data_A1JAE # _chem_comp.id A1JAE _chem_comp.name "~{N}-[2-chloranyl-3-[2-chloranyl-3-[4-[[[2-(hydroxymethyl)-1,3-bis(oxidanyl)propan-2-yl]amino]methyl]-3-methoxy-phenyl]phenyl]phenyl]-5-[[[2-(hydroxymethyl)-1,3-bis(oxidanyl)propan-2-yl]amino]methyl]pyridine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H40 Cl2 N4 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-07 _chem_comp.pdbx_modified_date 2026-02-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 715.620 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JAE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QSM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JAE C1 C1 C 0 1 N N N N N N 5.266 0.058 14.322 8.395 2.197 -0.254 C1 A1JAE 1 A1JAE O1 O1 O 0 1 N N N N N N 5.517 -0.472 13.008 7.982 0.846 -0.468 O1 A1JAE 2 A1JAE C2 C2 C 0 1 Y N N N N N 5.525 -1.759 12.472 6.684 0.547 -0.196 C2 A1JAE 3 A1JAE C3 C3 C 0 1 Y N N N N N 6.676 -2.388 11.989 5.829 1.533 0.266 C3 A1JAE 4 A1JAE C4 C4 C 0 1 Y N N N N N 6.657 -3.671 11.424 4.499 1.223 0.542 C4 A1JAE 5 A1JAE C5 C5 C 0 1 Y N N N N N 7.833 -4.438 10.907 3.577 2.275 1.037 C5 A1JAE 6 A1JAE C6 C6 C 0 1 Y N N N N N 7.617 -5.157 9.738 3.951 3.085 2.108 C6 A1JAE 7 A1JAE C7 C7 C 0 1 Y N N N N N 8.626 -5.959 9.186 3.094 4.064 2.570 C7 A1JAE 8 A1JAE C8 C8 C 0 1 Y N N N N N 9.891 -6.024 9.753 1.862 4.249 1.974 C8 A1JAE 9 A1JAE C9 C9 C 0 1 Y N N N N N 10.166 -5.295 10.914 1.477 3.446 0.901 C9 A1JAE 10 A1JAE C10 C10 C 0 1 Y N N N N N 11.501 -5.442 11.571 0.153 3.646 0.262 C10 A1JAE 11 A1JAE C11 C11 C 0 1 Y N N N N N 11.571 -6.101 12.806 -0.127 4.835 -0.409 C11 A1JAE 12 A1JAE C12 C12 C 0 1 Y N N N N N 12.776 -6.327 13.461 -1.359 5.019 -1.004 C12 A1JAE 13 A1JAE C13 C13 C 0 1 Y N N N N N 13.969 -5.861 12.921 -2.319 4.028 -0.937 C13 A1JAE 14 A1JAE C14 C14 C 0 1 Y N N N N N 13.921 -5.232 11.674 -2.051 2.839 -0.271 C14 A1JAE 15 A1JAE N1 N1 N 0 1 N N N N N N 15.051 -4.708 11.037 -3.025 1.838 -0.204 N1 A1JAE 16 A1JAE C15 C15 C 0 1 N N N N N N 16.268 -5.249 11.069 -3.986 1.769 -1.147 C15 A1JAE 17 A1JAE O2 O2 O 0 1 N N N N N N 16.536 -6.336 11.517 -3.949 2.513 -2.108 O2 A1JAE 18 A1JAE C16 C16 C 0 1 Y N N N N N 17.287 -4.430 10.359 -5.088 0.788 -1.012 C16 A1JAE 19 A1JAE C17 C17 C 0 1 Y N N N N N 18.586 -4.880 10.261 -6.078 0.722 -1.990 C17 A1JAE 20 A1JAE C18 C18 C 0 1 Y N N N N N 19.464 -4.074 9.562 -7.102 -0.201 -1.850 C18 A1JAE 21 A1JAE C19 C19 C 0 1 Y N N N N N 19.027 -2.890 8.968 -7.100 -1.026 -0.736 C19 A1JAE 22 A1JAE C20 C20 C 0 1 N N N N N N 19.961 -1.984 8.190 -8.197 -2.041 -0.539 C20 A1JAE 23 A1JAE N2 N2 N 0 1 N N N N N N 20.395 -2.649 6.937 -9.299 -1.430 0.216 N2 A1JAE 24 A1JAE C21 C21 C 0 1 N N N N N N 21.831 -2.944 6.691 -10.389 -2.391 0.428 C21 A1JAE 25 A1JAE C22 C22 C 0 1 N N N N N N 22.549 -1.635 6.323 -10.924 -2.862 -0.927 C22 A1JAE 26 A1JAE O3 O3 O 0 1 N N N N N N 22.070 -0.403 6.898 -11.308 -1.728 -1.707 O3 A1JAE 27 A1JAE C23 C23 C 0 1 N N N N N N 21.921 -3.898 5.493 -9.863 -3.594 1.214 C23 A1JAE 28 A1JAE O4 O4 O 0 1 N N N N N N 21.133 -3.590 4.353 -9.364 -3.154 2.478 O4 A1JAE 29 A1JAE C24 C24 C 0 1 N N N N N N 22.498 -3.726 7.837 -11.516 -1.720 1.215 C24 A1JAE 30 A1JAE O5 O5 O 0 1 N N N N N N 21.932 -4.979 8.244 -12.576 -2.656 1.421 O5 A1JAE 31 A1JAE C25 C25 C 0 1 Y N N N N N 17.705 -2.559 9.113 -6.083 -0.906 0.197 C25 A1JAE 32 A1JAE N3 N3 N 0 1 Y N N N N N 16.825 -3.308 9.793 -5.120 -0.025 0.037 N3 A1JAE 33 A1JAE C26 C26 C 0 1 Y N N N N N 12.713 -5.021 11.007 -0.812 2.643 0.325 C26 A1JAE 34 A1JAE CL1 CL1 CL 0 0 N N N N N N 12.741 -4.188 9.491 -0.469 1.156 1.153 CL1 A1JAE 35 A1JAE C27 C27 C 0 1 Y N N N N N 9.128 -4.516 11.471 2.339 2.460 0.428 C27 A1JAE 36 A1JAE CL2 CL2 CL 0 0 N N N N N N 9.476 -3.588 12.896 1.868 1.461 -0.911 CL2 A1JAE 37 A1JAE C28 C28 C 0 1 Y N N N N N 5.376 -4.201 11.201 4.038 -0.078 0.353 C28 A1JAE 38 A1JAE C29 C29 C 0 1 Y N N N N N 4.234 -3.567 11.667 4.898 -1.055 -0.108 C29 A1JAE 39 A1JAE C30 C30 C 0 1 Y N N N N N 4.273 -2.299 12.221 6.215 -0.746 -0.387 C30 A1JAE 40 A1JAE C31 C31 C 0 1 N N N N N N 3.036 -1.556 12.664 7.148 -1.817 -0.890 C31 A1JAE 41 A1JAE N4 N4 N 0 1 N N N N N N 2.581 -2.215 13.923 7.974 -2.308 0.221 N4 A1JAE 42 A1JAE C32 C32 C 0 1 N N N N N N 1.512 -1.576 14.757 8.898 -3.356 -0.233 C32 A1JAE 43 A1JAE C33 C33 C 0 1 N N N N N N 0.236 -1.427 13.916 8.098 -4.528 -0.805 C33 A1JAE 44 A1JAE O6 O6 O 0 1 N N N N N N -0.867 -0.740 14.543 7.156 -4.982 0.169 O6 A1JAE 45 A1JAE C34 C34 C 0 1 N N N N N N 1.965 -0.196 15.278 9.819 -2.790 -1.315 C34 A1JAE 46 A1JAE O7 O7 O 0 1 N N N N N N 2.875 -0.078 16.418 10.566 -1.695 -0.781 O7 A1JAE 47 A1JAE C35 C35 C 0 1 N N N N N N 1.168 -2.541 15.901 9.739 -3.841 0.950 C35 A1JAE 48 A1JAE O8 O8 O 0 1 N N N N N N 1.624 -3.886 15.741 10.638 -4.860 0.509 O8 A1JAE 49 A1JAE H1 H1 H 0 1 N N N N N N 5.367 1.153 14.302 8.247 2.461 0.793 H1 A1JAE 50 A1JAE H2 H2 H 0 1 N N N N N N 4.247 -0.210 14.637 9.450 2.299 -0.508 H2 A1JAE 51 A1JAE H3 H3 H 0 1 N N N N N N 5.992 -0.364 15.032 7.803 2.862 -0.884 H3 A1JAE 52 A1JAE H4 H4 H 0 1 N N N N N N 7.618 -1.864 12.054 6.191 2.540 0.411 H4 A1JAE 53 A1JAE H5 H5 H 0 1 N N N N N N 6.657 -5.097 9.247 4.913 2.945 2.579 H5 A1JAE 54 A1JAE H6 H6 H 0 1 N N N N N N 8.414 -6.539 8.300 3.389 4.688 3.401 H6 A1JAE 55 A1JAE H7 H7 H 0 1 N N N N N N 10.659 -6.634 9.300 1.196 5.016 2.339 H7 A1JAE 56 A1JAE H8 H8 H 0 1 N N N N N N 10.656 -6.445 13.265 0.620 5.613 -0.464 H8 A1JAE 57 A1JAE H9 H9 H 0 1 N N N N N N 12.785 -6.868 14.396 -1.573 5.942 -1.524 H9 A1JAE 58 A1JAE H10 H10 H 0 1 N N N N N N 14.904 -5.981 13.449 -3.282 4.177 -1.404 H10 A1JAE 59 A1JAE H11 H11 H 0 1 N N N N N N 14.936 -3.861 10.517 -3.010 1.193 0.520 H11 A1JAE 60 A1JAE H12 H12 H 0 1 N N N N N N 18.901 -5.812 10.706 -6.048 1.381 -2.845 H12 A1JAE 61 A1JAE H13 H13 H 0 1 N N N N N N 20.501 -4.364 9.475 -7.884 -0.275 -2.591 H13 A1JAE 62 A1JAE H14 H14 H 0 1 N N N N N N 20.844 -1.758 8.806 -8.563 -2.374 -1.510 H14 A1JAE 63 A1JAE H15 H15 H 0 1 N N N N N N 19.437 -1.049 7.942 -7.807 -2.895 0.014 H15 A1JAE 64 A1JAE H16 H16 H 0 1 N N N N N N 20.090 -2.066 6.184 -9.636 -0.598 -0.245 H16 A1JAE 65 A1JAE H18 H18 H 0 1 N N N N N N 23.601 -1.746 6.624 -10.147 -3.418 -1.451 H18 A1JAE 66 A1JAE H19 H19 H 0 1 N N N N N N 22.489 -1.528 5.230 -11.790 -3.506 -0.771 H19 A1JAE 67 A1JAE H20 H20 H 0 1 N N N N N N 22.602 0.320 6.587 -11.657 -1.952 -2.581 H20 A1JAE 68 A1JAE H21 H21 H 0 1 N N N N N N 21.620 -4.896 5.843 -10.672 -4.307 1.371 H21 A1JAE 69 A1JAE H22 H22 H 0 1 N N N N N N 22.972 -3.924 5.170 -9.061 -4.072 0.652 H22 A1JAE 70 A1JAE H23 H23 H 0 1 N N N N N N 21.273 -4.249 3.683 -9.013 -3.866 3.032 H23 A1JAE 71 A1JAE H24 H24 H 0 1 N N N N N N 23.536 -3.925 7.531 -11.135 -1.385 2.180 H24 A1JAE 72 A1JAE H25 H25 H 0 1 N N N N N N 22.496 -3.069 8.719 -11.891 -0.863 0.655 H25 A1JAE 73 A1JAE H26 H26 H 0 1 N N N N N N 22.446 -5.343 8.955 -13.327 -2.298 1.915 H26 A1JAE 74 A1JAE H27 H27 H 0 1 N N N N N N 17.353 -1.646 8.655 -6.079 -1.547 1.066 H27 A1JAE 75 A1JAE H28 H28 H 0 1 N N N N N N 5.278 -5.126 10.653 3.008 -0.322 0.567 H28 A1JAE 76 A1JAE H29 H29 H 0 1 N N N N N N 3.285 -4.078 11.595 4.538 -2.063 -0.254 H29 A1JAE 77 A1JAE H30 H30 H 0 1 N N N N N N 3.274 -0.498 12.852 6.566 -2.641 -1.302 H30 A1JAE 78 A1JAE H31 H31 H 0 1 N N N N N N 2.254 -1.625 11.894 7.792 -1.403 -1.666 H31 A1JAE 79 A1JAE H32 H32 H 0 1 N N N N N N 2.246 -3.123 13.670 8.474 -1.551 0.662 H32 A1JAE 80 A1JAE H34 H34 H 0 1 N N N N N N -0.108 -2.437 13.647 7.568 -4.203 -1.700 H34 A1JAE 81 A1JAE H35 H35 H 0 1 N N N N N N 0.500 -0.874 13.003 8.778 -5.341 -1.059 H35 A1JAE 82 A1JAE H36 H36 H 0 1 N N N N N N -1.601 -0.703 13.941 6.613 -5.725 -0.126 H36 A1JAE 83 A1JAE H37 H37 H 0 1 N N N N N N 2.456 0.310 14.434 10.505 -3.568 -1.652 H37 A1JAE 84 A1JAE H38 H38 H 0 1 N N N N N N 1.050 0.350 15.552 9.220 -2.444 -2.158 H38 A1JAE 85 A1JAE H39 H39 H 0 1 N N N N N N 3.043 0.840 16.596 11.172 -1.286 -1.414 H39 A1JAE 86 A1JAE H40 H40 H 0 1 N N N N N N 1.613 -2.142 16.824 10.309 -3.006 1.358 H40 A1JAE 87 A1JAE H41 H41 H 0 1 N N N N N N 0.073 -2.566 16.003 9.083 -4.244 1.721 H41 A1JAE 88 A1JAE H42 H42 H 0 1 N N N N N N 1.364 -4.401 16.496 11.204 -5.215 1.208 H42 A1JAE 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JAE O4 C23 SING N N 1 A1JAE C23 C21 SING N N 2 A1JAE C22 C21 SING N N 3 A1JAE C22 O3 SING N N 4 A1JAE C21 N2 SING N N 5 A1JAE C21 C24 SING N N 6 A1JAE N2 C20 SING N N 7 A1JAE C24 O5 SING N N 8 A1JAE C20 C19 SING N N 9 A1JAE C19 C25 DOUB Y N 10 A1JAE C19 C18 SING Y N 11 A1JAE C25 N3 SING Y N 12 A1JAE C7 C6 DOUB Y N 13 A1JAE C7 C8 SING Y N 14 A1JAE CL1 C26 SING N N 15 A1JAE C18 C17 DOUB Y N 16 A1JAE C6 C5 SING Y N 17 A1JAE C8 C9 DOUB Y N 18 A1JAE N3 C16 DOUB Y N 19 A1JAE C17 C16 SING Y N 20 A1JAE C16 C15 SING N N 21 A1JAE C5 C4 SING N N 22 A1JAE C5 C27 DOUB Y N 23 A1JAE C9 C27 SING Y N 24 A1JAE C9 C10 SING N N 25 A1JAE C26 C10 DOUB Y N 26 A1JAE C26 C14 SING Y N 27 A1JAE N1 C15 SING N N 28 A1JAE N1 C14 SING N N 29 A1JAE C15 O2 DOUB N N 30 A1JAE C28 C4 DOUB Y N 31 A1JAE C28 C29 SING Y N 32 A1JAE C4 C3 SING Y N 33 A1JAE C27 CL2 SING N N 34 A1JAE C10 C11 SING Y N 35 A1JAE C29 C30 DOUB Y N 36 A1JAE C14 C13 DOUB Y N 37 A1JAE C3 C2 DOUB Y N 38 A1JAE C30 C2 SING Y N 39 A1JAE C30 C31 SING N N 40 A1JAE C2 O1 SING N N 41 A1JAE C31 N4 SING N N 42 A1JAE C11 C12 DOUB Y N 43 A1JAE C13 C12 SING Y N 44 A1JAE O1 C1 SING N N 45 A1JAE C33 O6 SING N N 46 A1JAE C33 C32 SING N N 47 A1JAE N4 C32 SING N N 48 A1JAE C32 C34 SING N N 49 A1JAE C32 C35 SING N N 50 A1JAE C34 O7 SING N N 51 A1JAE O8 C35 SING N N 52 A1JAE C1 H1 SING N N 53 A1JAE C1 H2 SING N N 54 A1JAE C1 H3 SING N N 55 A1JAE C3 H4 SING N N 56 A1JAE C6 H5 SING N N 57 A1JAE C7 H6 SING N N 58 A1JAE C8 H7 SING N N 59 A1JAE C11 H8 SING N N 60 A1JAE C12 H9 SING N N 61 A1JAE C13 H10 SING N N 62 A1JAE N1 H11 SING N N 63 A1JAE C17 H12 SING N N 64 A1JAE C18 H13 SING N N 65 A1JAE C20 H14 SING N N 66 A1JAE C20 H15 SING N N 67 A1JAE N2 H16 SING N N 68 A1JAE C22 H18 SING N N 69 A1JAE C22 H19 SING N N 70 A1JAE O3 H20 SING N N 71 A1JAE C23 H21 SING N N 72 A1JAE C23 H22 SING N N 73 A1JAE O4 H23 SING N N 74 A1JAE C24 H24 SING N N 75 A1JAE C24 H25 SING N N 76 A1JAE O5 H26 SING N N 77 A1JAE C25 H27 SING N N 78 A1JAE C28 H28 SING N N 79 A1JAE C29 H29 SING N N 80 A1JAE C31 H30 SING N N 81 A1JAE C31 H31 SING N N 82 A1JAE N4 H32 SING N N 83 A1JAE C33 H34 SING N N 84 A1JAE C33 H35 SING N N 85 A1JAE O6 H36 SING N N 86 A1JAE C34 H37 SING N N 87 A1JAE C34 H38 SING N N 88 A1JAE O7 H39 SING N N 89 A1JAE C35 H40 SING N N 90 A1JAE C35 H41 SING N N 91 A1JAE O8 H42 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JAE InChI InChI 1.06 "InChI=1S/C35H40Cl2N4O8/c1-49-30-12-23(9-10-24(30)15-40-35(19-45,20-46)21-47)25-4-2-5-26(31(25)36)27-6-3-7-28(32(27)37)41-33(48)29-11-8-22(13-38-29)14-39-34(16-42,17-43)18-44/h2-13,39-40,42-47H,14-21H2,1H3,(H,41,48)" A1JAE InChIKey InChI 1.06 MMYCKRBDDQKLBL-UHFFFAOYSA-N A1JAE SMILES_CANONICAL CACTVS 3.385 "COc1cc(ccc1CNC(CO)(CO)CO)c2cccc(c2Cl)c3cccc(NC(=O)c4ccc(CNC(CO)(CO)CO)cn4)c3Cl" A1JAE SMILES CACTVS 3.385 "COc1cc(ccc1CNC(CO)(CO)CO)c2cccc(c2Cl)c3cccc(NC(=O)c4ccc(CNC(CO)(CO)CO)cn4)c3Cl" A1JAE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(ccc1CNC(CO)(CO)CO)c2cccc(c2Cl)c3cccc(c3Cl)NC(=O)c4ccc(cn4)CNC(CO)(CO)CO" A1JAE SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(ccc1CNC(CO)(CO)CO)c2cccc(c2Cl)c3cccc(c3Cl)NC(=O)c4ccc(cn4)CNC(CO)(CO)CO" # _pdbx_chem_comp_identifier.comp_id A1JAE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[2-chloranyl-3-[2-chloranyl-3-[4-[[[2-(hydroxymethyl)-1,3-bis(oxidanyl)propan-2-yl]amino]methyl]-3-methoxy-phenyl]phenyl]phenyl]-5-[[[2-(hydroxymethyl)-1,3-bis(oxidanyl)propan-2-yl]amino]methyl]pyridine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JAE "Create component" 2025-04-07 PDBE A1JAE "Initial release" 2026-02-18 RCSB #