CBF NBG SING N N 33 A1JA6 NBG CBH SING N N 34 A1JA6 OBJ CBH DOUB N N 35 A1JA6 CBH CBI SING N N 36 A1JA6 CAC HAC SING N N 37 A1JA6 CAF HAF SING N N 38 A1JA6 CAI HAI SING N N 39 A1JA6 CAK HAK SING N N 40 A1JA6 CAK HAL SING N N 41 A1JA6 CAM HAM SING N N 42 A1JA6 CAM HAN SING N N 43 A1JA6 CAN HAP SING N N 44 A1JA6 CAN HAO SING N N 45 A1JA6 CAW HA3 SING N N 46 A1JA6 CAW HA2 SING N N 47 A1JA6 CAX HA5 SING N N 48 A1JA6 CAX HA4 SING N N 49 A1JA6 CAY HA6 SING N N 50 A1JA6 CBA HBA SING N N 51 A1JA6 CBA HBB SING N N 52 A1JA6 CBC HBC SING N N 53 A1JA6 CBC HBD SING N N 54 A1JA6 CBD HBF SING N N 55 A1JA6 CBD HBE SING N N 56 A1JA6 CBE HBG SING N N 57 A1JA6 CBF HBI SING N N 58 A1JA6 CBF HBH SING N N 59 A1JA6 CBI HBJ SING N N 60 A1JA6 CBI HBL SING N N 61 A1JA6 CBI HBK SING N N 62 A1JA6 CBK HBN SING N N 63 A1JA6 CBK HBM SING N N 64 A1JA6 CBL HBO SING N N 65 A1JA6 CBL HBP SING N N 66 A1JA6 CBM HBQ SING N N 67 A1JA6 CBN HBR SING N N 68 A1JA6 NBG HBW SING N N 69 A1JA6 NAO C1 SING N N 70 A1JA6 C1 C2 SING N N 71 A1JA6 C2 C3 SING N N 72 A1JA6 C3 N1 SING N N 73 A1JA6 N1 C5 SING N N 74 A1JA6 C5 C6 SING N N 75 A1JA6 C6 C1 SING N N 76 A1JA6 N1 C7 SING N N 77 A1JA6 C1 H1 SING N N 78 A1JA6 C2 H2 SING N N 79 A1JA6 C2 H3 SING N N 80 A1JA6 C3 H4 SING N N 81 A1JA6 C3 H5 SING N N 82 A1JA6 C5 H6 SING N N 83 A1JA6 C5 H7 SING N N 84 A1JA6 C6 H8 SING N N 85 A1JA6 C6 H9 SING N N 86 A1JA6 C7 H10 SING N N 87 A1JA6 C7 H11 SING N N 88 A1JA6 C7 H12 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JA6 InChI InChI 1.06 "InChI=1S/C32H45Cl2N5O/c1-24(40)35-21-25-3-9-37(10-4-25)22-26-15-27(17-28(16-26)29-18-30(33)20-31(34)19-29)23-38-11-13-39(14-12-38)32-5-7-36(2)8-6-32/h15-20,25,32H,3-14,21-23H2,1-2H3,(H,35,40)" A1JA6 InChIKey InChI 1.06 CZHJIRYUHXUOHG-UHFFFAOYSA-N A1JA6 SMILES_CANONICAL CACTVS 3.385 "CN1CCC(CC1)N2CCN(CC2)Cc3cc(CN4CCC(CC4)CNC(C)=O)cc(c3)c5cc(Cl)cc(Cl)c5" A1JA6 SMILES CACTVS 3.385 "CN1CCC(CC1)N2CCN(CC2)Cc3cc(CN4CCC(CC4)CNC(C)=O)cc(c3)c5cc(Cl)cc(Cl)c5" A1JA6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCC1CCN(CC1)Cc2cc(cc(c2)c3cc(cc(c3)Cl)Cl)CN4CCN(CC4)C5CCN(CC5)C" A1JA6 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NCC1CCN(CC1)Cc2cc(cc(c2)c3cc(cc(c3)Cl)Cl)CN4CCN(CC4)C5CCN(CC5)C" # _pdbx_chem_comp_identifier.comp_id A1JA6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[1-[[3-[3,5-bis(chloranyl)phenyl]-5-[[4-(1-methylpiperidin-4-yl)piperazin-1-yl]methyl]phenyl]methyl]piperidin-4-yl]methyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JA6 "Create component" 2025-04-14 PDBE A1JA6 "Initial release" 2025-12-24 RCSB #