data_A1JAK # _chem_comp.id A1JAK _chem_comp.name "2-[3-[[2-oxidanylidene-3-(piperidin-4-ylmethylsulfanyl)propyl]sulfanylmethyl]phenyl]ethanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C18 H25 N O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-08 _chem_comp.pdbx_modified_date 2026-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1JAK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9QBT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1JAK CA C1 C 0 1 N N N N Y N 9.197 57.251 28.377 7.068 0.930 -0.730 CA A1JAK 1 A1JAK C C2 C 0 1 N N N N Y Y 9.709 57.684 27.023 6.709 2.252 -0.104 C A1JAK 2 A1JAK O O1 O 0 1 N N N N Y Y 10.855 57.483 26.686 5.852 2.305 0.746 O A1JAK 3 A1JAK CB C3 C 0 1 Y N N N Y N 10.217 56.469 29.165 6.220 -0.160 -0.126 CB A1JAK 4 A1JAK C12 C4 C 0 1 Y N N N N N 11.323 57.096 29.714 6.656 -0.832 1.000 C12 A1JAK 5 A1JAK C13 C5 C 0 1 Y N N N N N 12.263 56.371 30.420 5.878 -1.831 1.554 C13 A1JAK 6 A1JAK C14 C6 C 0 1 Y N N N N N 12.107 55.007 30.585 4.663 -2.158 0.982 C14 A1JAK 7 A1JAK C15 C7 C 0 1 Y N N N Y N 11.008 54.353 30.048 4.226 -1.486 -0.145 C15 A1JAK 8 A1JAK C16 C8 C 0 1 N N N N Y N 10.796 52.883 30.282 2.902 -1.843 -0.769 C16 A1JAK 9 A1JAK C18 C9 C 0 1 Y N N N Y N 10.071 55.097 29.338 5.003 -0.483 -0.696 C18 A1JAK 10 A1JAK C2 C10 C 0 1 N N N N Y N 15.193 49.998 23.920 -8.841 0.956 -0.460 C2 A1JAK 11 A1JAK C20 C11 C 0 1 N N N N Y N 13.421 51.888 30.091 0.101 -1.396 -0.893 C20 A1JAK 12 A1JAK C21 C12 C 0 1 N N N N Y N 13.938 50.681 30.853 -1.096 -0.636 -0.380 C21 A1JAK 13 A1JAK C22 C13 C 0 1 N N N N Y N 15.246 50.096 30.403 -2.465 -0.920 -0.941 C22 A1JAK 14 A1JAK C3 C14 C 0 1 N N N N Y N 15.681 49.637 25.308 -7.685 0.175 -1.090 C3 A1JAK 15 A1JAK C4 C15 C 0 1 N N N N Y N 14.690 50.181 26.315 -6.391 0.490 -0.335 C4 A1JAK 16 A1JAK C5 C16 C 0 1 N N N N Y N 15.313 50.328 27.705 -5.243 -0.334 -0.922 C5 A1JAK 17 A1JAK C7 C17 C 0 1 N N N N N N 13.416 49.357 26.226 -6.573 0.134 1.143 C7 A1JAK 18 A1JAK C8 C18 C 0 1 N N N N N N 13.096 49.000 24.774 -7.760 0.916 1.709 C8 A1JAK 19 A1JAK N N N 0 1 N N N Y Y N 13.842 49.618 23.634 -8.974 0.580 0.954 N A1JAK 20 A1JAK O23 O2 O 0 1 N N N N N N 13.337 50.200 31.785 -0.957 0.200 0.480 O23 A1JAK 21 A1JAK S17 S1 S 0 1 N N N N Y N 11.818 51.826 29.223 1.592 -0.831 -0.028 S17 A1JAK 22 A1JAK S6 S2 S 0 1 N N N N Y N 14.936 49.062 28.943 -3.685 0.147 -0.127 S6 A1JAK 23 A1JAK HA1 H1 H 0 1 N N N N Y N 8.921 58.148 28.952 6.889 0.976 -1.805 HA1 A1JAK 24 A1JAK H12 H4 H 0 1 N N N N N N 11.452 58.161 29.589 7.606 -0.576 1.447 H12 A1JAK 25 A1JAK H13 H5 H 0 1 N N N N N N 13.122 56.870 30.844 6.220 -2.356 2.434 H13 A1JAK 26 A1JAK H14 H6 H 0 1 N N N N N N 12.847 54.446 31.137 4.055 -2.939 1.414 H14 A1JAK 27 A1JAK H16B H7 H 0 0 N N N N Y N 9.738 52.649 30.090 2.944 -1.655 -1.842 H16B A1JAK 28 A1JAK H16A H8 H 0 0 N N N N Y N 11.036 52.660 31.332 2.690 -2.898 -0.593 H16A A1JAK 29 A1JAK H18 H9 H 0 1 N N N N Y N 9.213 54.599 28.912 4.659 0.045 -1.573 H18 A1JAK 30 A1JAK H2B H10 H 0 1 N N N N Y N 15.849 49.503 23.189 -8.640 2.025 -0.534 H2B A1JAK 31 A1JAK H2A H11 H 0 1 N N N N Y N 15.272 51.089 23.804 -9.766 0.723 -0.986 H2A A1JAK 32 A1JAK H20A H12 H 0 0 N N N N Y N 14.180 52.129 29.332 -0.041 -2.461 -0.714 H20A A1JAK 33 A1JAK H20B H13 H 0 0 N N N N Y N 13.354 52.712 30.817 0.213 -1.219 -1.962 H20B A1JAK 34 A1JAK H22A H14 H 0 0 N N N N Y N 15.676 49.483 31.209 -2.467 -0.723 -2.013 H22A A1JAK 35 A1JAK H22B H15 H 0 0 N N N N Y N 15.946 50.904 30.144 -2.721 -1.965 -0.764 H22B A1JAK 36 A1JAK H3A H16 H 0 1 N N N N Y N 15.749 48.543 25.406 -7.892 -0.893 -1.029 H3A A1JAK 37 A1JAK H3B H17 H 0 1 N N N N Y N 16.671 50.083 25.482 -7.577 0.466 -2.135 H3B A1JAK 38 A1JAK H4 H18 H 0 1 N N N N Y N 14.430 51.197 25.982 -6.163 1.552 -0.430 H4 A1JAK 39 A1JAK H5B H19 H 0 1 N N N N Y N 16.405 50.343 27.574 -5.429 -1.393 -0.745 H5B A1JAK 40 A1JAK H5A H20 H 0 1 N N N N Y N 14.979 51.294 28.113 -5.176 -0.151 -1.994 H5A A1JAK 41 A1JAK H7A H21 H 0 1 N N N N N N 12.582 49.938 26.646 -6.762 -0.935 1.240 H7A A1JAK 42 A1JAK H7B H22 H 0 1 N N N N N N 13.546 48.430 26.804 -5.669 0.395 1.694 H7B A1JAK 43 A1JAK H8B H23 H 0 1 N N N N N N 12.035 49.247 24.621 -7.901 0.655 2.758 H8B A1JAK 44 A1JAK H8A H24 H 0 1 N N N N N N 13.237 47.913 24.684 -7.564 1.985 1.625 H8A A1JAK 45 A1JAK H2 H25 H 0 1 N N N Y Y N 13.345 50.437 23.347 -9.788 1.010 1.367 H2 A1JAK 46 A1JAK OXT O3 O 0 1 N Y N N Y Y 8.763 58.375 26.120 7.341 3.372 -0.489 OXT A1JAK 47 A1JAK HXT H26 H 0 1 N Y N N Y Y 9.205 58.600 25.310 7.076 4.196 -0.059 HXT A1JAK 48 A1JAK HA2 H2 H 0 1 N N N N Y N 8.307 56.621 28.231 8.121 0.715 -0.546 HA2 A1JAK 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JAK N C2 SING N N 1 A1JAK N C8 SING N N 2 A1JAK C2 C3 SING N N 3 A1JAK C8 C7 SING N N 4 A1JAK C3 C4 SING N N 5 A1JAK C7 C4 SING N N 6 A1JAK C4 C5 SING N N 7 A1JAK O C DOUB N N 8 A1JAK C CA SING N N 9 A1JAK C5 S6 SING N N 10 A1JAK CA CB SING N N 11 A1JAK S6 C22 SING N N 12 A1JAK CB C18 DOUB Y N 13 A1JAK CB C12 SING Y N 14 A1JAK S17 C20 SING N N 15 A1JAK S17 C16 SING N N 16 A1JAK C18 C15 SING Y N 17 A1JAK C12 C13 DOUB Y N 18 A1JAK C15 C16 SING N N 19 A1JAK C15 C14 DOUB Y N 20 A1JAK C20 C21 SING N N 21 A1JAK C22 C21 SING N N 22 A1JAK C13 C14 SING Y N 23 A1JAK C21 O23 DOUB N N 24 A1JAK CA HA1 SING N N 25 A1JAK C12 H12 SING N N 26 A1JAK C13 H13 SING N N 27 A1JAK C14 H14 SING N N 28 A1JAK C16 H16B SING N N 29 A1JAK C16 H16A SING N N 30 A1JAK C18 H18 SING N N 31 A1JAK C2 H2B SING N N 32 A1JAK C2 H2A SING N N 33 A1JAK C20 H20A SING N N 34 A1JAK C20 H20B SING N N 35 A1JAK C22 H22A SING N N 36 A1JAK C22 H22B SING N N 37 A1JAK C3 H3A SING N N 38 A1JAK C3 H3B SING N N 39 A1JAK C4 H4 SING N N 40 A1JAK C5 H5B SING N N 41 A1JAK C5 H5A SING N N 42 A1JAK C7 H7A SING N N 43 A1JAK C7 H7B SING N N 44 A1JAK C8 H8B SING N N 45 A1JAK C8 H8A SING N N 46 A1JAK N H2 SING N N 47 A1JAK C OXT SING N N 48 A1JAK OXT HXT SING N N 49 A1JAK CA HA2 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1JAK InChI InChI 1.06 "InChI=1S/C18H25NO3S2/c20-17(12-23-10-14-4-6-19-7-5-14)13-24-11-16-3-1-2-15(8-16)9-18(21)22/h1-3,8,14,19H,4-7,9-13H2,(H,21,22)" A1JAK InChIKey InChI 1.06 BTHILQROJMSWJP-UHFFFAOYSA-N A1JAK SMILES_CANONICAL CACTVS 3.385 "OC(=O)Cc1cccc(CSCC(=O)CSCC2CCNCC2)c1" A1JAK SMILES CACTVS 3.385 "OC(=O)Cc1cccc(CSCC(=O)CSCC2CCNCC2)c1" A1JAK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSCC(=O)CSCC2CCNCC2)CC(=O)O" A1JAK SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CSCC(=O)CSCC2CCNCC2)CC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1JAK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[3-[[2-oxidanylidene-3-(piperidin-4-ylmethylsulfanyl)propyl]sulfanylmethyl]phenyl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1JAK "Create component" 2025-04-08 PDBE A1JAK "Modify atom id" 2026-03-12 PDBE A1JAK "Initial release" 2026-03-18 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1JAK _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #